BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54300.1
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903429 jgi|Araly1|903429|Al_scaffold_0003_557 859 0.0
Ahg908241 jgi|Araly1|908241|Al_scaffold_0002_1322 852 0.0
Ahg352242 jgi|Araly1|352242|fgenesh1_pg.C_scaffold_6002835 763 0.0
Ahg943052 jgi|Araly1|943052|scaffold_603596.1 435 4e-121
> Ahg903429 jgi|Araly1|903429|Al_scaffold_0003_557
Length=1206
Score = 859 bits (465), Expect = 0.0
Identities = 723/838 (86%), Gaps = 55/838 (7%)
Strand=Plus/Plus
Query 1 ATGAATTTCCCAATCTCCACGATCAG-GATTGGCGGATGGGTCGTC-GTTGCCAA-AAAC 57
||||||||||||||||||| |||| | ||||| || || | | |||| ||| ||||
Sbjct 163 ATGAATTTCCCAATCTCCATGATC-GAAATTGGAACAT-GGACCCCTGTTG-CAATAAAC 219
Query 58 CCTGATGACATTGTGGCCAAATTCTATTTTGCAAAGAAGAAACTTATATGGGAGTTTCTC 117
|||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 220 CCTGATGATATTGTGGCGAAATTCTATTTTGCTAAGAAAAAACTTATATGGGAGTTTCTC 279
Query 118 TTCGGAGAACCAGAGACTAACACGCTGAGGCTGAA-ACGTAAGATCGAGATTCAATGGAA 176
|| ||||||||||| ||||||| || |||||||| | | ||||||||||||||||||||
Sbjct 280 TTTGGAGAACCAGACACTAACATGCCAAGGCTGAAGA-GAAAGATCGAGATTCAATGGAA 338
Query 177 TGATGTCTCATCTTTTGAAGAGAGTA-TTAGTTCACGTGATGAAACTGGAATCCTCAAAA 235
|||| ||||||||||||||||| ||| ||| | |||||||||||||||| ||||||||||
Sbjct 339 TGATATCTCATCTTTTGAAGAGCGTATTTA-TACACGTGATGAAACTGGGATCCTCAAAA 397
Query 236 TCGAGTTGAAAAAACGTCCAACATTCTTCATAGAGACTAATCCACAGGCAGGAAAACACA 295
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 TCGAGTTGAGAAAACGTCCAACATTCTTCATAGAGACTAATCCACAGGCAGGAAAACACA 457
Query 296 CTCAATGGAAACAATTGGATCACGATTTCACCGGAGA-TCATGCTTCTAATTACAGGAGA 354
||||||||||||| |||||| |||||||||| | | ||| ||||||| || |||||||
Sbjct 458 CTCAATGGAAACAGTTGGAT---GATTTCACCG-ACAATCAGGCTTCTACTTGCAGGAGA 513
Query 355 CATACACTTCATTTTCCTCCCGGAGTTCTGCAAAAGAACTTGGAGAAGCTTGTAACCGAC 414
|||||| |||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 514 CATACAATTCATTTTCCTCCCGGAGTTCTGCAAAAGAACTTGGAGAAGCTTCTGACTGAT 573
Query 415 AGCTTCTGGTCCAAACTCTATGAA-GTCCCTTTCCCGGTACATGAATCTCGTTACTTCGA 473
||||||||||||||||||||| || ||||||||||||||| | ||||||| || |||||
Sbjct 574 AGCTTCTGGTCCAAACTCTAT-AACGTCCCTTTCCCGGTAGAAGAATCTCTTTTTTTCGA 632
Query 474 TAGTGG-CTTTGAAAACAAC---TCATCTCGCAACAGCCACAGCCACACAGTTGGCTTTA 529
|| ||| ||||||||||||| ||||||||||||||||||| ||| |||||| ||||||
Sbjct 633 TA-TGGGCTTTGAAAACAACAACTCATCTCGCAACAGCCACAACCAGACAGTTAGCTTTA 691
Query 530 ACGTCAACAATGGCCCTCAACATCA-C-TT-TTCTCAAGGAATTGGTGGCGTGGGAGTGG 586
| |||||| |||||| ||| ||||| | || |||||||||||||||||||||||||||||
