BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54380.1
Length=1879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474711 jgi|Araly1|474711|fgenesh2_kg.1__4665__AT1G54380.1 1631 0.0
Ahg952207 jgi|Araly1|952207|scaffold_46000001.1 340 2e-92
Ahg483344 jgi|Araly1|483344|fgenesh2_kg.4__2404__AT2G42510.1 320 2e-86
> Ahg474711 jgi|Araly1|474711|fgenesh2_kg.1__4665__AT1G54380.1
Length=1756
Score = 1631 bits (883), Expect = 0.0
Identities = 1023/1090 (94%), Gaps = 11/1090 (1%)
Strand=Plus/Plus
Query 566 GTGGAGTAGAAAACAATGGGAAGCAGTTTAGGAGATTGTACACTAGGAAACAATTGGAGT 625
|||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 666 GTGGAGGAGAAAACAATGGGAAGCAGTTTAGGAGAGTGTACACTAGGATCCAATTGGAGT 725
Query 626 CAATGAGGTTTGCCCACATTGTGAATCAGAAGAACCTGTGGAGTGAGATGTATTCTAGGA 685
|||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||
Sbjct 726 CAATGAGGTTTGCCCACACTGTGAATCAGAAGAAACTGTGGAGTGAGATGTATGCTAGGA 785
Query 686 TTCTACCTGAGGTGGTGACTGAGTATGAAAGTTTAGTTTATGTGAAGAATTACAAGAGTT 745
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 786 TTCTACCTGAGGTGGTGACTGAGTATGAAAGTTTAGTTTATCTGAAGAATTACAAGAATT 845
Query 746 CAAAGTCTAATCGTGTTCGTGGGCGAACGGAGAGTGGCAATGAAGAAAATTTGGGGACTG 805
||||||||||||| |||||||||| ||| |||||| ||| || |||||||||||| ||||
Sbjct 846 CAAAGTCTAATCGGGTTCGTGGGCAAACCGAGAGTTGCATTGGAGAAAATTTGGGTACTG 905
Query 806 AAGAAGGAACGGAGG-----AC-CCTGAAGACTACACTGACGATAATGATGATTACAATA 859
| |||||| |||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 906 ATGAAGGAGCGGAGGACCTAACTCCTGAAGACTACACTGACGATAATGATGATTACAATA 965
Query 860 GCATTTTGAGACCTGCGTTTGAAGTAGATGGAGAACCTGATTTTAGTACTGGACCACCAG 919
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 966 GCATTTTGAGACCTGCGTTTGAGGTAGATGGAGAACCTGATTTTAGTACTGGACCACCAG 1025
Query 920 AAGATGGGCTTGAATATTTAAGACGAGTCAGGTGGGAGGCTAAGGGAATTCCGAATGTAA 979
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1026 AAGATGGGCTCGAATATTTAAGACGAGTCAGGTGGGAGGCTAAGGGAATTCCGAATGTTA 1085
Query 980 GAGTAGCCAAGATAGATGAAAGCACGTACATAAAGAAAGAGCAAAGTGTTTATATGCCAC 1039
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1086 GAGTAGCCAAGATAGATGAAAGCAAGTACATAAAGAAAGAGCAAAGTGTTTATATGCCAC 1145
Query 1040 TAATTCCTGAAATCCCCAAATGTCCAGAGTACCTGTTACCCATGAAGGAATGGGAGGACT 1099
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1146 TAATTCCTGAAATCCCCAAATGCCCAGAGTACCTCTTACCCATGAAGGAATGGGAGGACT 1205
Query 1100 CGTTGCTTTTGGACTTTGTACACCTTCGCCAGACTCTAACACAAAGTGCCAACAGCTGTG 1159
||||||||| ||||| | |||||||||||||||||| | |||||||||||||||||||
Sbjct 1206 CGTTGCTTTCCGACTTCATTCACCTTCGCCAGACTCTATCGCAAAGTGCCAACAGCTGTG 1265
Query 1160 AGGATGAGATAATATCAAGTCAGTGTGTAGAAGATTTGCTTGTGGAGATGTTCAATAAGC 1219
