BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54260.1
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474555 jgi|Araly1|474555|fgenesh2_kg.1__4509__AT1G54260.1 466 2e-130
Ahg923999 jgi|Araly1|923999|scaffold_105280.1 414 6e-115
> Ahg474555 jgi|Araly1|474555|fgenesh2_kg.1__4509__AT1G54260.1
Length=639
Score = 466 bits (252), Expect = 2e-130
Identities = 296/317 (93%), Gaps = 3/317 (1%)
Strand=Plus/Plus
Query 557 ACTGGTACGAGGAGCAACAAGACTTTAGGATGTTTTTGAGTGAGTGCCTGATAATTCTCG 616
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 323 ACTGGTACGAGGAGCGACAAGACTTTAGGATGTTTTTGAGTGAGTGCCTGGCAATTCTCG 382
Query 617 TTTCTCAAGGCAAACTGGAAAAGG---TATTGGATCGCTACAAGATATCAGAATTAGAAA 673
| |||||||||||||||||||||| |||| ||| |||||||||| |||||||||||||
Sbjct 383 TCTCTCAAGGCAAACTGGAAAAGGTATTATTAGATGGCTACAAGATCTCAGAATTAGAAA 442
Query 674 ACAAAGTGTTGGAAGTAGCACCAGAAGTTGTAGCAATGAAACTAGCAGAGTCAGATAACA 733
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 443 ACAAAGTGATGGAAGTAGCACCAGAAGCTGTAGCAATGAAACTAGCAGAGTCAGATAACA 502
Query 734 AAAGGTTGATAGCAGCAGAGGCAGTCGAAGAAGAAGAACGAATGCACAAGTTAGTAGAAG 793
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||
Sbjct 503 AAAGGTTGATAGCAGCAGAGGCAGTCGAAGAAGAAGAACGGATGCAAAAGTTGGTTGAAG 562
Query 794 AAAGCCACACGATGCTTCAATTATGCTTAGAGATCCACCAACAATGTGCTCTTGGCCAAG 853
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||
Sbjct 563 AAAGCCACACGATGCTTCAGTTATGCTTAGAAATCCACCAACAATGTGCTCTTGGCGAAG 622
Query 854 AGGTTGTTCTACTGTAA 870
| |||||||||| ||||
Sbjct 623 AAGTTGTTCTACGGTAA 639
Score = 219 bits (118), Expect = 5e-56
Identities = 141/152 (93%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 407 AGAAACTGTTGAGTTATAGCCTGGGAATCCTTGTTTCTCAAGACAAACTCAAAAAGGTAC 466
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 101 AGAAACTGTTGAGTTATAGCCTGAGAATCCTTGTTTCTCAAGACAAACTCAAAAAGGTAC 160
Query 467 GAAATCGTTACAAAATCTCAG-TTACGAAAGCAATTAAGCCAACACTCACCCTGCGTCCA 525
|||||||||||||||| | || |||||||||||| |||||||||||||| ||||| |||
Sbjct 161 GAAATCGTTACAAAAT-TGAGATTACGAAAGCAACGAAGCCAACACTCACACTGCGCCCA 219
Query 526 AAAGATTCCACGAAGCCACCAGAGTTACCAAA 557
||||||||||||||||||| |||| | |||||
Sbjct 220 AAAGATTCCACGAAGCCACTAGAGCTGCCAAA 251
> Ahg923999 jgi|Araly1|923999|scaffold_105280.1
Length=355
Score = 414 bits (224), Expect = 6e-115
Identities = 254/269 (94%), Gaps = 0/269 (0%)
Strand=Plus/Plus
Query 288 TGCTAGGTATGATGCGATGGTTTTTGAGGCTGTATCAACAATTAATGATGAAAATGGTTC 347
||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 5 TGCAAGGTATGATGCAATGGTTTTTGAGGCTATATCAACAATTAATGATGAAAATGGTTC 64
Query 348 CAATCTCAAAGAGATTCTCAGATTTATCGAGGGACAACATGAGGTTCCACAAAACTTTAA 407
|||||||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||
Sbjct 65 TAATCTCAAGGAGATTCTCAGCTTTGTCGAGGAACAACATGAGGTTCCACAAAACTTTAA 124
Query 408 GAAACTGTTGAGTTATAGCCTGGGAATCCTTGTTTCTCAAGACAAACTCAAAAAGGTACG 467
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 125 GAGACTGTTGAGTTATAGCCTGAGAATCCTTGTTTCTCAAGACAAACTCAAAAAGGTACG 184
Query 468 AAATCGTTACAAAATCTCAGTTACGAAAGCAATTAAGCCAACACTCACCCTGCGTCCAAA 527
||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||
Sbjct 185 AAATCGTTACAAAATCTCAGTTACGAAAGCAATGAAGCCAACACTCACCTTGTGTCCAAA 244
Query 528 AGATTCCACGAAGCCACCAGAGTTACCAA 556
|||||||| ||||||||||||| ||||||
Sbjct 245 AGATTCCAAGAAGCCACCAGAGCTACCAA 273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41401487862
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5