BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54370.1
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474702 jgi|Araly1|474702|fgenesh2_kg.1__4656__AT1G54370.1 2830 0.0
> Ahg474702 jgi|Araly1|474702|fgenesh2_kg.1__4656__AT1G54370.1
Length=1769
Score = 2830 bits (1532), Expect = 0.0
Identities = 1696/1774 (96%), Gaps = 16/1774 (1%)
Strand=Plus/Plus
Query 4 AATGGAGGAAGTGATGATTTCTCCGGTGGAGCACGACCCTCAGGGCCAGGTTAAGCAGCA 63
|||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 AATGGAGGAACTGGTGATTTCTCCGGTGGACCACGACCCTCAGGGCCAGGTTAAGCAGCA 60
Query 64 GCAAGCGGCCGGCGTTGGTATACTGCTTCAGATTATGATGCTCGTGCTTTCCTTCGTTCT 123
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 GCAAGCCGCCGGCGTTGGTATACTGCTTCAGATTATGATGCTCGTCCTTTCCTTCGTTCT 120
Query 124 CGGCCATGTCCTCCGCCGTCATCGATTCCACTATCTTCCTGAAGCCAGCGGTTCGCTTCT 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGGCCATGTCCTCCGCCGTCATCGATTCCACTATCTTCCTGAAGCCAGCGGTTCGCTTCT 180
Query 184 CATTGGTTTAATCGTCGGTATACTTGCTAATATCTCCGATACTGAGACTAGCATTAGGAC 243
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CATTGGTTTAATCGTCGGTGTACTTGCTAATATCTCCGATACTGAGACTAGCATTAGGAC 240
Query 244 GTGGTTTAATTTCCACGAAGAGTTCTTCTTCTTGTTTTTGTTGCCTCCCATCATATTCCA 303
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 GTGGTTTAATTTCCACGAGGAGTTCTTCTTCTTGTTTCTGTTGCCTCCCATCATATTCCA 300
Query 304 GTCAGGTTTCAGTCTTCAACCTAAACCATTCTTTTCTAACTTTGGAGCCATTGTTACCTT 363
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 301 GTCAGGTTTCAGTCTTCAACCTAAACCATTCTTCTCTAACTTTGGAGCCATTGTTACCTT 360
Query 364 TGCTATCATCGGAACTTTTGTCGCTTCAGTTGTTACTGGTGGTCTGGTTTATCTTGGCGG 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGCTATCATCGGAACTTTTGTCGCTTCAGTTGTTACTGGTGGTCTGGTTTATCTTGGCGG 420
Query 424 CTCTATGTATCTCATGTATAAACTTCCCTTTGTTGAGTGTCTTATGTTTGGTGCACTTAT 483
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 CTCTATGTATCTCATGTATAAACTTCCATTTGTTGAGTGTCTTATGTTTGGTGCACTTAT 480
Query 484 ATCAGCTACGGACCCTGTCACTGTACTCTCTATATTCCAGGATGTGGGCACCGATGTTAA 543
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 481 ATCAGCTACGGACCCTGTCACTGTACTGTCTATATTCCAGGATGTGGGCACCGATGTCAA 540
Query 544 CCTGTATGCTTTGGTCTTTGGAGAATCAGTTCTGAATGATGCTATGGCAATATCATTGTA 603
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 541 CTTGTATGCTTTGGTCTTTGGAGAATCAGTTTTGAATGATGCTATGGCAATATCATTGTA 600
Query 604 CAGAACAATGTCCTTAGTAAACCGCCAGTCCTCGTCTGGGGAACATTTTTTCATGGTGGT 663
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 601 CAGAACAATGTCCTTAGTAAACCGCCAGTCCTCGTCTGGGGAACATTTTCTCATGGTGGT 660
Query 664 GATCAGGTTTTTTGAGACTTTTGCTGGCTCAATGTCTGCAGGGGTTGGGGTTGGATTCAC 723
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GATCAGGTTTCTTGAGACTTTTGCTGGCTCAATGTCTGCAGGGGTTGGGGTTGGATTCAC 720
Query 724 TTCAGCTTTACTCTTTAAGTATGCAGGATTGGACACCGAGAATCTTCAGAACTTGGAGTG 783
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 721 TTCAGCTTTACTCTTTAAGTATGCAGGATTGGATACTGAGAATCTTCAGAACTTGGAGTG 780
Query 784 TTGTCTCTTTGTACTTTTCCCGTATTTTTCATACATGCTTGCAGAAGGTGTTGGTCTCTC 843
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TTGTCTCTTTGTGCTTTTCCCGTATTTTTCATACATGCTTGCAGAAGGTGTTGGTCTCTC 840
Query 844 CGGCATTGTTTCTATACTCTTCACAGGAATTGTTATGAAGCGCTACACTTTCTCAAATCT 903
