BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54360.2
Length=1718
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474701 jgi|Araly1|474701|fgenesh2_kg.1__4655__AT1G54360.4 1871 0.0
> Ahg474701 jgi|Araly1|474701|fgenesh2_kg.1__4655__AT1G54360.4
Length=1553
Score = 1871 bits (1013), Expect = 0.0
Identities = 1179/1255 (94%), Gaps = 28/1255 (2%)
Strand=Plus/Plus
Query 215 CAGGAAGCTATCAAATGCATGCGTCATGCTCGACGCACCACTTTAATGGCTCATGATGTC 274
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 118 CAGGAAGCTATCAAATGCATGCGCCATGCTCGCCGCACCACTTTAATGGCTCATGATGTC 177
Query 275 GATTCTGCTCTTCATTTCAGGAATTTGGAG----CCTA--CCTCT--------G------ 314
|||||||||||||||||||||||||||||| ||| ||||| |
Sbjct 178 GATTCTGCTCTTCATTTCAGGAATTTGGAGGTTTCCTCTTCCTCTCTTCTCCTGCCTACC 237
Query 315 ---G-CTCCAAAAGTATGCGGTTCAAGAGAGCTCCTGAGAACAGAGATCTATACTTCTTC 370
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 238 TCCGGCTCCAAAAGTATGCGGTTCAAGAGAGCTCCTGAGAACAGAGATCTCTACTTCTTG 297
Query 371 GATGACAAAGATGTCGAGCTCAAGAATGTTATCGAAGCTCCTCTACCAAATGCACCTCCT 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GATGACAAAGATGTCGAGCTCAAGAATGTTATCGAAGCTCCTCTACCAAATGCACCTCCT 357
Query 431 GATGCATCTGTTTTC-CTTCATTGGTTGGCAATTGATGGTATTCAACCTTCCATTCCACA 489
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GATGCATCTATTTTCTCT-CATTGGTTGGCAATTGATGGTATTCAACCTTCCATTCCACA 416
Query 490 GAATTCTCCTCTCCAAGCCATATCTGACCTTAAACGATCGGAATATAAGGACGATGGCTT 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GAATTCTCCTCTCCAAGCCATATCTGACCTTAAACGATCGGAATATAAGGACGATGGCTT 476
Query 550 GGCTGCTAGACAGGTGCTTTCTAAGGACCTTCAGATTTACTTTGACAAAGTCACGGAGTG 609
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 477 GGCTGCTAGACAGGTGCTCTCTAAGGACCTTCAGATTTACTTTGACAAAGTCACCGAGTG 536
Query 610 GGCTTTGACTCAATCTGGCTCCACCCTCTTTAGACAAGCACTCGCCAGCTTGGAAATTGA 669
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 537 GGCTTTGACTCAATCTGGCTCCACCCTCTTTAGACAAGCACTCTCCAGCTTGGAAACTGA 596
Query 670 TCCTGGACTCCACCCATTAGTTCCCTTTTTCACTTCTTTCATCGCTGAAGAGATTGTCAA 729
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CCCTGGACTCCACCCTTTAGTTCCCTTTTTCACTTCTTTCATCGCTGAAGAGATTGTCAG 656
Query 730 AAACATGGATAATTATCCAATCTTGTTGGCTTTGATGCGTCTTGCTAGAAGCCTCCTTCA 789
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GAACATGGATAATTACCCAATCTTGTTGGCTTTGATGCGTCTTGCTAGAAGCCTCCTTCA 716
Query 790 TAACCCTCATGTACATATTGAGCCATATCTGCATCAGTTGATGCCGTCTATTATCACTTG 849
||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 717 TAACCCTCATGTACATATTGAACCATATCTGCATCAATTCATGCCGTCTATTATCACTTG 776
Query 850 CCTTATTGCCAAGCGCTTAGGAAGAAGGTCATCTGATAATCACTGGGACTTGAGAAACTT 909
||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 777 CCTCATTGCCAAGAGCTTAGGAAGAAGGTCATCTGATAATCACTGGCACTTGAGAAACTT 836
Query 910 CACTGCCAGCACAGTTGCTTCAACGTGCAAAAGGTTTGGACACGTTTATCACAATTTGTT 969
||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 837 CACTGCCAGTACAGTTGCTTCAACGTGCAAAAGGTATGGACACGTTTATCACAACTTGTT 896
Query 970 GCCACGTGTCACAAGATCACTGCTTCATACCTTTTTGGACCCAACCAAGGCACTCCCACA 1029
