BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54250.1
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923994 jgi|Araly1|923994|scaffold_105275.1 756 0.0
Ahg938978 jgi|Araly1|938978|scaffold_503169.1 651 0.0
Ahg923157 jgi|Araly1|923157|scaffold_104438.1 161 6e-39
> Ahg923994 jgi|Araly1|923994|scaffold_105275.1
Length=490
Score = 756 bits (409), Expect = 0.0
Identities = 437/451 (97%), Gaps = 0/451 (0%)
Strand=Plus/Plus
Query 107 GATGGCGAGCAATATCATCTTGTTCGAGGATATCTTCGTGGTCGATCAGTTAGACCCTGA 166
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 28 GATGGCGAGCAATATCATCTTGTTCGAGGATATCTTCGTGGTCGATAAGCTAGACCCTGA 87
Query 167 TGGCAAAAAGTTCGATAAAGTTACTCGCGTTCAAGCTACGAGCCACAACTTGGAAATGTT 226
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 88 TGGCAAAAAGTTTGATAAAGTTACTCGCGTTCAAGCTACGAGCCACAACTTGGAAATGTT 147
Query 227 TATGCATTTAGATGTTAATACAGAGGTTTATCCATTGGCTGTTGGTGATAAGTTCACACT 286
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 148 TATGCATTTAGATGTTAACACAGAGGTTTATCCATTGGCTGTTGGTGATAAGTTCACACT 207
Query 287 TGCGTTGGCTCCTACGCTGAATCTCGATGGAACCCCTGATACCGGTTATTTTACTCCGGG 346
|||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 208 TGCGTTAGCTCCCACGCTTAATCTCGATGGAACCCCTGATACCGGATATTTTACTCCGGG 267
Query 347 AGCAAAGAAAACACTTGCCGATAAGTATGAATACATAATGCACGGGAAGCTTTACAAGAT 406
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 268 AGCAAAGAAAACACTTGCGGATAAGTATGAATACATCATGCACGGGAAGCTTTACAAGAT 327
Query 407 CTCTGAGCGTGACGGCAAAACTCCAAAAGCAGAGCTATATGTTTCGTTTGGCGGCCTCCT 466
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 CTCTGAGCGTGATGGCAAAACTCCAAAAGCAGAGCTATATGTTTCGTTTGGCGGCCTCCT 387
Query 467 GATGTTGCTTAAGGGAGATCCAGCTCACATTTCTCACTTCGAACTCGACCAGAGGCTCTT 526
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 388 GATGTTGCTTAAGGGAGATCCTGCTCACATTTCTCACTTCGAACTCGACCAGAGGCTCTT 447
Query 527 CCTACTCATGAGGAAGCTGTGAGGTGCCATT 557
||||||||||||||||||||||| | |||||
Sbjct 448 CCTACTCATGAGGAAGCTGTGAGATACCATT 478
> Ahg938978 jgi|Araly1|938978|scaffold_503169.1
Length=481
Score = 651 bits (352), Expect = 0.0
Identities = 419/452 (93%), Gaps = 2/452 (0%)
Strand=Plus/Plus
Query 107 GATGGCGAGCAATATCATCTTGTTCGAGGATATCTTCGTGGTCGATCAGTTAGACCCTGA 166
||||||||||||||| ||| ||||||||||||| |||||||||||| || ||||||||||
Sbjct 20 GATGGCGAGCAATATTATCATGTTCGAGGATATATTCGTGGTCGATAAGCTAGACCCTGA 79
Query 167 TGGCAAAAAGTTCGATAAAGTTACTCGCGTTCAAGCTACGAGCCACAACTTGGAAATGTT 226
|||||||||||||||||||||||| || ||| |||| | |||||||||||||||||||||
Sbjct 80 TGGCAAAAAGTTCGATAAAGTTACGCGTGTTGAAGCAAGGAGCCACAACTTGGAAATGTT 139
Query 227 TATGCATTTAGATGTTAATACAGAGGTTTATCCATTGGCTGTTGGTGATAAGTTCACACT 286
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||
Sbjct 140 TATGCATTTAGATGTTAACACTGAGGTTTATCCATTGGCTGTTGGTGATAAATTCACGCT 199
Query 287 TGCGT-TGGCTCCTACGCTGAATCTCGATGGAACCCCTGATACCGGTTATTTTACTCCGG 345
|| | ||||||| ||||| |||||||||||||| ||||||||||| || ||||||||||
Sbjct 200 GGC-TATGGCTCCCACGCTTAATCTCGATGGAACTCCTGATACCGGATACTTTACTCCGG 258
Query 346 GAGCAAAGAAAACACTTGCCGATAAGTATGAATACATAATGCACGGGAAGCTTTACAAGA 405
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 259 GAGCAAAGAAAACACTTGCAGATAAGTATGAATACATCATGCACGGGAAGCTTTACAAGA 318
Query 406 TCTCTGAGCGTGACGGCAAAACTCCAAAAGCAGAGCTATATGTTTCGTTTGGCGGCCTCC 465
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 319 TCTCTGAGCGTGACGGCAAAACTCCAAAAGCAGAGTTATATGTTTCGTTCGGCGGCCTCC 378
Query 466 TGATGTTGCTTAAGGGAGATCCAGCTCACATTTCTCACTTCGAACTCGACCAGAGGCTCT 525
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 379 TGATGTTGCTTCAGGGAGATCCAGCTCACATTTCTCACTTCGAACTTGACCAGAGGCTCT 438
Query 526 TCCTACTCATGAGGAAGCTGTGAGGTGCCATT 557
| |||| ||||||||||| |||| |||||||
Sbjct 439 TTTTACTAATGAGGAAGCTTTGAGATGCCATT 470
> Ahg923157 jgi|Araly1|923157|scaffold_104438.1
Length=284
Score = 161 bits (87), Expect = 6e-39
Identities = 97/102 (95%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 185 AGTTACTCGCGTTCAAGCTACGAGCCACAACTTGGAAATGTTTATGCATTTAGATGTTAA 244
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 60 AGTTACTCGCTTTCAAGCTACGAGCCACAACTTGGAAATGTTTATGCATTTAGAGGTTAA 119
Query 245 TACAGAGGTTTATCCATTGGCTGTTGGTGATAAGTTCACACT 286
||||||||||||| ||| |||||||||||||||||||||||
Sbjct 120 CACAGAGGTTTATCAATTTGCTGTTGGTGATAAGTTCACACT 161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28401573165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5