BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G54380.1 Length=1879 Score E Sequences producing significant alignments: (Bits) Value Ahg474711 jgi|Araly1|474711|fgenesh2_kg.1__4665__AT1G54380.1 1631 0.0 Ahg952207 jgi|Araly1|952207|scaffold_46000001.1 340 2e-92 Ahg483344 jgi|Araly1|483344|fgenesh2_kg.4__2404__AT2G42510.1 320 2e-86 > Ahg474711 jgi|Araly1|474711|fgenesh2_kg.1__4665__AT1G54380.1 Length=1756 Score = 1631 bits (883), Expect = 0.0 Identities = 1023/1090 (94%), Gaps = 11/1090 (1%) Strand=Plus/Plus Query 566 GTGGAGTAGAAAACAATGGGAAGCAGTTTAGGAGATTGTACACTAGGAAACAATTGGAGT 625 |||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 666 GTGGAGGAGAAAACAATGGGAAGCAGTTTAGGAGAGTGTACACTAGGATCCAATTGGAGT 725 Query 626 CAATGAGGTTTGCCCACATTGTGAATCAGAAGAACCTGTGGAGTGAGATGTATTCTAGGA 685 |||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||| Sbjct 726 CAATGAGGTTTGCCCACACTGTGAATCAGAAGAAACTGTGGAGTGAGATGTATGCTAGGA 785 Query 686 TTCTACCTGAGGTGGTGACTGAGTATGAAAGTTTAGTTTATGTGAAGAATTACAAGAGTT 745 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 786 TTCTACCTGAGGTGGTGACTGAGTATGAAAGTTTAGTTTATCTGAAGAATTACAAGAATT 845 Query 746 CAAAGTCTAATCGTGTTCGTGGGCGAACGGAGAGTGGCAATGAAGAAAATTTGGGGACTG 805 ||||||||||||| |||||||||| ||| |||||| ||| || |||||||||||| |||| Sbjct 846 CAAAGTCTAATCGGGTTCGTGGGCAAACCGAGAGTTGCATTGGAGAAAATTTGGGTACTG 905 Query 806 AAGAAGGAACGGAGG-----AC-CCTGAAGACTACACTGACGATAATGATGATTACAATA 859 | |||||| |||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 906 ATGAAGGAGCGGAGGACCTAACTCCTGAAGACTACACTGACGATAATGATGATTACAATA 965 Query 860 GCATTTTGAGACCTGCGTTTGAAGTAGATGGAGAACCTGATTTTAGTACTGGACCACCAG 919 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 966 GCATTTTGAGACCTGCGTTTGAGGTAGATGGAGAACCTGATTTTAGTACTGGACCACCAG 1025 Query 920 AAGATGGGCTTGAATATTTAAGACGAGTCAGGTGGGAGGCTAAGGGAATTCCGAATGTAA 979 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1026 AAGATGGGCTCGAATATTTAAGACGAGTCAGGTGGGAGGCTAAGGGAATTCCGAATGTTA 1085 Query 980 GAGTAGCCAAGATAGATGAAAGCACGTACATAAAGAAAGAGCAAAGTGTTTATATGCCAC 1039 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1086 GAGTAGCCAAGATAGATGAAAGCAAGTACATAAAGAAAGAGCAAAGTGTTTATATGCCAC 1145 Query 1040 TAATTCCTGAAATCCCCAAATGTCCAGAGTACCTGTTACCCATGAAGGAATGGGAGGACT 1099 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 1146 TAATTCCTGAAATCCCCAAATGCCCAGAGTACCTCTTACCCATGAAGGAATGGGAGGACT 1205 Query 1100 CGTTGCTTTTGGACTTTGTACACCTTCGCCAGACTCTAACACAAAGTGCCAACAGCTGTG 1159 ||||||||| ||||| | |||||||||||||||||| | ||||||||||||||||||| Sbjct 1206 CGTTGCTTTCCGACTTCATTCACCTTCGCCAGACTCTATCGCAAAGTGCCAACAGCTGTG 1265 Query 1160 AGGATGAGATAATATCAAGTCAGTGTGTAGAAGATTTGCTTGTGGAGATGTTCAATAAGC 1219 ||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 