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 897 GCCGCGTGTTACAAGATCACTGCTTCATACCTTTTTGGACCCAACCAAGGCACTTCCACA 956
Query 1030 ACACTATGGGGCAATTCAAGGGATGGTAGCCCTTGGGCTTAATATGGTTCGCTTTCTTGT 1089
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 957 ACACTATGGGGCAATTCAAGGGATGGTAGCCCTTGGGCTTAAAATGGTTCGCTTTCTTGT 1016
Query 1090 TCTCCCAAACCTAGGGCCGTATTTGCTGCTTCTTTTACCTGAAATGGGACTTGAGAAGCA 1149
|||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct 1017 TCTCCCAAACCTAGGGCCATATTTGCTGCTTCTTTTACCTGAAATGGAACCTGAGAAGCA 1076
Query 1150 GAAGGAAGAAGCTAAGAGGCATGGGGCTTGGCTTGTTTATGGAGCGTTGATGGTGGCAGC 1209
|||||| ||||| |||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1077 GAAGGACGAAGCGAAGAGGCACAGGGCTTGGCTCGTTTATGGAGCGTTGATGGTGGCAGC 1136
Query 1210 TGGTCGATGCCTATATGA-ACGGCTTAAAACATCTGAGACACTGCTGTCTCCTCCAACTA 1268
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct 1137 TGGTCGATGCCTATATGAGA-GGCTTAAAACATCTGAGACACTGCTGTCTCCTCCAAATA 1195
Query 1269 GCTCTGTCTGGAAGACAAATGGAAAGCTCACCAGCCCCAGGCAAAGTAAACGCAAAGCAA 1328
|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||
Sbjct 1196 GCTCTGTCTGGAAGACAAATGGAAAGCTTACCAGTCCCAGCCAAAGTAAACGCAAGGCAA 1255
Query 1329 GCAGTGACAACTTAACTCATCAACCACCACTGAAGAAGATAGCAGTAGGGGGAATTATAC 1388
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1256 GTAGTGACAACTTAACTCATCAACCACCACTGAAAAAGATAGCAGTAGGGGGAATTATGC 1315
Query 1389 AAATGAGCTCCACACAAATGCAGATGCGCGGAACCACAACAGTCCCTCAACAGTC 1443
||||||||||| |||| |||||||||| |||||||||||||||||| ||||||||
Sbjct 1316 AAATGAGCTCCGCACAGATGCAGATGCACGGAACCACAACAGTCCCGCAACAGTC 1370
Score = 220 bits (119), Expect = 2e-56
Identities = 153/169 (91%), Gaps = 3/169 (2%)
Strand=Plus/Plus
Query 1487 ATTGCTCCGAAGACTTCAGCTGCTGC-AGGCACTGACGTCGACAACTATCTCTTTCCTCT 1545
|||||||||| ||||||||||||| | || |||||||| ||||||||||||||||||||
Sbjct 1387 ATTGCTCCGAGGACTTCAGCTGCT-CTGGGTACTGACGTGGACAACTATCTCTTTCCTCT 1445
Query 1546 TTTTGAGTATTTTGGTGAGAGCATGCTTATGTTCACCCCCACACATGAGCTCAGTTTCTT 1605
|||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1446 TTTTGAATATTTTGGCGAGAGCATGCTTATGTTCACCCCCAAACATGAGCTCAGTTTCTT 1505
Query 1606 CTTGTAATAGATTATTGACATGGTAATTGTATGTACCACAATAAATACA 1654
|||||||||||| ||| ||||| || ||| ||||||||||| ||||||
Sbjct 1506 CTTGTAATAGATCATTTACATGC-AAGTGTTTGTACCACAATGAATACA 1553
Score = 185 bits (100), Expect = 8e-46
Identities = 114/121 (94%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 29 ATGGTGACGAAAGAATCCATTGAAGTGATAGCTCAGAGCATTGGACTCTCCACTCTTTCT 88
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGTGACGAAGGAATCCATTGAAGTGATAGCTCAGAGCATTGGACTCTCCAGTCTTTCT 60
Query 89 CCGGACGTCTCAGCCGCTCTTGCTCCCGATGTCGAGTATCGCGTCCGAGAGGTCATGCAG 148
||||| |||||||| |||||||||||||||||||||||||| |||| |||||| ||||||
Sbjct 61 CCGGAAGTCTCAGCGGCTCTTGCTCCCGATGTCGAGTATCGTGTCCTAGAGGTGATGCAG 120
Query 149 G 149
|
Sbjct 121 G 121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64448694540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5