Sbjct 692 ATGTCAACTATGGCCTTCAGCATCATCATTATTCTCAAGGAATTGGTGGCGTGGGAGTGG 751
Query 587 GAGA---AG---GAAACTTTA-----GCA------T---GG-CTAACGGTGGATGGCAAA 625
||| || ||||||||| ||| | || ||||||||||||||||||
Sbjct 752 GAGTGGGAGACAGAAACTTTAACATAGCACCGCAGTTCAGGGCTAACGGTGGATGGCAAA 811
Query 626 GAAACTCATATAGTCCAGTCAATAGTCTGAATTATAACACTGCTAATGAGTT-CTTTGGA 684
||||||||||||||| || ||||||||||||||||||||||||||||||||| | | |||
Sbjct 812 GAAACTCATATAGTCAAGCCAATAGTCTGAATTATAACACTGCTAATGAGTTGCCTCGGA 871
Query 685 ATGCAAGCTACC--C-CACCATCGTCTCAAGTGGTTAACGAGCATTATAACACGCAAAAC 741
||||||||| | ||||||||| ||| |||||||||||||||||||||| |||||
Sbjct 872 -TGCAAGCTATTATCACACCATCGTATCAGGTGGTTAACGAGCATTATAACATGCAAATG 930
Query 742 GATTTCACCGGTTCACAGTTTGGTTA-TCACATGAACCAAGACGAGATCCAGAA-GAT 797
||||||||||||||||||| | ||| ||| ||||||||||||||||||| ||| |||
Sbjct 931 GATTTCACCGGTTCACAGTATA-TTAATCAGATGAACCAAGACGAGATCC-GAAAGAT 986
> Ahg908241 jgi|Araly1|908241|Al_scaffold_0002_1322
Length=1227
Score = 852 bits (461), Expect = 0.0
Identities = 714/828 (86%), Gaps = 50/828 (6%)
Strand=Plus/Plus
Query 1 ATGAATTTCCCAATCTCCACGATCAGGATTGGCGGATGGGTCGTCGTTGCCAA-AAACCC 59
||||||||||||||||| | ||||| ||||| |||| | ||||| ||| ||||||
Sbjct 163 ATGAATTTCCCAATCTCAATGATCAAAATTGGAACATGGACCCCCGTTG-CAATAAACCC 221
Query 60 TGATGACATTGTGGCCAAATTCTATTTTGCAAAGAAGAAACTTATATGGGAGTTTCTCTT 119
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 TGAAGATATTGTGGCGAAATTCTATTTTGCAAAGAAGAAACTTATATGGGAGTTTCTCTT 281
Query 120 CGGAGAACCAGAGACTAACACGCTGAGGCTGAA-ACGTAAGATCGAGATTCAATGGAATG 178
||||||| ||| ||||||| || |||||||| | | ||||| ||||||||||||||||
Sbjct 282 CGGAGAAGAAGAAACTAACATGCCAAGGCTGAAGA-GAAAGATTGAGATTCAATGGAATG 340
Query 179 ATGTCTCATCTTTTGAAGAGAGTATT-AGTTCACGTGATGAAACTGGAATCCTCAAAATC 237
|||||||||||||||||||||||||| | | | ||||||||||||||||||||||| |||
Sbjct 341 ATGTCTCATCTTTTGAAGAGAGTATTCA-TACTCGTGATGAAACTGGAATCCTCAATATC 399
Query 238 GAGTTGAAAAAACGTCCAACATTCTTCATAGAGACTAATCCACAGGCAGGAAAACACACT 297
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GAGTTGAGAAAACGTCCAACATTCTTCATAGAGACTAATCCACAGGCAGGAAAACACACT 459
Query 298 CAATGGAAACAATTGGATCACGATTTCACCGGAGA-TCATGCTTCTAATTACAGGAGACA 356
||||||||||||||||||| ||||||||||| | | ||| ||||||| || |||||||||
Sbjct 460 CAATGGAAACAATTGGATCGCGATTTCACCG-ACAATCAGGCTTCTACTTGCAGGAGACA 518
Query 357 TACACTTCATTTTCCTCCCGGAGTTCTGCAAAAGAACTTGGAGAAGCTTGTAACCGACAG 416
|||| |||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct 519 TACAATTCATTTTCCTCCCGGAGTTCTGCAAAAGAACTTGGAGAAGCTTCTAACTAATAG 578
Query 417 CTTCTGGTCCAAACTCTATGAA-GTCCCTTTCCCGGTACATGAATCTCGTTACTTCGATA 475