||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1266 AGGATGAGATAGTATCAAGTCAGTGTGTAGAAGATTTACTTGTGGAGATATTCAATAAGC 1325
Query 1220 ATCTCCACACAGAGGAGGATGAGTCTTTTGGT-GAGGTGGTAACAGACATACAAGGAATG 1278
|||| ||||| ||| |||||||||| |||||| || |||||| |||||||||||||||||
Sbjct 1326 ATCTTCACACCGAGAAGGATGAGTCATTTGGTGGA-GTGGTATCAGACATACAAGGAATG 1384
Query 1279 GACTCGGTGACGCGGGTATCAAAGCTGAAAAAGCGTATATGTTTGGTTGAGAAGGAGAGC 1338
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1385 GACTCGGTGACGCGGGTGTCGAAGCTGAAAAAGCGTATATGTTTGGTTGAGAAGGAGATT 1444
Query 1339 GGTTTACAGAGTAGCGATTGCAAATGGGTAGTAGCGTTGTGTGCATCATTGGAGACTCCT 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 GGTTTACAGAGTAGCGATTGCAAATGGGTAGTAGCGTTGTGTGCATCATTGGAGACTCCT 1504
Query 1399 TTGGATGCCGATACTTGTGCTTGTCTAAGGGGTCTTCTGAGGAAGTGTGCTAGTGTTCGT 1458
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1505 TTGGATGCTGATACTTGTGCTTGTCTCAGGGGTCTTCTGAGGAAGTGTGCAAGTGTTCGT 1564
Query 1459 GCAGAGACATCATTAGAGGTTGGAGATGAAGAAGTTATCACCATGGCAAATATGCTCATC 1518
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1565 GCAGAGAAATCATTAGAGGTTGGAGATGAAGAAGTTATCACCATGGCAAATATTCTCATC 1624
Query 1519 ACCATCGCCGGCAGATACTTTGGCCAAATGGGACAGTAATAAGTGAAGAAGAGAGTGGAC 1578
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct 1625 ACCATCGCCGGCAGATACTTTGGCCAAATGGGACAGTCATAAGTGACGAAGAGAGTCGAC 1684
Query 1579 ATGACATGCCCTTACTTTTCTCTCATATGTGCTTTTGAATCT-T-A-CATGAGCTTTAAT 1635
| | ||||| |||||||||||||||||||||||||||| | | | | |||||||||||||
Sbjct 1685 AGGTCATGCTCTTACTTTTCTCTCATATGTGCTTTTGAGTATATGAACATGAGCTTTAAT 1744
Query 1636 GCCATTTTTT 1645
||||||||||
Sbjct 1745 GCCATTTTTT 1754
Score = 344 bits (186), Expect = 1e-93
Identities = 324/387 (84%), Gaps = 24/387 (6%)
Strand=Plus/Plus
Query 182 ACAATAGGGATCTGCAAGAGATAAAGGAATCATCCTTCTCTAAAGGAAGTGAGCAATATC 241
||||||||||||||||| ||||||| |||||||| |||| ||||| ||||||||||| |
Sbjct 207 ACAATAGGGATCTGCAACAGATAAAAGAATCATCTTTCTTTAAAGAAAGTGAGCAATTTG 266
Query 242 GAGTTGATG--GAGCCCTTGA---AGAAAG-T-TTGA--ATTTTGA-GGAG-----AAGG 286
||| ||||| | || | || || ||| | |||| || ||| |||| |||
Sbjct 267 GAGATGATGATGTGCACAAGATCGAGGAAGTTGTTGATGATACTGATGGAGCCCTTCAGG 326
Query 287 AACAAGAATCTGAAGCTCAGAGACTATTGGAAGCAGAGAAGAGAAGATTGCTGGCTGAAA 346
||||||||||||| | ||||||||| |||||||||||||||||||||||| | |||||||
Sbjct 327 AACAAGAATCTGAGGTTCAGAGACTTTTGGAAGCAGAGAAGAGAAGATTGTTAGCTGAAA 386
Query 347 TCGAACTTGGGTCAATCTTTAGGAAGAGTGTTGATGTGGATACGTTGCCTAAGATCGAAG 406
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 387 TCGAACTTGGGTCAATCTTTAGGAAGAGGGTTGATGTGGATACGTTGCCTAAGATCGAAG 446
Query 407 AGACGATGGATAATGATGTTGATAAGATTGAA-T-TG--G-TTGATCATACTGCGTTGGT 461
|||| ||||||| | |||||||||||| || | || | ||||| |||||||||||||
Sbjct 447 AGACCATGGATAGTTATGTTGATAAGA--GATCTGTGAAGATTGATGATACTGCGTTGGT 504