1266 AGGATGAGATAGTATCAAGTCAGTGTGTAGAAGATTTACTTGTGGAGATATTCAATAAGC 1325 Query 1220 ATCTCCACACAGAGGAGGATGAGTCTTTTGGT-GAGGTGGTAACAGACATACAAGGAATG 1278 |||| ||||| ||| |||||||||| |||||| || |||||| ||||||||||||||||| Sbjct 1326 ATCTTCACACCGAGAAGGATGAGTCATTTGGTGGA-GTGGTATCAGACATACAAGGAATG 1384 Query 1279 GACTCGGTGACGCGGGTATCAAAGCTGAAAAAGCGTATATGTTTGGTTGAGAAGGAGAGC 1338 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1385 GACTCGGTGACGCGGGTGTCGAAGCTGAAAAAGCGTATATGTTTGGTTGAGAAGGAGATT 1444 Query 1339 GGTTTACAGAGTAGCGATTGCAAATGGGTAGTAGCGTTGTGTGCATCATTGGAGACTCCT 1398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1445 GGTTTACAGAGTAGCGATTGCAAATGGGTAGTAGCGTTGTGTGCATCATTGGAGACTCCT 1504 Query 1399 TTGGATGCCGATACTTGTGCTTGTCTAAGGGGTCTTCTGAGGAAGTGTGCTAGTGTTCGT 1458 |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 1505 TTGGATGCTGATACTTGTGCTTGTCTCAGGGGTCTTCTGAGGAAGTGTGCAAGTGTTCGT 1564 Query 1459 GCAGAGACATCATTAGAGGTTGGAGATGAAGAAGTTATCACCATGGCAAATATGCTCATC 1518 ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1565 GCAGAGAAATCATTAGAGGTTGGAGATGAAGAAGTTATCACCATGGCAAATATTCTCATC 1624 Query 1519 ACCATCGCCGGCAGATACTTTGGCCAAATGGGACAGTAATAAGTGAAGAAGAGAGTGGAC 1578 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||| Sbjct 1625 ACCATCGCCGGCAGATACTTTGGCCAAATGGGACAGTCATAAGTGACGAAGAGAGTCGAC 1684 Query 1579 ATGACATGCCCTTACTTTTCTCTCATATGTGCTTTTGAATCT-T-A-CATGAGCTTTAAT 1635 | | ||||| |||||||||||||||||||||||||||| | | | | ||||||||||||| Sbjct 1685 AGGTCATGCTCTTACTTTTCTCTCATATGTGCTTTTGAGTATATGAACATGAGCTTTAAT 1744 Query 1636 GCCATTTTTT 1645 |||||||||| Sbjct 1745 GCCATTTTTT 1754 Score = 344 bits (186), Expect = 1e-93 Identities = 324/387 (84%), Gaps = 24/387 (6%) Strand=Plus/Plus Query 182 ACAATAGGGATCTGCAAGAGATAAAGGAATCATCCTTCTCTAAAGGAAGTGAGCAATATC 241 ||||||||||||||||| ||||||| |||||||| |||| ||||| ||||||||||| | Sbjct 207 ACAATAGGGATCTGCAACAGATAAAAGAATCATCTTTCTTTAAAGAAAGTGAGCAATTTG 266 Query 242 GAGTTGATG--GAGCCCTTGA---AGAAAG-T-TTGA--ATTTTGA-GGAG-----AAGG 286 ||| ||||| | || | || || ||| | |||| || ||| |||| ||| Sbjct 267 GAGATGATGATGTGCACAAGATCGAGGAAGTTGTTGATGATACTGATGGAGCCCTTCAGG 326 Query 287 AACAAGAATCTGAAGCTCAGAGACTATTGGAAGCAGAGAAGAGAAGATTGCTGGCTGAAA 346 ||||||||||||| | ||||||||| |||||||||||||||||||||||| | ||||||| Sbjct 327 AACAAGAATCTGAGGTTCAGAGACTTTTGGAAGCAGAGAAGAGAAGATTGTTAGCTGAAA 386 Query 347 TCGAACTTGGGTCAATCTTTAGGAAGAGTGTTGATGTGGATACGTTGCCTAAGATCGAAG 406 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 387 TCGAACTTGGGTCAATCTTTAGGAAGAGGGTTGATGTGGATACGTTGCCTAAGATCGAAG 446 Query 407 AGACGATGGATAATGATGTTGATAAGATTGAA-T-TG--G-TTGATCATACTGCGTTGGT 461 |||| ||||||| | |||||||||||| || | || | ||||| ||||||||||||| Sbjct 447 AGACCATGGATAGTTATGTTGATAAGA--GATCTGTGAAGATTGATGATACTGCGTTGGT 