BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54290.1
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474560 jgi|Araly1|474560|fgenesh2_kg.1__4514__AT1G54290.1 998 0.0
> Ahg474560 jgi|Araly1|474560|fgenesh2_kg.1__4514__AT1G54290.1
Length=749
Score = 998 bits (540), Expect = 0.0
Identities = 713/788 (90%), Gaps = 45/788 (6%)
Strand=Plus/Plus
Query 28 aaaaGAAGAATATTGGTTCGAATTAAAACTTGTTCGATTTTGTAGCTCTTCCTCTCGTAA 87
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAATAAGAATATTGGTCCGAATTAAAACTTGTTCGATTTTGTAGCTCTTCCTCTCGTAA 60
Query 88 TTTCCTCTTCTTCTTCTTTCAGACAGAAGCTTGCCTTTGTCCGAATTTAG-GGTTTCCAT 146
|||| ||||||||||||||||||||||||| ||||||||||||||||| | |||||||||
Sbjct 61 TTTCTTCTTCTTCTTCTTTCAGACAGAAGCCTGCCTTTGTCCGAATTT-GAGGTTTCCAT 119
Query 147 TTTT-CTTTCCGTTCTTCCTTCAATCAAATACTCGAAACCCTAATCTCTTCTTGATC--A 203
|||| ||| || ||||||||||||||||||| |||||||||||| || |||||||| |
Sbjct 120 TTTTCCTTACC-TTCTTCCTTCAATCAAATAATCGAAACCCTAA--TC-TCTTGATCAGA 175
Query 204 GGCCTT-GTCGATTTACTGTCCCTTGTATCAACTTAAGGTTCATGTCTGATCTTGAAGTT 262
|||||| |||||||| || |||||||||| ||||||||||||||||||||||||||||||
Sbjct 176 GGCCTTGGTCGATTTGCTTTCCCTTGTATTAACTTAAGGTTCATGTCTGATCTTGAAGTT 235
Query 263 CAAGTCCCCACTGCCTTTGATCCGTTCGCTGATGCAAATGCTGAGGACTCTGGGGCGGGA 322
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 236 CAAGTCCCCACTGCCTTTGATCCGTTTGCTGATGCAAATGCTGAGGACTCTGGGGCGGGA 295
Query 323 ACAAAGGAATACGTGCACATTCGTGTTCAGCAGCGTAATGGTAGAAAAAGCTTGACAACT 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 ACAAAGGAATACGTGCACATTCGTGTTCAGCAGCGTAATGGTAGAAAAAGCTTGACAACT 355
Query 383 GTCCAGGGGCTTAAGAAAGAGTATAGCTATAGCAAGATACTTAAAGACCTTAAGAAAGAA 442
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GTTCAGGGACTTAAGAAAGAGTATAGCTATAGCAAGATACTTAAAGACCTTAAGAAAGAA 415
Query 443 TTCTGCTGCAATGGCACCGTCGTCCAGGACTCTGAATTAGGACAGGTTATTCAGCTTCAA 502
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 416 TTCTGCTGCAATGGCACTGTTGTCCAGGACTCTGAATTAGGACAGGTTATTCAGCTTCAA 475
Query 503 GGTGATCAGAGGAAGAACGTATCTACGTTCCTTGTTCAGGCTGGGCTTGTGAAGAAGGAT 562
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 476 GGCGATCAGAGGAAGAACGTCTCTACGTTCCTTGTTCAGGCTGGGCTTGTGAAGAAGGAT 535
Query 563 AACATAAAAATCCATGGTTTTTGAGCAATTCTAGAGATACTCCTTGTTCAGCTTGTATTT 622
||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 536 AACATCAAAATCCATGGTTTTTGAGCAATTCTAGAGATACTCGTTGTTCAACTTGTATTT 595
Query 623 ACGGGATCAGCCAGTCCCAAAAGGAATTTATAAACCATTACTTAAATGTATTAATGCTTT 682
|| | |||||||||||||||| | || | | | ||| | ||||| |
Sbjct 596 ACCGAATCAGCCAGTCCCAAAT--A-TT-A-A-----TG-CTT---T-TATTA-T----- 634
Query 683 TATTATGTATTGTGTCa-aaaaaaTAATCTAATAGTTTGCTTATGAGCGTATATATAAAT 741
|| || | |||||| |||||| ||||||| || ||||||||||| | ||||||||||
Sbjct 635 -AT-AT-T---GTGTCAGAAAAAA-AATCTAAAAGGTTGCTTATGAGTGAATATATAAAT 687
Query 742 GTATCAACTTTTGGTATGCATTTGTACTTGTAGTGTGAGTTTATCAATAAAATTTGCTTT 801
| ||||||||||||| |||||||||| || ||| || || ||||||||||||||||||
Sbjct 688 GCATCAACTTTTGGTTTGCATTTGTA---GT-GTGAGA-TT-ATCAATAAAATTTGCTTT 741
Query 802 GTGAATTG 809
||||||||
Sbjct 742 GTGAATTG 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29964612762
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5