BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54400.1
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337726 jgi|Araly1|337726|fgenesh1_pg.C_scaffold_1004291 815 0.0
> Ahg337726 jgi|Araly1|337726|fgenesh1_pg.C_scaffold_1004291
Length=552
Score = 815 bits (441), Expect = 0.0
Identities = 520/557 (93%), Gaps = 10/557 (2%)
Strand=Plus/Plus
Query 1 ATGGCAGTAAATATGGAAGGTTCACAGACACACTTTTACGATGAAATCGAACCCTTTTGT 60
||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGTAAATATGGAAGGTGGAAACACACACTTTTACGATGAAATCGAACCCTTTTGT 60
Query 61 CGATGGAGAAGAACGGAAGACATCGACATTCTTGAGCTACATCTTCCTTCAGGTTTGAAG 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGATGGAGAAGAATGGAAGACATCGACATTCTTGAGCTACATCTTCCTTCAGGTTTGAAG 120
Query 121 AAAGAGCATCTTAAAATACAGATCAACAACAGTGGTGTACTAACAATAACAGGAGGCTGT 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 AAAGAGCATCTTAAAATACAGATCAACCACAGTGGTGTACTAACAATAACAGGAGGCTGT 180
Query 181 CCA-GTGGACCAAACCAAAACAATCAGGTTCATGAAAGAAACAAAAGTTGC-AAAAGATT 238
| | |||||||| |||||| ||||||||||||||||||||||||||||||| |||| |||
Sbjct 181 C-ATGTGGACCAGACCAAATCAATCAGGTTCATGAAAGAAACAAAAGTTGCGAAAA-ATT 238
Query 239 GTAAAAGAAATGAGATTCGTGCAAAGTTCTCTAAGGGAGTTTTGTATGTGACGATGCCAA 298
||||||||||||||||||| || |||||||| |||||||||||||||||||| |||||||
Sbjct 239 GTAAAAGAAATGAGATTCGCGCGAAGTTCTCAAAGGGAGTTTTGTATGTGACAATGCCAA 298
Query 299 AGACAATCCCTATAGCAGCTGGTCTCTCAGTTTCTTTGAAGGGAGCCACGCCACAA-CAT 357
|||||| ||||||| ||||||||| ||| || |||||||||||||||| ||||| | |
Sbjct 299 AGACAAGCCCTATAACAGCTGGTCCCTCGGTCGCTTTGAAGGGAGCCACATCACAAAC-T 357
Query 358 CAA-ACCCCTAAAACAGATGAGGGTATGAGAAATGTTGCAAACTGTTCAAGCGAATTTTA 416
| | |||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||
Sbjct 358 CGAGACCC-TAAAACAGATGAGGATATGAGAAATGTAGCAAACTGTTCAAGTGAATTTTA 416
Query 417 TAGT-AAGTTTGGCTCATTGAAGCAAAGACTATGGAGGAAGACAGTAGTTGAGGGTGTGG 475
|| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 417 TA-TCAAGTTTGGCTCATTGAAGCAAAGACTATGGAGGAAGACAGTAGTGGAGGGTGTGG 475
Query 476 CCGCTGTGGTGGTTGTGGCTGCTGCAGTTTTAGGAGTTGTTAAAGCGTACCAATATTTTA 535
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 476 CCGCTGTGGTGGTTGTGGCTGCTGCAGTTTTAGGTGTGGTTAAAGCGTACCAATATTTTA 535
Query 536 TGGCATCACCTGTGTGA 552
|||||||||||||||||
Sbjct 536 TGGCATCACCTGTGTGA 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20146150992
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5