504 Query 462 TGATGTTGTT-CATCATCCTAAGAGACCAGGGACTGCTCAAAATGAGAAGGATACACCTA 520 |||||||||| | ||||||||||||| |||| | ||| || ||||| |||||| ||| | Sbjct 505 TGATGTTGTTAC-TCATCCTAAGAGAACAGGAAGTGCACAGAATGATAAGGATGGACCAA 563 Query 521 GAAAGCTTAAGAAAATTGGAGATAAGA 547 |||||| ||||||| ||||||| |||| Sbjct 564 GAAAGCATAAGAAACTTGGAGAGAAGA 590 Score = 252 bits (136), Expect = 8e-66 Identities = 165/179 (92%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 3 CCGCCTCATGATGACAAACTCCGATTCCGACCACTGTACTCCGGCGAAAACCTCAATTTC 62 ||||||||||| ||| ||||| ||||||| |||||| | |||||| ||||||||| |||| Sbjct 1 CCGCCTCATGACGACGAACTCTGATTCCGGCCACTGCATTCCGGCAAAAACCTCAGTTTC 60 Query 63 TGGGGATGGATTAGAAAAAGAGAGCGACTTTAA-GAAGCAACTGAACTCTGAGATAGATC 121 | |||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||| Sbjct 61 TCGGGATGGATTTGAAAAAGAGAGCGAC-TTAACGAAGCAACTGAACTCTGAGATAGATC 119 Query 122 CACAAGCTTCTTCCTCGCAAAACGATGCAATAACTATGGAAGATGGAGCCGTCTCTGTA 180 ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 120 CACAAGCTTCTTCCTCGCAAACCGATGCGATAACTATGGAAGATGGAGCCGTCTCTGTA 178 > Ahg952207 jgi|Araly1|952207|scaffold_46000001.1 Length=548 Score = 340 bits (184), Expect = 2e-92 Identities = 251/284 (88%), Gaps = 2/284 (1%) Strand=Plus/Plus Query 833 ACACTGACGATAATGATGATTACAATAGCATTTTGAGACCTGCGTTTGAAGTAGATGGAG 892 ||||||| |||||||| |||||||||||||||||||| |||||||||| || ||||||| Sbjct 68 ACACTGAAGATAATGACGATTACAATAGCATTTTGAGGCCTGCGTTTGCCGTGGATGGAG 127 Query 893 AACCTGATTTTAG-TACTGGACCACCAGAAGATGGGCTTGAATATTTAAGACGAGTCAGG 951 ||||||| ||| | | |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 128 AACCTGA-TTTCGATTCTGGACCACCAGAAGATGGGATTGAATATTTAAGACGAGTCAGG 186 Query 952 TGGGAGGCTAAGGGAATTCCGAATGTAAGAGTAGCCAAGATAGATGAAAGCACGTACATA 1011 |||||||||||| ||||||| || |||| |||||||||| || ||| ||||| ||||| | Sbjct 187 TGGGAGGCTAAGCGAATTCCAAAAGTAAAAGTAGCCAAGGTAAATGGAAGCAAGTACAGA 246 Query 1012 AAGAAAGAGCAAAGTGTTTATATGCCACTAATTCCTGAAATCCCCAAATGTCCAGAGTAC 1071 ||||||||||||||||||| ||||||| |||| |||||||||||||||| |||||| || Sbjct 247 GAGAAAGAGCAAAGTGTTTACATGCCACAAATTTCTGAAATCCCCAAATGCCCAGAGCAC 306 Query 1072 CTGTTACCCATGAAGGAATGGGAGGACTCGTTGCTTTTGGACTT 1115 ||| | || |||||||||||||||| |||||||||| ||||| Sbjct 307 CTGCTGCCGGTGAAGGAATGGGAGGAGTCGTTGCTTTCCGACTT 350 Score = 226 bits (122), Expect = 5e-58 Identities = 146/158 (92%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 1267 ATACAAGGAATGGACTCGGTGACGCGGGTATCAAAGCTGAAAAAGCGTATATGTTTGGTT 1326 ||||||||||||||||| ||||||||||| |||||||||| |||||| |||||||||||| Sbjct 367 ATACAAGGAATGGACTCAGTGACGCGGGTCTCAAAGCTGAGAAAGCGGATATGTTTGGTT 426 Query 1327 GAGAAGGAGAGCGGTTTACAGAGTAGCGATTGCAAATGGGTAGTAGCGTTGTGTGCATCA 1386 |||||||||||||||||| ||||||| || ||||||||||||||||| || ||||||||| Sbjct 