BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54320.1
Length=1412
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924165 jgi|Araly1|924165|scaffold_105446.1 1781 0.0
Ahg478636 jgi|Araly1|478636|fgenesh2_kg.3__1337__AT3G12740.1 1009 0.0
> Ahg924165 jgi|Araly1|924165|scaffold_105446.1
Length=1092
Score = 1781 bits (964), Expect = 0.0
Identities = 1034/1069 (97%), Gaps = 0/1069 (0%)
Strand=Plus/Plus
Query 163 CCATGAGTTCCAATACGGCGTCGTCCAGCGCGGGGGCAGCCGGATCGGGAGATTCTTCCG 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 CCATGAGTTCCAATACGGCGTCGTCCAGCGCGGGGGCAGCCGGATCGGGAGATTCTTCCG 80
Query 223 CCGCTAGGAAGAATTCAAAGCGACCCAAGTATTCGAAGTTCACACAGCAGGAGCTTCCAG 282
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CCGCCAGGAAGAATTCGAAGCGACCCAAGTATTCGAAGTTCACACAGCAGGAGCTTCCAG 140
Query 283 CTTGCAAGCCAATTCTAACCCCTGGTTGGGTCATTTCGACATTTTTGATAGTCAGTGTTA 342
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 CTTGCAAGCCAATTCTCACCCCTGGTTGGGTCATTTCGACATTTTTGATAGTCAGTGTTA 200
Query 343 TCTTTATTCCCCTTGGAGTTATCTCCCTTTTCGCTTCCCAGGATGTTGTGGAGATCGTTG 402
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 201 TCTTTATTCCCCTTGGAGTTATCTCTCTTTTCGCTTCCCAGGATGTTGTGGAGATCGTTG 260
Query 403 ATCGGTATGATACTGAGTGCATTCCGGCACCTGCTAGGACTAACAAGGTTGCATATATTC 462
| |||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 261 ACCGGTATGATACTGAATGCATTCCGGAACCTGCTAGGACTAACAAGATTGCATATATTC 320
Query 463 AAGGAGATGGAGATAAAGTTTGTAACCGGGATCTTAAAGTGACAAAGCGTATGAAGCAAC 522
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
Sbjct 321 AAGGAGATGGAGATAAAGTTTGTACCCGGGATCTTAAAGTGACAAAGCGTATGAAACAGC 380
Query 523 CTATCTATGTTTATTACCAACTTGAGAATTTCTACCAGAATCACCGAAGGTATGTAAAAA 582
|| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 381 CTGTCTATGTTTATTACCAGCTTGAGAACTTCTACCAGAATCACCGAAGGTATGTAAAAA 440
Query 583 GTCGAAGTGATTCACAGTTGAGAAGTACAAAATACGAGAATCAAATAAGTGCATGCAAGC 642
| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 441 GCCGAAGTGATTCACAGTTGAGAAGTCCAAAATACGAGAATCAAATAAGCGCATGCAAGC 500
Query 643 CTGAGGATGATGTTGGTGGGCAGCCGATTGTGCCGTGTGGTCTAATTGCTTGGAGTCTTT 702
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 501 CTGAGGATGATGTTGGTGGGCAGCCGATTGTGCCGTGTGGTCTAATTGCTTGGAGTCTCT 560
Query 703 TTAACGACACATACGCGTTATCAAGAAACAATGTAAGCCTAGCTGTGAACAAAAAAGGCA 762
|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 561 TTAATGACACATACGCCTTATCAAGAAACAATGTAAGCCTAGCTGTAAACAAAAAAGGCA 620
Query 763 TTGCATGGAAGAGTGACAAGGAACACAAGTTTGGGAACAAGGTCTTCCCCAAGAATTTTC 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 TTGCATGGAAGAGTGACAAGGAACACAAGTTTGGGAACAAGGTCTTCCCCAAGAATTTTC 680
Query 823 AAAAGGGGAATATCACAGGTGGTGCTACTTTAGATCCAAGAATACCGCTTAGTGAACAAG 882
