BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G54410.1

Length=728
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474716 jgi|Araly1|474716|fgenesh2_kg.1__4670__AT1G54410.1         865    0.0  


> Ahg474716 jgi|Araly1|474716|fgenesh2_kg.1__4670__AT1G54410.1
Length=620

 Score =  865 bits (468),  Expect = 0.0
 Identities = 537/571 (94%), Gaps = 2/571 (0%)
 Strand=Plus/Plus

Query  125  AAAAGAGAGATTTAATACaaaagaaagag-aaaaaagaaagaTATGGCAGGACTCATCAA  183
            ||||||||||||||||||||||||||||| ||||||| | ||||||||||||||| ||||
Sbjct  51   AAAAGAGAGATTTAATACAAAAGAAAGAGAAAAAAAG-ACGATATGGCAGGACTCGTCAA  109

Query  184  CAAGATCGGAGACGCACTCCACATTGGAGGAGGCAACAAGGAAGGTGAGCACAAGAAGGA  243
             ||||||||||| |||||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct  110  AAAGATCGGAGATGCACTCAACATGGGAGGAGGCAACAAGGAAGGCGAGCACAAGAAGGA  169

Query  244  AGAGGAACACAAGAAACACGTTGACGAGCACAAGAGTGGTGAGCACAAAGAAGGTATTGT  303
            ||||||||| ||||| ||||| |||||| ||||||||||||||| |||||||||||||||
Sbjct  170  AGAGGAACAAAAGAAGCACGTCGACGAGAACAAGAGTGGTGAGCGCAAAGAAGGTATTGT  229

Query  304  TGACAAGATCAAAGACAAGATCCACGGTGGTGAAGGTAAAAGCCACGACGGAGAAGGCAA  363
            |||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||
Sbjct  230  TGACAAGATCAAAGACAAGATCGACGGTGGTGAAGGCAAAAGCAACGACGGAGAAGGCAA  289

Query  364  AAGCCACGACGGTGagaagaaaaagaagaaggacaagaaggagaagaaaCATCATGATGA  423
            ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  290  AAGTCACGATGGTGAGAAGAAAAAGAAGAAGGACAAGAAGGAGAAGAAACATCATGATGA  349

Query  424  TGGTCACCACAGCAGCAGCAGTGACAGCGACAGCGATTAAGGTGAGGAAGTGAGGAGGAT  483
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  350  TGGTCACCACAGCAGCAGCAGTGACAGCGACAGCGATTAAGGTGAAGAAGTGAGGAGGAT  409

Query  484  CGCTTGAATAAAACAGATCTGGTTCTGGCTATTATTAATTAATGTTGCTGTATGTTCTTA  543
            ||||| |||||||||||||| |||||| ||||||||||||||||||| ||||||||| ||
Sbjct  410  CGCTTAAATAAAACAGATCTTGTTCTGACTATTATTAATTAATGTTGTTGTATGTTCCTA  469

Query  544  TCATCTTAGAGAGAGGTTAAAGACAGGAGAACCGTGCATCTATCTTTGTTTGTTATGTTT  603
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  470  TCCTCTTAGAGAGAGGTTAAAGACAGGAGAACCGTGCATCTATCTTTGTTTGTTATGTTT  529

Query  604  CTGTTTTCTTGTCATGAAAATTATGCTCATGTATCTTATCTAAATCAAAAATAATAATTT  663
            ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| | 
Sbjct  530  CTGTTTTCTTGTCATGAAAATTATGTTCATGTATCTTATCTAAATCTAAATTAATAAATC  589

Query  664  GATGAATCATAACTTGTAAGACTTGTTATTT  694
             ||||||| ||||||||||||||| ||||||
Sbjct  590  CATGAATCCTAACTTGTAAGACTTTTTATTT  620



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26800410651


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5