BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54240.1
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914618 jgi|Araly1|914618|Al_scaffold_0001_4872 691 0.0
> Ahg914618 jgi|Araly1|914618|Al_scaffold_0001_4872
Length=699
Score = 691 bits (374), Expect = 0.0
Identities = 537/613 (88%), Gaps = 21/613 (3%)
Strand=Plus/Plus
Query 199 AACCTTCTTCCTATGCTGAACAGCTTGAAA-GGCTCATGATGATAGATTCAGAAGAAGAC 257
||||||| ||||||| || |||||||||| ||| | ||||||||| ||||||| |||
Sbjct 100 AACCTTC--CCTATGCCGACCAGCTTGAAAGGGC-C---ATGATAGATACAGAAGACGAC 153
Query 258 CGGGGTCCCTCTGGGTTTACGACTGATGAATTGATCTT-TCAGGCTTTAGAAACAGTCTA 316
|||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 154 AGGGGTCCCTCAGGGTTTACGACTGATGAATTGAT-TTATCAGGCTTTAGAAACAGTCTA 212
Query 317 CG-AGAAT-CATAATGGTCTTGATGTCGATGCG-ATTTTCACTTTTATCAAGGAAAGGAA 373
| | || | |||||||||||| |||||| | ||||||| ||||||| |||||| | |
Sbjct 213 TGCTG-ATGGA-AATGGTCTTGATATCGATG-GAATTTTCAATTTTATCGAGGAAAAGTA 269
Query 374 CGAGTTACAGGAAGATTTTAGGGAGCGGTTGGAAAACCAGCTGAGATATCTAGTTTCTGA 433
|||||||||||||||||||||||| ||||||||| ||||||| || |||||||||||||
Sbjct 270 CGAGTTACAGGAAGATTTTAGGGACCGGTTGGAAGTCCAGCTGGGAAATCTAGTTTCTGA 329
Query 434 AGGCCAAGTATACAA-GGTAGGAAACCTCTACAAGATCCCCCGTGGTGTATTTGATACTC 492
|||||||||| | || |||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 330 AGGCCAAGTAGA-AATGGTAGGAAACCTCTACAAGATCCCCCATGGTCTTTTTGATACTC 388
Query 493 CAGTTGTGTCAGTAGGAGATTCAAATCAAAGAGAAACCATGGA-TCCAGAAGATTCCACG 551
| | |||||||||| || |||||||| | | ||||||| || ||||| || ||| |||
Sbjct 389 AAATAGTGTCAGTAGTAGCTTCAAATCTACCACAAACCAT-GAGTCCAGGAGGTTCGACG 447
Query 552 GGCACAAAGGCACAAGACACACCAAGTACTTGTGCTTCTTTCGCACCACCAACAACAGAA 611
||| | ||| |||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 448 GGCGCGAAGACACAAGACACACCAAGTACTTGTGCTTCTTTCGCACCAGCAGCAACAAAA 507
Query 612 GTAGATCCTCGGATA-ATCGCATTAGCAAAAGAAGTCGCAGAGGCAGAACACTTGGAGTT 670
| ||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||
Sbjct 508 GAAGATCCTCGGATAGAA-GCAGTAGCAAAAGAAGTCGCAGAGGCAGAACACTTGGAGTT 566
Query 671 GGAAGCAAAAGAGGCATACGAACTTGCAGATAAACACGCCCAGTTGCTAAAATTAGAAAG 730
||||| ||||||||| | ||||||||||||| ||||| |||||||||||| ||||||||
Sbjct 567 CGAAGCGAAAGAGGCACAAGAACTTGCAGATAGACACGTCCAGTTGCTAAATTTAGAAAG 626
Query 731 CAACATAACCTTGCAGTTAGCCGTAGAAATCCTTAATCGATGTGCTAACGGTGAAAAGAT 790
||||| || ||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 627 CAACAAAATCTTGCAGTTAGCCGTGGAAATCCTTAACCGATGTGCTAACGGTGAAAAGAT 686
Query 791 TTTCCTGCTGTAA 803
|||||||||||||
Sbjct 687 TTTCCTGCTGTAA 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37817933664
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5