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 681 AAAAGGGGAATATCACAGGTGGTGCTACTTTAGATCCAAAAATACCGCTTAGTGAACAAG 740
Query 883 AAGATCTCATTGTGTGGATGAGAACCGCAGCATTGCCAACATTTAGAAAACTTTACGGAA 942
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAGATCTCATCGTGTGGATGAGAACCGCAGCATTGCCAACATTTAGAAAACTTTACGGAA 800
Query 943 AGATAGAGTCTGACCTCGAGATGGGTGACACCATACACGTTAAGCTGAACAACAACTACA 1002
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 801 AGATAGAGTCTGACCTCGAGATGGGTGACACCATACACGTTACGCTGAAGAACAACTACA 860
Query 1003 ACACGTACAGCTTCAATGGAAAGAAGAAGCTTGTTTTGTCAACCACTAGTTGGCTGGGTG 1062
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 861 ACACTTACAGTTTCAATGGGAAGAAGAAGCTTGTTTTGTCAACCACTAGTTGGCTGGGTG 920
Query 1063 GGAAGAACGATTTCCTTGGCATTGCTTACCTGACAGTTGGCGGGATCTGTTTCATTTTGG 1122
||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 921 GGAAGAATGATTTCCTCGGCATTGCTTACCTGACAGTTGGCGGGATCTGTTTCTTTTTGG 980
Query 1123 CCCTCGCATTTACCATCATGTACCTTGTGAAACCCAGGCGTCTTGGAGATCCGTCCTACT 1182
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 981 CCCTCGCATTTACCATCATGTACCTTGTGAAACCCAGGCGACTTGGAGATCCATCCTACT 1040
Query 1183 TGTCATGGAATAGAAATCCTGGAGGTCGGTAACAAGCTTGGAAAGGGAG 1231
||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1041 TGTCATGGAATAGAAATCCCGGAGGTCGGTAACAAGCTTGGAGAGGGAG 1089
> Ahg478636 jgi|Araly1|478636|fgenesh2_kg.3__1337__AT3G12740.1
Length=1451
Score = 1009 bits (546), Expect = 0.0
Identities = 879/1036 (85%), Gaps = 37/1036 (4%)
Strand=Plus/Plus
Query 201 GCCGGATCGGGAGATTCTTCCGCCGCTAGGAAG-AATTCAAAGCGACCCAAGTATTCGAA 259
|||||||| | ||||||||||||||| || || ||||| ||||||||||||||||||||
Sbjct 225 GCCGGATCTGTAGATTCTTCCGCCGCCCGG-AGAAATTCCAAGCGACCCAAGTATTCGAA 283
Query 260 GTTCACACAGCAGGAGCTTCCAGCTTGCAAGCCAATTCTAACCCCTGGTTGGGTCATTTC 319
|| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 284 ATTTACACAGCAGGAGCTTCCAGCTTGCAAGCCAATTCTTACGCCTGGTTGGGTGATTTC 343
Query 320 GACATTTTTGAT-AGTCAGTGTTATCTTTATTCCCCTTGGAGTTATCTCCCTTTTCGCTT 378
||||||||||| | ||||||||||||| |||||||| |||||||| || ||||| ||||
Sbjct 344 AACATTTTTGATCA-TCAGTGTTATCTTCATTCCCCTCGGAGTTATTTCACTTTTTGCTT 402
Query 379 CCCAGGATGTTGTGGAGATCGTTGATCGGTATGATACTG-AGTGCATTCCGGC-ACCTGC 436
| ||||||||||| |||||||||||||||||||||| || | ||||| || | | |||
Sbjct 403 CTCAGGATGTTGTTGAGATCGTTGATCGGTATGATAGTGCA-TGCATACCT-CTAACTGA 460
Query 437 T-AGGACTAACAAGGTTGCATATATTCAAGGAGATGGAGATAAAGT-TTGTAACCGGGAT 494
| ||| |||||||||||||||| |||||||||| |||| ||||| | ||||| |||| |
Sbjct 461 TCAGG-CTAACAAGGTTGCATACATTCAAGGAGCTGGAAATAAA-TCTTGTACCCGG-AC 517
Query 495 -CTTAAAGTGACAAAGCGTATGAAGCAACCTATCTATGTTTATTACCAACTTGAGAATTT 553