Query 462 TGATGTTGTT-CATCATCCTAAGAGACCAGGGACTGCTCAAAATGAGAAGGATACACCTA 520
|||||||||| | ||||||||||||| |||| | ||| || ||||| |||||| ||| |
Sbjct 505 TGATGTTGTTAC-TCATCCTAAGAGAACAGGAAGTGCACAGAATGATAAGGATGGACCAA 563
Query 521 GAAAGCTTAAGAAAATTGGAGATAAGA 547
|||||| ||||||| ||||||| ||||
Sbjct 564 GAAAGCATAAGAAACTTGGAGAGAAGA 590
Score = 252 bits (136), Expect = 8e-66
Identities = 165/179 (92%), Gaps = 2/179 (1%)
Strand=Plus/Plus
Query 3 CCGCCTCATGATGACAAACTCCGATTCCGACCACTGTACTCCGGCGAAAACCTCAATTTC 62
||||||||||| ||| ||||| ||||||| |||||| | |||||| ||||||||| ||||
Sbjct 1 CCGCCTCATGACGACGAACTCTGATTCCGGCCACTGCATTCCGGCAAAAACCTCAGTTTC 60
Query 63 TGGGGATGGATTAGAAAAAGAGAGCGACTTTAA-GAAGCAACTGAACTCTGAGATAGATC 121
| |||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 61 TCGGGATGGATTTGAAAAAGAGAGCGAC-TTAACGAAGCAACTGAACTCTGAGATAGATC 119
Query 122 CACAAGCTTCTTCCTCGCAAAACGATGCAATAACTATGGAAGATGGAGCCGTCTCTGTA 180
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 120 CACAAGCTTCTTCCTCGCAAACCGATGCGATAACTATGGAAGATGGAGCCGTCTCTGTA 178
> Ahg952207 jgi|Araly1|952207|scaffold_46000001.1
Length=548
Score = 340 bits (184), Expect = 2e-92
Identities = 251/284 (88%), Gaps = 2/284 (1%)
Strand=Plus/Plus
Query 833 ACACTGACGATAATGATGATTACAATAGCATTTTGAGACCTGCGTTTGAAGTAGATGGAG 892
||||||| |||||||| |||||||||||||||||||| |||||||||| || |||||||
Sbjct 68 ACACTGAAGATAATGACGATTACAATAGCATTTTGAGGCCTGCGTTTGCCGTGGATGGAG 127
Query 893 AACCTGATTTTAG-TACTGGACCACCAGAAGATGGGCTTGAATATTTAAGACGAGTCAGG 951
||||||| ||| | | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 128 AACCTGA-TTTCGATTCTGGACCACCAGAAGATGGGATTGAATATTTAAGACGAGTCAGG 186
Query 952 TGGGAGGCTAAGGGAATTCCGAATGTAAGAGTAGCCAAGATAGATGAAAGCACGTACATA 1011
|||||||||||| ||||||| || |||| |||||||||| || ||| ||||| ||||| |
Sbjct 187 TGGGAGGCTAAGCGAATTCCAAAAGTAAAAGTAGCCAAGGTAAATGGAAGCAAGTACAGA 246
Query 1012 AAGAAAGAGCAAAGTGTTTATATGCCACTAATTCCTGAAATCCCCAAATGTCCAGAGTAC 1071
||||||||||||||||||| ||||||| |||| |||||||||||||||| |||||| ||
Sbjct 247 GAGAAAGAGCAAAGTGTTTACATGCCACAAATTTCTGAAATCCCCAAATGCCCAGAGCAC 306
Query 1072 CTGTTACCCATGAAGGAATGGGAGGACTCGTTGCTTTTGGACTT 1115
||| | || |||||||||||||||| |||||||||| |||||
Sbjct 307 CTGCTGCCGGTGAAGGAATGGGAGGAGTCGTTGCTTTCCGACTT 350
Score = 226 bits (122), Expect = 5e-58
Identities = 146/158 (92%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 1267 ATACAAGGAATGGACTCGGTGACGCGGGTATCAAAGCTGAAAAAGCGTATATGTTTGGTT 1326
||||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||||
Sbjct 367 ATACAAGGAATGGACTCAGTGACGCGGGTCTCAAAGCTGAGAAAGCGGATATGTTTGGTT 426
Query 1327 GAGAAGGAGAGCGGTTTACAGAGTAGCGATTGCAAATGGGTAGTAGCGTTGTGTGCATCA 1386
|||||||||||||||||| ||||||| || ||||||||||||||||| || |||||||||
