BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G54230.1

Length=1094
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923991 jgi|Araly1|923991|scaffold_105272.1                        313    2e-84


> Ahg923991 jgi|Araly1|923991|scaffold_105272.1
Length=595

 Score =  313 bits (169),  Expect = 2e-84
 Identities = 240/272 (88%), Gaps = 14/272 (5%)
 Strand=Plus/Plus

Query  214  GTACACGTTAAGTTTAGATGATATGGTTTTTGAAGCTTTATCAACAATAGATGATGAACA  273
            ||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct  74   GTATACGTTAAGTTTAGATGATATGGTTTTGGAAGCTTTATCAACAATCGATGATGAACA  133

Query  274  TGATGGAACTGGTCGTGATGTCGATGGGATTTTCAAATTTAACAATGACCGGTACGTGAT  333
            ||||||| |||||||||||||||||||||||||| ||| ||||||||| |||||||| ||
Sbjct  134  TGATGGATCTGGTCGTGATGTCGATGGGATTTTCGAATATAACAATGAACGGTACGTAAT  193

Query  334  ACCGGATAAT-TCTAGGGAGCGATTGAGAGGCGAGGTTGAAAAACTAGTTGCTGAAAGAA  392
            |||||| ||| | |||||||| ||||| || |||| ||||||||||| |||||||||| |
Sbjct  194  ACCGGAAAATGT-TAGGGAGCTATTGAAAGACGAGCTTGAAAAACTAATTGCTGAAAGGA  252

Query  393  AAATAGAGAAGGTAGGAAACCGCTACATGATGATGATGCCCCAACGTGTTCCT------G  446
            ||||||||||||||||||||||||||| ||| |  ||||||||||||||||||      |
Sbjct  253  AAATAGAGAAGGTAGGAAACCGCTACACGAT-A--ATGCCCCAACGTGTTCCTACCACAG  309

Query  447  C---TACTAGAGAAGATTCCACAACGCCACAA  475
            |   |||| ||||||||||||||| |||||||
Sbjct  310  CAGCTACTGGAGAAGATTCCACAATGCCACAA  341


 Score =  222 bits (120),  Expect = 4e-57
 Identities = 171/194 (88%), Gaps = 9/194 (5%)
 Strand=Plus/Plus

Query  660  GTACTTCTCTCGTACCAAGAGCACCAGAAGAAAATCCTCAGATGGACGCAGTAGCAAAAT  719
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct  352  GTACTTCTCTCGTACCAAGAGCACCAGAAGAAAATCCTCAGATAGACGCAGTAGCAAAAG  411

Query  720  TAATCGCCGAGGCAGAACACTTGGAGTTCCAAGCAAAAGAGGCACAAGAACTTG-CAGAT  778
            || |||| ||||||||| | || ||||||||||| ||||||||||||||||||| | |||
Sbjct  412  TAGTCGCAGAGGCAGAAAATTTTGAGTTCCAAGCGAAAGAGGCACAAGAACTTGTC-GAT  470

Query  779  AAACAC-GCCCAGTTGCTAGAATTAGAAAGCGAGATAAT-CTTGCAGTTAGCCGTAGAAA  836
            | |||| ||| || ||||||| |||||  |  |||| || |||| |||||||||||||||
Sbjct  471  AGACACAGCC-AGATGCTAGATTTAGA--G--AGATTATTCTTGGAGTTAGCCGTAGAAA  525

Query  837  TCTTTAACCGATGT  850
            || |||||||||||
Sbjct  526  TCCTTAACCGATGT  539


 Score =  154 bits (83),  Expect = 1e-36
 Identities = 134/158 (85%), Gaps = 6/158 (4%)
 Strand=Plus/Plus

Query  480  ATCCTCAGGCAGAAGCAGTAGCAAAACTAGTCGCAGAGACAGAACACTTAGAGTTCCAAG  539
            ||||||||  ||| |||||||||||| ||||||||||| ||||| | || ||||||||||
Sbjct  385  ATCCTCAGATAGACGCAGTAGCAAAAGTAGTCGCAGAGGCAGAAAATTTTGAGTTCCAAG  444

Query  540  CAAAAGAGGCTCAAGAACTTG-CAGATAGATACAGTTTGATGCTAAATTCCGA-ATGCA-  596
            | |||||||| |||||||||| | |||||| ||||   ||||||| |||  || | | | 
Sbjct  445  CGAAAGAGGCACAAGAACTTGTC-GATAGACACAGCCAGATGCTAGATTTAGAGA-G-AT  501

Query  597  TAATCTTGGAGTTAGCCGTAGAAATCCTTAACCGATGT  634
            || |||||||||||||||||||||||||||||||||||
Sbjct  502  TATTCTTGGAGTTAGCCGTAGAAATCCTTAACCGATGT  539



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40753398273


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5