|| | |||| | |||||||||||||| |||||||| || |||||||| |||||||| ||
Sbjct 518 GCTGATAGTGCCTAAGCGTATGAAGCAGCCTATCTACGTATATTACCAGCTTGAGAACTT 577
Query 554 CTACCAGAATCACCGAAGGTATGTAAAAAGTCGAAGTGATTCACAGTTGAGAAGTACAAA 613
||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||| ||
Sbjct 578 CTACCAGAATCACCGCAGGTATGTGAAAAGCCGAAGTGATTCACAATTGAGAAGTTTGAA 637
Query 614 ATACGAGAATCAAATA-AGTGCATGCAAGCCTGAGGATGATGTTGGTGGGCAGCCGATTG 672
| | |||||||||||| | ||||||||||||||||||||||||||||||| ||| ||||
Sbjct 638 AGATGAGAATCAAATAGAC-GCATGCAAGCCTGAGGATGATGTTGGTGGGCTGCCAATTG 696
Query 673 TGCCGTGTGGTCTAATTGCTTGGAGTCTTTTTAACGACACATACGCGT-TATCAAGAAAC 731
|||| ||||||||||||||||||||||| ||||| ||||||||||| | ||||||||||
Sbjct 697 TGCCATGTGGTCTAATTGCTTGGAGTCTCTTTAATGACACATACGC-TCTATCAAGAAAT 755
Query 732 AATGTAAGCCT--AGCTGTGAACAAAAAAGGCATTGCATGGAAGAGTGACAAGGAACACA 789
|| | || | ||| || ||||||||||| || |||||||||||||||| ||||||||
Sbjct 756 AACC-A-GCGTTTAGCGGTAAACAAAAAAGGAATCGCATGGAAGAGTGACAGGGAACACA 813
Query 790 AGTTTGGGAACAAGG-TCTTCCCCAAGAATTTTCAAAAGGGGAATATCACAGGTGGTGCT 848
|||||||||| |||| | || || ||||| ||||| ||||| ||| | | ||||||||
Sbjct 814 AGTTTGGGAA-AAGGGTGTTTCCTAAGAACTTTCAGAAGGGCAATCTGATTGGTGGTGCC 872
Query 849 ACTTTAGATCCAAGA-ATACCGCTT-AGTGAACAAGAAGATCTCATTGTGTGGATGAGAA 906
| ||||||||| | | ||| || ||||| ||||| ||||| || ||||||||||| |
Sbjct 873 GGTCTAGATCCAA-ATACACCA-TTGAGTGACCAAGAGGATCTGATCGTGTGGATGAGGA 930
Query 907 CCGCAGCATTGCCAACATTTAGAAAACTT-TACGGAAAGATAGAGTCTGACCTCGAGATG 965
| ||||| |||||||||||||||||| || ||||| ||||||||| |||| | |||| |
Sbjct 931 CTGCAGCGTTGCCAACATTTAGAAAA-TTATACGGGAAGATAGAGAGTGACTTGGAGAAG 989
Query 966 GGTGACACCATACACGTTAAGCTGAACAACAACTACAACACGTACAGCTTCAATGGAAAG 1025
||||| | |||||| || | ||| | |||||||||||||| ||||| |||| ||| |||
Sbjct 990 GGTGATAACATACAAGTGACTCTGCAGAACAACTACAACACATACAGTTTCAGTGGGAAG 1049
Query 1026 AAGAAGCTTGTTTTGTCAACCACTAGTTGGCTGGGTGGGAAGAACGATTTCCTTGGCATT 1085
|||||||||||| ||||||| || |||||||| ||||| |||||||| ||||||||||||
Sbjct 1050 AAGAAGCTTGTTCTGTCAACAACAAGTTGGCTTGGTGGAAAGAACGACTTCCTTGGCATT 1109
Query 1086 GCTTACCTGACAGTTGGCGGGA-TCTGTTTCATT-TTGGCCCTCGCATTTACCATCATGT 1143
|||||||| || ||||| |||| |||||||| || ||||| || ||||||||| ||||||
Sbjct 1110 GCTTACCTCACTGTTGG-GGGAATCTGTTTC-TTCTTGGCACTTGCATTTACCGTCATGT 1167
Query 1144 ACCTTGTGAAACCCAGGCGTCTTGGAGATCCGT-CCTACTTGTCATGGAATAGAAATCCT 1202
| ||||||||||||||||| || || ||||| | |||||||||| ||||| |||| ||||
Sbjct 1168 ATCTTGTGAAACCCAGGCGACTCGGTGATCC-TACCTACTTGTCGTGGAACAGAATTCCT 1226
Query 1203 GGAGGTCGGTAA-CAA 1217
|||||||||||| |||
Sbjct 1227 GGAGGTCGGTAAACAA 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52793079570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5