BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54390.2
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474706 jgi|Araly1|474706|fgenesh2_kg.1__4660__AT1G54390.2 1221 0.0
> Ahg474706 jgi|Araly1|474706|fgenesh2_kg.1__4660__AT1G54390.2
Length=1235
Score = 1221 bits (661), Expect = 0.0
Identities = 721/750 (96%), Gaps = 4/750 (1%)
Strand=Plus/Plus
Query 17 CCCAATTCGAAATCCTAG-CTGAAGTCT-ATGCTCCATAATCAAATCCAGTTCATCAGAG 74
|||||||| ||| ||||| || || || | |||||||||||||||||| || |||||||
Sbjct 1 CCCAATTCAAAACCCTAGCCT-TAGCCTGA-GCTCCATAATCAAATCCAATTTATCAGAG 58
Query 75 ATCAAAGATGGCTATTGCACGAACTGGAGTTTATGTTGATGATTACCTTGAGTATGCAAG 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 ATCAAAGATGGCTATTGCACGAACTGGAGTTTATGTTGATGATTACCTTGAGTATGCAAG 118
Query 135 CACTTTCCCTGCAGAGCTACAAAGATTACTAAACACAGTTCGCGAACTAGACGAGAGATC 194
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 119 CACTTTCCCTGCAGAGCTACAAAGACTACTAAACACAGTTCGCGAGCTAGACGAGAGATC 178
Query 195 TCAATCGCTTATAAATCAGACAAGACAGCAAACTAAGTATTGCTTAGGGCTTGCTTCACA 254
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 179 TCAATCGCTTATAAATCAGACAAGGCAGCAAACTAAGTATTGCTTAGGGCTTGCTTCACA 238
Query 255 GAGTTCTAAAAAGGGTAATGGTAATCATTACAATAATGGTGGTCTTGATGAAGAGGAAAC 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GAGTTCTAAAAAGGGTAATGGTAATCATTACAATAATGGTGGTCTTGATGAAGAGGAAAC 298
Query 315 GATTGAGAAAATGCGTAAAGAGATTGAGTCTAGTCAGGAAAATGCGTTAAGTTTGTGTAC 374
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 299 GATTGAGAAAATGCGTAAAGAGATCGAGTCTAGTCAGGAAAATGCGTTAAGTTTGTGTAC 358
Query 375 CGAGAAGGTTTTATTGGCCCGACAAGCGTATGATCTTATAGATAGTCATGTAAAACGACT 434
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGAGAAGGTCTTATTGGCCCGACAAGCGTATGATCTTATAGATAGTCATGTAAAACGACT 418
Query 435 TGATGAAGATCTGAATAATTTTGCAGAAGATTTAAAGCAAGAGGGAAAAATTCCACCAGA 494
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 419 TGATGAAGATCTGAATAATTTTGCAGAAGATTTAAAGCAAGAGGGAAAAATACCACAAGA 478
Query 495 CGAGCCCTCTGTTCTTCCTCCACTACCTATAGTTCCTAAAGCGGAAAAGCGTAAGTCCTT 554
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 479 CGAGCCCTCCGTTCTTCCTCCACTACCTATAGTTCCTAAACCGGAAAAGCGTAAGTCCTT 538
Query 555 CTATGGCACACCTCAGCCCAAGAAGATTGATTATAGAGATAGAGACTGGGATCGTGACAG 614
|||||||||||||||| |||||||||||||||| |||||||| || ||||||||||| ||
Sbjct 539 CTATGGCACACCTCAGTCCAAGAAGATTGATTACAGAGATAGGGAGTGGGATCGTGATAG 598
Query 615 GGATTTTGAGCTCATGCCTCCTCCAGGAAGCAATCGGAAAGACCTTATGCCAATTGAAGA 674
||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 599 AGATTTTGAGCTCATGCCTCCTCCAGGAAGCAATCGGAAAGATCTCATGCCAATCGAAGA 658
Query 675 GCAGCCAATCGATCCAAACGAACCAACTTACTGTGTCTGCCATCAGGTGTCCTTTGGAGA 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GCAGCCAATCGATCCAAACGAACCAACTTACTGTGTCTGCCATCAGGTGTCCTTTGGAGA 718
Query 735 CATGATTGCCTGTGACAATGAGAATGTGAG 764
||||||||||||||||||||||||||||||
Sbjct 719 CATGATTGCCTGTGACAATGAGAATGTGAG 748
Score = 627 bits (339), Expect = 8e-179
Identities = 430/472 (91%), Gaps = 13/472 (3%)
Strand=Plus/Plus
Query 828 TTCCTGTTTCGACAGTGCCAAGGAGGTGAATGGTTTCACTATACATGCGTTGGCCTCACA 887
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TTCCTGTTTGGACAGTGCCAAGGAGGTGAATGGTTTCACTATACATGCGTTGGCCTCACA 835
Query 888 CCTGAGACCAGATTCAAAGGGAAATGGTACTGCCCCACCTGCAGACTCCTCCCACAGTCA 947
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 836 CCTGAGACCAGATTCAAAGGGAAATGGTATTGCCCCACCTGCAGGCTCCTCCCACAGTCA 895
Query 948 CACTAATATCATTTGTACCTGTGAGAAGGTGCCACTGGCATCTTCTTTGGCACCTTCCCT 1007
|| |||||||||| ||||||| ||||||||| |||||||||| |||||||||| ||
Sbjct 896 CATTAATATCATTC---CCTGTGACAAGGTGCCAATGGCATCTTCCTTGGCACCTTTGCT 952
Query 1008 TCATGACCAATGCCACCAAACTCATCTTTCTTGTTACCCAACATCTAGCAAGTGCAAGTA 1067
||||||||| || |||||| ||||||||||||| ||| || |||||||||||||||||||
Sbjct 953 TCATGACCAGTGTCACCAATCTCATCTTTCTTGCTACGCATCATCTAGCAAGTGCAAGTA 1012
Query 1068 GAAGCAAACTTTAGATGGAGAAATCATCATGTTTTGTA-AACCTCGGGTTAATTCGTGGA 1126
||||||||||||||||||||||| |||||||||||||| ||| |||||||||||| ||||
Sbjct 1013 GAAGCAAACTTTAGATGGAGAAAACATCATGTTTTGTACAAC-TCGGGTTAATTCTTGGA 1071
Query 1127 GCATATATTTTGTATATCAATTGTATTTGGGTATTGGTGGGCATTTTCCGTTTTATTCTA 1186
| |||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||
Sbjct 1072 TCTTATATTTTGTATATCAATTGTAGTTGGGTGTTGGTGGGTATTTTCCGTTTTATTCTA 1131
Query 1187 CTAGTATCGATATTTACATCTGCTTCTTTCTTTCTTTTTTCCCCTCAAACCATGAGCCTT 1246
|||||| |||||||| ||||||||||| |||| || ||| ||||||||||||| ||
Sbjct 1132 CTAGTACCGATATTTTCATCTGCTTCT--CTTT-TT----CCC-TCAAACCATGAGCATT 1183
Query 1247 TGTATTGATCAAATGACATGTACAAAGGTTTTGTTCATCAGAAGGAATTTCA 1298
||||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct 1184 TGTATTGATCAAATGACATGTACAAAGTTTTTGTTCATCACAAGGGATTTCA 1235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49292931681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5