BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54330.1
Length=1117
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474694 jgi|Araly1|474694|fgenesh2_kg.1__4648__AT1G54330.1 1672 0.0
Ahg326242 jgi|Araly1|326242|fgenesh1_pm.C_scaffold_6001462 67.6 2e-10
> Ahg474694 jgi|Araly1|474694|fgenesh2_kg.1__4648__AT1G54330.1
Length=999
Score = 1672 bits (905), Expect = 0.0
Identities = 968/999 (97%), Gaps = 1/999 (0%)
Strand=Plus/Plus
Query 35 tctctcGTTTTCTAACGCATACAC-TTTGAATGGCGCCCATGAGTTTGCCTCCAGGATTC 93
|||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCGTTTTCTACCACATACACTTTTGAATGGCGCCCATGAGTTTGCCTCCAGGATTC 60
Query 94 AGGTTTCATCCCACTGATGAAGAACTGGTGGCTTACTATCTTGATAGGAAGGTCAACGGC 153
||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||
Sbjct 61 AGGTTTCATCCCACTGATGAAGAGCTGGTGGCTTACTATCTGGATCGGAAGGTCAACGGC 120
Query 154 CAAGCCATTGAGCTCGAGATCATCCCAGAAGTTGATCTTTATAAATGCGAGCCATGGGAC 213
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 CGAGCCATTGAGCTCGAGATCATCCCAGAAGTTGATCTCTATAAATGCGAGCCATGGGAC 180
Query 214 TTGCCTGAAAAGTCATTTTTGCCGGGAAACGACATGGAATGGTACTTTTACAGCACAAGG 273
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TTGCCTGAAAAGTCATTTTTGCCGGGGAACGACATGGAATGGTACTTTTACAGCACAAGG 240
Query 274 GATAAGAAGTATCCAAATGGCTCTAGGACGAACCGTGCGACCCGAGCGGGTTACTGGAAG 333
||||||||||||||||| || || ||||| |||||||||||||||| |||||||||||||
Sbjct 241 GATAAGAAGTATCCAAACGGGTCGAGGACAAACCGTGCGACCCGAGAGGGTTACTGGAAG 300
Query 334 GCCACGGGGAAAGATCGTACAGTAGAATCAAAGAAGATGAAGATGGGAATGAAGAAGACA 393
||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||
Sbjct 301 GCCACAGGGAAAGATCGTATAGTAGAATCGAAGAAAATGAAGATGGGAATGAAGAAGACA 360
Query 394 CTGGTTTATTATAGAGGAAGGGCTCCTCATGGCCTTCGTACTAATTGGGTCATGCATGAA 453
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 CTGGTTTACTATAGAGGAAGGGCTCCTCATGGCCTTCGTACTAATTGGGTGATGCATGAA 420
Query 454 TATCGTCTCACGCACGCTCCTTCCTCCTCCTTGAAGGAGTCGTATGCATTGTGCCGAGTG 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TATCGTCTCACGCACGCTCCTTCCTCCTCCTTGAAGGAGTCGTATGCATTGTGCCGAGTG 480
Query 514 TTTaagaagaacatacaaattccaaagagaaaaggggaagaagaagaagcagaagaagag 573
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTAAAAAGAACATACAAATTCCAAAGAGAAAAGGGGAAGAAGAAGAAGCAGAAGAAGAG 540
Query 574 agcactagtgtaggaaaagaagaggaagaagaaaaggagaagaagtggagaaaaTGTGAT 633
|||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 541 AGCACTTGTGTAGGAAAAGAGGAGGAAGAGGAAAAGGAGAAGAAGTGGAGAAAATGTGAT 600
Query 634 GGTAATTATATTGAAGACGAGAGCTTGAAAAGAGCATCCGCGGAGACATCTTCATCAGAG 693
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGTAATTGTATTGAAGACGAGAGCTTGAAAAGAGCATCCGCGGAGACATCTTCATCAGAG 660
Query 694 CTAACTCAAGGGGTCCTTTTAGACGAAGCAAACAGCTCATCCATATTTGCTCTTCATTTC 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTAACTCAAGGGGTCCTTTTAGACGAAGCAAACAGCTCATCCATATTTGCTCTTCATTTC 720
Query 754 TCATCTTCTCTTCTGGACGATCATGATCATCTTTTCTCAAACTATTCTCATCAGCTTCCA 813
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 721 TCATCTTCTCTTCTGGACGATCATGATCAACTTTTCGCAAACTATTCTCATCAGCTTCCA 780
Query 814 TATCATCCTCCTCTTCAACTCCAAGATTTCCCTCAACTTTCTATGAACGAAGCAGAGATT 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TATCATCCTCCTCTTCAACTCCAAGATTTCCCTCAACTTTCTATGAACGAAGCAGAGATT 840
Query 874 ATGTCAATCCAACAAGACTTTCAATGCAGAGACTCTATGAACGGGACACTTGACGAAATC 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATGTCAATCCAACAAGACTTTCAATGCAGAGACTCTATGAACGGGACACTTGACGAAATC 900
Query 934 TTCTCTTCTTCCGCCACTTTCCCCGCTTCCCTTTGATAAATCCATATCTCATACTATCAT 993
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 901 TTCTCTTCTTCCGCCACTTTCCCCACTTCCCTTTGATAAATCCATATCTCATACTATCAT 960
Query 994 CTAGTACTTCTTTTCTCAACTTATTTAAATATACTCGGG 1032
| |||||||||||||||||||||||||| |||| |||||
Sbjct 961 CCAGTACTTCTTTTCTCAACTTATTTAATTATATTCGGG 999
> Ahg326242 jgi|Araly1|326242|fgenesh1_pm.C_scaffold_6001462
Length=1005
Score = 67.6 bits (36), Expect = 2e-10
Identities = 71/87 (82%), Gaps = 5/87 (6%)
Strand=Plus/Plus
Query 377 TGGGAATGAAGAAGACACTGGT-TTATTATAGAGGAAGGGCTCCTCATGG-CCTTCGTAC 434
|||| |||||||| ||||| || || |||||||||||| ||||| | || | ||
Sbjct 357 TGGG-ATGAAGAAAACACTTGTGTT-TTATAGAGGAAGAGCTCCAAAAGGTGAAAAG-AC 413
Query 435 TAATTGGGTCATGCATGAATATCGTCT 461
|||||||||||||||||||||||||||
Sbjct 414 TAATTGGGTCATGCATGAATATCGTCT 440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41630225364
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5