427 GAGAAGGAGAGCGGTTTAGAGAGTAGTGACTGCAAATGGGTAGTAGCATTATGTGCATCA 486 Query 1387 TTGGAGACTCCTTTGGATGCCGATACTTGTGCTTGTCT 1424 |||| |||||||||||||| ||||||||||||||||| Sbjct 487 GTGGACACTCCTTTGGATGCTGATACTTGTGCTTGTCT 524 > Ahg483344 jgi|Araly1|483344|fgenesh2_kg.4__2404__AT2G42510.1 Length=1848 Score = 320 bits (173), Expect = 2e-86 Identities = 248/283 (88%), Gaps = 9/283 (3%) Strand=Plus/Plus Query 1267 ATACAAGGAATGGACTCGGTGACGCGGGTATCAAAGCTGAAAAAGCGTATATGTTTGGTT 1326 ||||||||||||||||| ||||||||||| |||||||||| |||||| |||||||||||| Sbjct 1570 ATACAAGGAATGGACTCAGTGACGCGGGTCTCAAAGCTGAGAAAGCGGATATGTTTGGTT 1629 Query 1327 GAGAAGGAGAGCGGTTTACAGAGTAGCGATTGCAAATGGGTAGTAGCGTTGTGTGCATCA 1386 |||||||||||||||||| ||||||| || ||||||||||||||||| || ||||||||| Sbjct 1630 GAGAAGGAGAGCGGTTTAGAGAGTAGTGACTGCAAATGGGTAGTAGCATTATGTGCATCA 1689 Query 1387 TTGGAGACTCCTTTGGATGCCGATACTTGTGCTTGTCTAAGGGGTCTTCTGAGGAAGTGT 1446 |||| |||||||||||||| |||||| |||||||||| || | |||| |||| |||||| Sbjct 1690 GTGGACACTCCTTTGGATGCTGATACTAGTGCTTGTCTCAGAGCTCTTTTGAGAAAGTGT 1749 Query 1447 GCTAGTGTTCGTGCAGAGACATCATTAGAGGTTGGAGATGAAGAAGTTATCACCATGGCA 1506 || ||| ||||||| | | | |||||||| ||||||| ||||||||| ||||| Sbjct 1750 GCGAGTCTTCGTGC-G-----T--T-AGAGGTTGAAGATGAACAAGTTATCATTATGGCT 1800 Query 1507 AATATGCTCATCACCATCGCCGGCAGATACTTTGGCCAAATGG 1549 |||||||||||||||||||| |||||||||||||||||||||| Sbjct 1801 AATATGCTCATCACCATCGCAGGCAGATACTTTGGCCAAATGG 1843 Score = 291 bits (157), Expect = 2e-77 Identities = 252/296 (85%), Gaps = 14/296 (5%) Strand=Plus/Plus Query 833 ACACTGACGATAATGATGATTACAATAGCATTTTGAGACCTGCGTTTGAAGTAGATGGAG 892 ||||||| |||||||| |||||||||||||||||||| |||||||||| || ||||||| Sbjct 1193 ACACTGAAGATAATGACGATTACAATAGCATTTTGAGGCCTGCGTTTGCCGTGGATGGAG 1252 Query 893 AACCTGATTTTAG-TACTGGACCACCAGAAGATGGGCTTGAATATTTAAGACGA--GT-- 947 ||||||| ||| | | |||||||||||||||||||||||||||||||||||||| || Sbjct 1253 AACCTGA-TTTCGATTCTGGACCACCAGAAGATGGGCTTGAATATTTAAGACGATTGTTT 1311 Query 948 C-A-------GGTGGGAGGCTAAGGGAATTCCGAATGTAAGAGTAGCCAAGATAGATGAA 999 | | |||||||||||||| ||||||| || |||| |||||||||| || ||| | Sbjct 1312 CCACAATTTAGGTGGGAGGCTAAGCGAATTCCAAAAGTAAAAGTAGCCAAGGTAAATGGA 1371 Query 1000 AGCACGTACATAAAGAAAGAGCAAAGTGTTTATATGCCACTAATTCCTGAAATCCCCAAA 1059 |||| ||||| | ||||||||||||||||||| ||||||| |||| |||||||||||||| Sbjct 1372 AGCAAGTACAGAGAGAAAGAGCAAAGTGTTTACATGCCACAAATTTCTGAAATCCCCAAA 1431 Query 1060 TGTCCAGAGTACCTGTTACCCATGAAGGAATGGGAGGACTCGTTGCTTTTGGACTT 1115 || |||||| ||||| | || |||||||||||||||| |||||||||| ||||| Sbjct 1432 TGCCCAGAGCACCTGCTGCCGGTGAAGGAATGGGAGGAGTCGTTGCTTTCCGACTT 1487 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70581223985 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5