|||||||||||||||||| || ||||||||||||||| | ||||||| || ||||||||
Sbjct 579 CTTCTGGTCCAAACTCTAC-AACGTCCCTTTCCCGGTAGAAGAATCTCTTTGCTTCGATA 637
Query 476 GTGGCTTTGAAAACAAC---TCATCTCGCAACAGCCACAGCCACACAGTTGGCTTTAACG 532
|||||||||||||||| ||||||| ||||||||||| || |||||||||||||| |
Sbjct 638 TTGGCTTTGAAAACAACAACTCATCTCACAACAGCCACAACCTGACAGTTGGCTTTAATG 697
Query 533 TCAACAATGGCCCTCAACATCA-C-TT-TTCTCAAGGAATTGGTGGCGTGGGAGTGGGAG 589
||||| |||||| ||| ||||| | || ||||||||||||||||||||||||||| ||||
Sbjct 698 TCAACTATGGCCATCAGCATCATCATTATTCTCAAGGAATTGGTGGCGTGGGAGTTGGAG 757
Query 590 AAGGAAACTTTA-----GCA------T---GG-CTAACGGTGGATGGCAAAGAAACTCAT 634
|||||||||||| ||| | || |||||||||||||||||||||||||||
Sbjct 758 AAGGAAACTTTAACATAGCACCGCAGTTCAGGGCTAACGGTGGATGGCAAAGAAACTCAT 817
Query 635 ATAGTCCAGTCAATAGTCTGAATTATAACACTGCTAATGAGTT-CTTTGGAATGCAAGCT 693
|||||| || ||||||||||||||||||||||||||||||||| | | ||| ||||||||
Sbjct 818 ATAGTCAAGCCAATAGTCTGAATTATAACACTGCTAATGAGTTGCCTCGGA-TGCAAGCT 876
Query 694 ACC--C-CACCATCGTCTCAAGTGGTTAACGAGCATTATAACACGCAAAACGATTTCACC 750
| | ||||||||||||| ||||||||| | | ||||| |||||||||
Sbjct 877 ATTATCACACCATCGTCTCAGGTGGTTAAC-A---T--------GCAAATGGATTTCACC 924
Query 751 GGTTCACAGTTTGGTTATCACATGAACCAAGACGAGATCCAGAA-GAT 797
|||||||||| | || |||| ||||||||||||||||||| ||| |||
Sbjct 925 GGTTCACAGTATCGTAATCAGATGAACCAAGACGAGATCC-GAAAGAT 971
> Ahg352242 jgi|Araly1|352242|fgenesh1_pg.C_scaffold_6002835
Length=1092
Score = 763 bits (413), Expect = 0.0
Identities = 551/616 (89%), Gaps = 16/616 (3%)
Strand=Plus/Plus
Query 1 ATGAATTTCCCAATCTCCACGATCAGGATTGGCGGATGGGTCGTCGTTGCCAA-AAACCC 59
||||||||||||||||||| ||||| ||||| |||| | ||||| ||| ||||||
Sbjct 163 ATGAATTTCCCAATCTCCATGATCAAAATTGGAACATGGACCCCCGTTG-CAATAAACCC 221
Query 60 TGATGACATTGTGGCCAAATTCTATTTTGCAAAGAAGAAACTTATATGGGAGTTTCTCTT 119
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 TGAAGATATTGTGGCAAAATTCTATTTTGCAAAGAAGAAACTTATATGGGAGTTTCTCTT 281
Query 120 CGGAGAACCAGAGACTAACACGCTGAGGCTGAAACGTAAGATCGAGATTCAATGGAATGA 179
||||||| ||| ||||||| || ||||||||| | |||||||||||||||||||||||
Sbjct 282 CGGAGAAGAAGAAACTAACATGCCAAGGCTGAAAAGAAAGATCGAGATTCAATGGAATGA 341
Query 180 TGTCTCATCTTTTGAAGAGAGTA-TTAGTTCACGTGATGAAACTGGAATCCTCAAAATCG 238
||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||
Sbjct 342 TGTCTCATCTTTTGAAGAGAGTATTTA-TACACATGATGAAACTGGAATCCTCAAAATCG 400
Query 239 AGTTGAAAAAACGTCCAACATTCTTCATAGAGACTAATCCACAGGCAGGAAAACACACTC 298
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 AGTTGAGAAAACGTCCAACATTCTTCATAGAGACTAATCCACAGGCAGGAAAACACACTC 460