||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 841 CGGCATTGTGTCTATACTCTTCACAGGAATTGTTATGAAACGTTACACTTTCTCAAATCT 900
Query 904 CTCAGAAGCTTCACAGAGTTTCGTATCTTCtttttttCACTTGATATCTTCGCTAGCAGA 963
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 901 CTCAGAAGCTTCACAGAGTTTCGTATCTTCTTTTTTTCACTTGATATCCTCGCTGGCTGA 960
Query 964 AACTTTCACGTTCATTTACATGGGATTTGATATTGCCATGGAGCAGCATAGCTGGTCCCA 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AACTTTCACGTTCATTTACATGGGATTTGATATTGCCATGGAGCAGCATAGCTGGTCCCA 1020
Query 1024 TGTTGGGTTTATCCTTTTCTCTATTTTGTTTATTGGCGTGGCTAGGGCTGTCAATGTATT 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGTTGGGTTTATCCTTTTCTCTATTTTGTTTATTGGCGTGGCTAGGGCTGTCAATGTATT 1080
Query 1084 TGGGTGTGCATATTTGGTCAACCTATTTAGACAGGAGAACCAGAAGATACCTATGAAGCA 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TGGGTGTGCATATTTGGTCAACCTATTTAGACAGGAGAACCAGAAGATACCTATGAAGCA 1140
Query 1144 CCAAAAAGCCCTTTGGTATAGTGGACTTCGAGGGGCAATGGCATTTGCACTTGCACTTCA 1203
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1141 CCAAAAAGCCCTTTGGTATAGTGGACTTCGAGGGGCAATGGCATTTGCGCTTGCACTTCA 1200
Query 1204 ATCACTTCATGATCTACCAGAGGGTCACGGCCAAATCATCTTTACTGCAACCACAACTAT 1263
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1201 ATCACTTCATGACCTACCAGAGGGTCACGGCCAAATCATCTTTACTGCAACCACAACCAT 1260
Query 1264 TGTTGTTGTCACGGTTTTACTAATAGGAGGTTCGACAGGTAAAATGTTGGAAGCTTTGGA 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TGTTGTTGTCACGGTTTTACTAATAGGAGGTTCGACAGGTAAAATGTTGGAAGCTTTGGA 1320
Query 1324 AGTTGTAGGTGACGATCTTGATGACTCCATGTCTGAAGGCTTTGAAGAGAGCGATCATCA 1383
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 AGTTGTAGGTGATGATCTTGATGACTCCATGTCTGAAGGCTTTGAAGAGAGCGATCATCA 1380
Query 1384 GTATGTCCCTCCTCCTTTTAGCATTGGAGCTTCATCTGACGAGGATACATCATCATCAGG 1443
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1381 GTATGTCCCTCCTCCTTTTAGCATTGGAGCTTCATCTGACGAGGATACCTCATCCTCAGG 1440
Query 1444 AAGCAGGTTCAAGATGAAGCTGAAGGAGTTTCACAAAACCACTACATCATTCACCGCGTT 1503
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1441 AAGCAGGTTCAAGATGAAGCTGAAAGAGTTTCACAAAACCACTACATCATTCACCGCGTT 1500
Query 1504 GGACAAAAACTTTCTGACTCCGTTCTTCACAACTAATAGTGGAGATGGAGATGGAGATGG 1563
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1501 GGACAAAAACTTTCTGACACCGTTCTTCACAACTAACAGTGGAGATGGAGATGGAGATGG 1560
Query 1564 G---G-AG--TAGCATGGAAAAGATGTGTATTTGTGGTCCAGGCCAAGCTATAATTAG-A 1616
| | || |||| |||||| |||| |||||||||||||||||||| | ||||||| |
Sbjct 1561 GAATGGAGAGTAGCGTGGAAA-GATGAATATTTGTGGTCCAGGCCAAGTTTTAATTAGTA 1619
Query 1617 GT-ACA--CATATGTCTATGTAAGATTAACACTGGTTGATTTTACCTCTCGCAAAATGCC 1673
| ||| || ||| ||||||||||||| ||| |||| |||||||||||| || ||||||
Sbjct 1620 TTCACATGCAAATGCCTATGTAAGATTACCACGGGTTAATTTTACCTCTCACAGAATGCC 1679
Query 1674 CACTATAAAGTTGACGATTTCCAAGACATTTCGAAAT-ATTATATAGATGTATTTATTGT 1732
| || |||| ||||| || | | ||| || ||||| | |||||||| |||||| |||||
Sbjct 1680 CGCTTTAAATTTGACAATCTACGAGATATCTCGAA-TGATTATATA--TGTATTCATTGT 1736
Query 1733 GGTACATACAATTACCATGTCAATAATCTATTAC 1766
|||||| | | || | |||| |||||||||||||
Sbjct 1737 GGTACAAAGACTTGC-ATGTAAATAATCTATTAC 1769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66505567770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5