BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54385.1
Length=2014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474709 jgi|Araly1|474709|fgenesh2_kg.1__4663__AT1G54385.2 1740 0.0
> Ahg474709 jgi|Araly1|474709|fgenesh2_kg.1__4663__AT1G54385.2
Length=1991
Score = 1740 bits (942), Expect = 0.0
Identities = 1179/1288 (92%), Gaps = 38/1288 (3%)
Strand=Plus/Plus
Query 696 GGTTTGTCAAAATGTGGTAGTTGCGTTGGACTCAAACTCCAACCAAACACATCTTCAAAT 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 GGTTTGTCAAAATGTGGTAGTTGCGTTGGACTCAAACTCCAACCAAACACATCTTCAAAT 770
Query 756 GGGTTTGGTTATGTCACTTGCCAAGCATAATCCTTTGATTGTTGAAGCTTATGCAAGGTT 815
|||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 771 GGGTCTGGTTATGTCACTTGCCAAACATAATCCTTTGATTGTTGAAGCCTATGCAAGGTT 830
Query 816 GCTGATACACACGGGGTTGCGAATTCTAGGATTTGGAGTATCTGAAGGAAACTCGCAGAA 875
| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 831 GTTGATACACACGGGATTGCGAATTCTGGGATTCGGAGTATCTGAAGGAAACTCGCAGAA 890
Query 876 ACGATTATCAGCAGTCCAAATGTTGAACTTCCTTATGAAGTGCTTGGATCCGAGAAGCAT 935
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 891 ACGGTTATCAGCAGTCCAAATGTTGAACTTCCTAATGAAGTGCTTGGACCCGAGAAGCAT 950
Query 936 ATACTCGGAAGTTGAGTTGATAATAAAAGAAATGGAGAGGTGTCAATCTGACCAAATGGC 995
|||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 951 ATACTCCGAAGTTGAGTTAATAATCAAAGAAATGGAGAGGTGTCAATCTGATCAAATGGC 1010
Query 996 TTATGTTAGAGGAGCTGCTTATGAAGCAATGATGACTTCAAAAAGAATAGCGGCAGAGCT 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1011 TTATGTTAGAGGAGCTGCTTATGAAGCAATGATGACTTCAAAAAGAATAGCGGGAGAGCT 1070
Query 1056 CGAGTCGAAGATGGAGAAAGGTTGTCGTTCTGTTACTGGTTCGAATTTCAGTCGAAGAAA 1115
|||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1071 CGAGTCGAAGCTGGAGAAGGGTTGTCGTTCTGTTACTGGTTCGAATTACAGTCGAAGAAA 1130
Query 1116 CTGTTC-GTCCA----T--T-G-----TTCCTGATTACTCCTTATCACCTGAATCACAGA 1162
|||||| | ||| | | | |||||||| || |||||||||||||||||||||
Sbjct 1131 CTGTTCAG-CCATTGTTAATGGTCATTTTCCTGATGACCCCTTATCACCTGAATCACAGA 1189
Query 1163 CTCTAGGCTCTTTTAGCGGGTATGATTCTCCGGTTGAGTCCTCGCCTATTTCTCATACTT 1222
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 CTCTAGGCTCGTTCAGCGGATATGATTCTCCGGTTGAGTCCTCGCCTATTTCTCATACTT 1249
Query 1223 CTTGTAACTCTGAATTTGATCGGAGGAGTGTGAACCGCAAACTTTGGAGACGTGATGAGA 1282
||||||||||||||||||||||| |||||||||| |||||||||||||||| |||| | |
Sbjct 1250 CTTGTAACTCTGAATTTGATCGGCGGAGTGTGAATCGCAAACTTTGGAGACCTGATCAAA 1309
Query 1283 ATGGAGGAGTGGTTGATATCTCTTTAAAGGATGGTCTTTTCTCCCGTGTAACTAAAGGAA 1342
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1310 ATGGAGGAGGGGTTGATATCTCTTTAAAGGATGGTCTTTTCTCCGGTGTAACTAAAGGAA 1369
Query 1343 GCACCACTGTCTCTGATTCACCTCTTGTACCGTATGATACTTGTGAAAATGGAGATGAAT 1402
||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 1370 ACACCACTGTCTCTGATTCACCTCTTGTCCCCTATGACACTTGTGAAAATGGAGATGAAT 1429
Query 1403 TTGAAGGGTTTCTAATGGAAAGTTT--G----A-------G--AAACACCACTCCTAGTC 1447
| ||||| ||||| ||||||||||| | | | |||||||||||||||||
Sbjct 1430 TCGAAGGTTTTCTGATGGAAAGTTTGAGAAACAGGCGGCTGCAAAACACCACTCCTAGTC 1489
Query 1448 CTCAGAGACAGCGTTCACGTCGCATCAATGCTGAAGATTTCAACATCTTCAGCACTCCAC 1507
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1490 CTCAGAGACAGCGTTCACGACGTATCAATGCTGAAGATTTCAACATCTTCAGCACTCCAC 1549
Query 1508 GGAAGCTAATCAGCTCTCTTCAATATCCTGATGATGTTGATTTAGATCATTCAGACATCC 1567
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1550 GGAAGCTTATCAGCTCTCTTCAATATCCTGATGATGTTGACTTAGACCATTCAGATATCC 1609
Query 1568 AAAGTCCAATACTGAGAGGCGAGA-GAGAGAAAACCATAGGATCTCGCAAGAATCCTAAA 1626