Query 299 AATGGAAACAATTGGATCACGATTTCACCGGAGA-TCATGCTTCTAATTACAGGAGACAT 357
|||||||||| ||||||| ||||||||||| | | ||| ||||||| || ||||||||||
Sbjct 461 AATGGAAACAGTTGGATCGCGATTTCACCG-ACAATCAGGCTTCTACTTGCAGGAGACAT 519
Query 358 ACACTTCATTTTCCTCCCGGAGTTCTGCAAAAGAACTTGGAGAAGCTTGTAACCGACAGC 417
||| |||||||||||||||||||||||||||||||||||||||| ||| | || | |||
Sbjct 520 ACAATTCATTTTCCTCCCGGAGTTCTGCAAAAGAACTTGGAGAAACTTCTGACTAATAGC 579
Query 418 TTCTGGTCCAAACTCTATGAA-GTCCCTTTCCCGGTACATGAATCTCGTTACTTCGATAG 476
||||||||||||||||| || ||||||||||||||| | ||||||| || ||||||||
Sbjct 580 TTCTGGTCCAAACTCTAC-AACGTCCCTTTCCCGGTAGAAGAATCTCTTTTCTTCGATA- 637
Query 477 T-GGCTTTGAAAACAA---CTCATCTCGCAACAGCCACAGCCACACAGTTGGCTTTAACG 532
| |||||| ||||||| |||||||| ||||||||||||||| |||||||||||||| |
Sbjct 638 TCGGCTTTAAAAACAATAACTCATCTCACAACAGCCACAGCCAGACAGTTGGCTTTAATG 697
Query 533 TCAACAATGGCCCTCAACATCA-C-TT-TTCTCAAGGAATTGGTGGCGTGGGAGTGGGAG 589
||||| |||||| ||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 698 TCAACTATGGCCTTCAACATCATCATTATTCTCAAGGAATTGGTGGCGTGGGAGTGGGAG 757
Query 590 AAGGAAACTTTAGCAT 605
|||||||||||| |||
Sbjct 758 AAGGAAACTTTAACAT 773
> Ahg943052 jgi|Araly1|943052|scaffold_603596.1
Length=589
Score = 435 bits (235), Expect = 4e-121
Identities = 300/331 (91%), Gaps = 6/331 (2%)
Strand=Plus/Plus
Query 1 ATGAATTTCCCAATCTCCACGATCAGGATTGGCGGATGGGTCGTCGTTGCCAA-AAACCC 59
||||||||||||||||||| ||||| ||||| |||| | ||||| ||| ||||||
Sbjct 184 ATGAATTTCCCAATCTCCATGATCAAAATTGGAACATGGACCCCCGTTG-CAATAAACCC 242
Query 60 TGATGACATTGTGGCCAAATTCTATTTTGCAAAGAAGAAACTTATATGGGAGTTTCTCTT 119
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TGAAGATATTGTGGCAAAATTCTATTTTGCAAAGAAGAAACTTATATGGGAGTTTCTCTT 302
Query 120 CGGAGAACCAGAGACTAACACGCTGAGGCTGAA-ACGTAAGATCGAGATTCAATGGAATG 178
||||||| ||| ||||||| || |||||||| | | ||||||||||||||||||||||
Sbjct 303 CGGAGAAGAAGAAACTAACATGCCAAGGCTGAAGA-GAAAGATCGAGATTCAATGGAATG 361
Query 179 ATGTCTCATCTTTTGAAGAGAGTA-TTAGTTCACGTGATGAAACTGGAATCCTCAAAATC 237
|||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||
Sbjct 362 ATGTCTCATCTTTTGAAGAGAGTATTTA-TACACATGATGAAACTGGAATCCTCAAAATC 420
Query 238 GAGTTGAAAAAACGTCCAACATTCTTCATAGAGACTAATCCACAGGCAGGAAAACACACT 297
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGTTGAGAAAACGTCCAACATTCTTCATAGAGACTAATCCACAGGCAGGAAAACACACT 480
Query 298 CAATGGAAACAATTGGATCACGATTTCACCG 328
||||||||||| ||||||| |||||||||||
Sbjct 481 CAATGGAAACAGTTGGATCGCGATTTCACCG 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38771006589
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5