Sbjct 427 GAGAAGGAGAGCGGTTTAGAGAGTAGTGACTGCAAATGGGTAGTAGCATTATGTGCATCA 486
Query 1387 TTGGAGACTCCTTTGGATGCCGATACTTGTGCTTGTCT 1424
|||| |||||||||||||| |||||||||||||||||
Sbjct 487 GTGGACACTCCTTTGGATGCTGATACTTGTGCTTGTCT 524
> Ahg483344 jgi|Araly1|483344|fgenesh2_kg.4__2404__AT2G42510.1
Length=1848
Score = 320 bits (173), Expect = 2e-86
Identities = 248/283 (88%), Gaps = 9/283 (3%)
Strand=Plus/Plus
Query 1267 ATACAAGGAATGGACTCGGTGACGCGGGTATCAAAGCTGAAAAAGCGTATATGTTTGGTT 1326
||||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||||
Sbjct 1570 ATACAAGGAATGGACTCAGTGACGCGGGTCTCAAAGCTGAGAAAGCGGATATGTTTGGTT 1629
Query 1327 GAGAAGGAGAGCGGTTTACAGAGTAGCGATTGCAAATGGGTAGTAGCGTTGTGTGCATCA 1386
|||||||||||||||||| ||||||| || ||||||||||||||||| || |||||||||
Sbjct 1630 GAGAAGGAGAGCGGTTTAGAGAGTAGTGACTGCAAATGGGTAGTAGCATTATGTGCATCA 1689
Query 1387 TTGGAGACTCCTTTGGATGCCGATACTTGTGCTTGTCTAAGGGGTCTTCTGAGGAAGTGT 1446
|||| |||||||||||||| |||||| |||||||||| || | |||| |||| ||||||
Sbjct 1690 GTGGACACTCCTTTGGATGCTGATACTAGTGCTTGTCTCAGAGCTCTTTTGAGAAAGTGT 1749
Query 1447 GCTAGTGTTCGTGCAGAGACATCATTAGAGGTTGGAGATGAAGAAGTTATCACCATGGCA 1506
|| ||| ||||||| | | | |||||||| ||||||| ||||||||| |||||
Sbjct 1750 GCGAGTCTTCGTGC-G-----T--T-AGAGGTTGAAGATGAACAAGTTATCATTATGGCT 1800
Query 1507 AATATGCTCATCACCATCGCCGGCAGATACTTTGGCCAAATGG 1549
|||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1801 AATATGCTCATCACCATCGCAGGCAGATACTTTGGCCAAATGG 1843
Score = 291 bits (157), Expect = 2e-77
Identities = 252/296 (85%), Gaps = 14/296 (5%)
Strand=Plus/Plus
Query 833 ACACTGACGATAATGATGATTACAATAGCATTTTGAGACCTGCGTTTGAAGTAGATGGAG 892
||||||| |||||||| |||||||||||||||||||| |||||||||| || |||||||
Sbjct 1193 ACACTGAAGATAATGACGATTACAATAGCATTTTGAGGCCTGCGTTTGCCGTGGATGGAG 1252
Query 893 AACCTGATTTTAG-TACTGGACCACCAGAAGATGGGCTTGAATATTTAAGACGA--GT-- 947
||||||| ||| | | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1253 AACCTGA-TTTCGATTCTGGACCACCAGAAGATGGGCTTGAATATTTAAGACGATTGTTT 1311
Query 948 C-A-------GGTGGGAGGCTAAGGGAATTCCGAATGTAAGAGTAGCCAAGATAGATGAA 999
| | |||||||||||||| ||||||| || |||| |||||||||| || ||| |
Sbjct 1312 CCACAATTTAGGTGGGAGGCTAAGCGAATTCCAAAAGTAAAAGTAGCCAAGGTAAATGGA 1371
Query 1000 AGCACGTACATAAAGAAAGAGCAAAGTGTTTATATGCCACTAATTCCTGAAATCCCCAAA 1059
|||| ||||| | ||||||||||||||||||| ||||||| |||| ||||||||||||||
Sbjct 1372 AGCAAGTACAGAGAGAAAGAGCAAAGTGTTTACATGCCACAAATTTCTGAAATCCCCAAA 1431
Query 1060 TGTCCAGAGTACCTGTTACCCATGAAGGAATGGGAGGACTCGTTGCTTTTGGACTT 1115
|| |||||| ||||| | || |||||||||||||||| |||||||||| |||||
Sbjct 1432 TGCCCAGAGCACCTGCTGCCGGTGAAGGAATGGGAGGAGTCGTTGCTTTCCGACTT 1487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581223985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5