|||||||||||| |||| ||| || |||||||||||||||||||||||||||||||| ||
Sbjct 1610 AAAGTCCAATACCGAGAAGCG-GAAGAGAGAAAACCATAGGATCTCGCAAGAATCCTCAA 1668
Query 1627 CTCAGAAAGCAATTTCCAACCATGGTGGAAACAATGTCATCAACTATCACAGTTAGTGAA 1686
||||||||||||||| ||||||||| ||||||||||||||||||| ||| | |||||| |
Sbjct 1669 CTCAGAAAGCAATTTTCAACCATGGCGGAAACAATGTCATCAACTGTCAAATTTAGTGGA 1728
Query 1687 GACACAGCTCAAACACAGATGATAACCGGTaagaagaagaagaagaagaTGAGCTATGCC 1746
| ||| ||||||||||||||||| | ||||||||||||||||||| |||||||||||
Sbjct 1729 TATACATCTCAAACACAGATGATATCGGGTAAGAAGAAGAAGAAGA---TGAGCTATGCC 1785
Query 1747 AAACTCGTTATTGCGATATCTTTTGTTGTGGTGGCTCTCTTCGCAACTGTGATATTGATG 1806
||| |||| ||||||||||| ||||||| | |||||||||| |||| ||||||||||||
Sbjct 1786 AAATTCGTGATTGCGATATCATTTGTTGCGATGGCTCTCTTTACAACCGTGATATTGATG 1845
Query 1807 GTGAATCAAGATGATGATGTTGGTTACTACACTGTCCCTACATGATTCACCTCTTATT-G 1865
|||||||||||||| |||||||||||||||||||| |||||||||||||| ||| ||| |
Sbjct 1846 GTGAATCAAGATGACGATGTTGGTTACTACACTGTTCCTACATGATTCACATCT-ATTTG 1904
Query 1866 GTGTTAAGTTTAATCGTAGTGTAGCAGAGAGAGTAGTTTAGCTATTTAATTACGTGTTAG 1925
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1905 GTGTTAAGTTCAATCGTAGTGTAGCAGAGAGAGTAGTTTAGCTGTTTAATTACGTGTTAG 1964
Query 1926 TTGTTTGTAATGAACTT-GATACAAGAT 1952
|||| |||||||||||| | ||||||||
Sbjct 1965 TTGTCTGTAATGAACTTCG-TACAAGAT 1991
Score = 861 bits (466), Expect = 0.0
Identities = 528/556 (95%), Gaps = 11/556 (2%)
Strand=Plus/Plus
Query 101 GTTTCATCTTTGTACGGTCAAACCAAATAATTAGCTGAGAGCTCCCAGTATAAGAAGCAG 160
|||||||||||||||||||||| |||| | || | |||| | |||| ||||||||
Sbjct 163 GTTTCATCTTTGTACGGTCAAAGCAAA-GA--AG-T---AGCT-CAAGTAGAAGAAGCA- 213
Query 161 GTT-GAGTAATGGGTTTGAATCTGAATCCAATATTGAGACAAGAACTGGCTAATCTTGAC 219
||| |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||
Sbjct 214 GTTGGAGTAATGGGTTTGAATCTGAATCCAATTTTGCGACAAGAGTTGGCTAATCTTGAC 273
Query 220 AAAGACACAGAGAGTCGTAAATCAGCAATGAAAGCTCTTAAATCTTATGTGAAGGACTTG 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 AAAGACACAGAGAGTCGTAAATCAGCAATGAAAGCTCTTAAATCTTATGTGAAGGACTTG 333
Query 280 GATTCAAAGGCTATTCCTGGTTTTCTAGCTCAAGTTTTCGAGACTAAAGAAACCAACTCT 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 GATTCAAAGGCTATTCCTGGTTTTCTAGCTCAAGTTTTCGAGACTAAAGAAACCAACTCT 393
Query 340 TTGTCCGGTGAATACACGATTTCGCTTTATGAAATCCTTGCTCGTGTTCATGGACCTAAC 399
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 394 TTGTCCGGTGAATACACGATTTCGCTTTATGAAATACTTGCTCGTGTTCATGGACCTAAC 453
Query 400 ATTGTGCCTCAGATTGATACAATCATGTCCACTATTGTCAAGACTTTGGCTTCTAGTGCT 459
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 454 ATTGTTCCTCAGATTGATACAATCATGTCCACTATTGTCAAGACTTTGGCTTCAAGTGCT 513
Query 460 GGTTCTTTCCCTCTTCAACAAGCGTGTTCGAAAGTTATTCCGGCGATTGCTCGATATGGG 519
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 514 GGTTCTTTCCCTCTTCAACAAGCTTGTTCGAAAGTTATTCCGGCAATTGCTCGATATGGG 573
Query 520 ATCGATCCGACTACTACAGAAGACAAGAAACGAGTTATAATCCACTCTTTGTGTAAGCC- 578
||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 574 ATCGATCCGACAACTAAAGACGACAAGAAACGAGTTATAATCCACTCTTTGTGTAAGCCA 633
Query 579 TCTTACGGATTCTCTATTGGCCTCTCAAGAGAGCCTTACTTCAGGGGCTGCTTTGTGTTT 638
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 TCTTACGGATTCTCTACTGGCCTCTCAAGAGAGCCTTACTTCAGGGGCTGCTTTGTGTTT 693
Query 639 GAAGGCTCTTGTGGAT 654
||||||||||||||||
Sbjct 694 GAAGGCTCTTGTGGAT 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75723407060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5