BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G54440.2 Length=2246 Score E Sequences producing significant alignments: (Bits) Value Ahg337734 jgi|Araly1|337734|fgenesh1_pg.C_scaffold_1004299 2061 0.0 > Ahg337734 jgi|Araly1|337734|fgenesh1_pg.C_scaffold_1004299 Length=2046 Score = 2061 bits (1116), Expect = 0.0 Identities = 1344/1455 (92%), Gaps = 12/1455 (1%) Strand=Plus/Plus Query 246 TCGATGAGATTTGATGATCCCATGGATGAGTTCAAGAGGAATCGAAAGATGGAGGAAGAT 305 |||| || |||||||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 278 TCGA-GAAATTTGATGATTCCATTGATGAGTTCAAGAGGAATCGAAAGATGGAGGAAGAT 336 Query 306 TCGAAGAAGGTAATCGATGTGAAAGTGGCTGAGAGTGATAAGGGATTCGCGAAATTTGGC 365 || ||||||| || ||||||||||| ||||||||||||||| |||| | |||| |||| Sbjct 337 TCAAAGAAGGCCATTGATGTGAAAGTAGCTGAGAGTGATAAGAGATTTGAGAAACATGGC 396 Query 366 AAGGCAGAGGTTCCGTTTCATATACCGACGTTAACGAAGCCTCAAGAGGAGTATAAGATT 425 |||||| ||| |||||||||| | || ||| ||||||||||||||||||||||||||||| Sbjct 397 AAGGCAAAGGCTCCGTTTCATTTGCCAACGATAACGAAGCCTCAAGAGGAGTATAAGATT 456 Query 426 TTGGTAGACAATGCTAATAATCCTTTTGAGCATGTTTTGTTGGAGAAGAGTGAAGACGGT 485 ||||| || ||||| ||||| || ||||| ||||||||||||||||||||||| |||||| Sbjct 457 TTGGTGGAAAATGCAAATAAACCCTTTGACCATGTTTTGTTGGAGAAGAGTGAGGACGGT 516 Query 486 CTTCGGTTCATTCATCCACTGGAGGAACTATCTGTGATGGACTTTGTTGATAGA-AATCT 544 ||||| || ||||||||| ||||| |||| || |||||||||||||| |||| | ||||| Sbjct 517 CTTCGCTTTATTCATCCATTGGAGAAACTTTCGGTGATGGACTTTGTCGATA-ACAATCT 575 Query 545 AAGTGAGATGAGACCTGTTAAGCCTCTCCCATTGGAAGAGACTCCATTCAAGCTAGTTGA 604 || |||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 576 AACTGAGATTATTCCTGTTAAGCCTCTCCCATTGGAAGAGACTCCATTCAAGCTTGTTGA 635 Query 605 AGAAGTCAAAGATCTTGAGGACTTAGCTGCTG-CATTGCAAAGTGTTGAAGAGTTTGCTG 663 ||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| Sbjct 636 AGAAGTCAAAGATCTCGAGGACTTAGCTGC-GACATTGCAAAGTGTTGAAGAGTTTGCTG 694 Query 664 TCGATCTGGAGCATAATCAGTATAGAACTTTTCAAGGATTAACATGCTTGATGCAAATCT 723 | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 695 TTGATCTGGAGCATAATCAGTATAGATCTTTTCAAGGATTAACATGCTTGATGCAAATCT 754 Query 724 CTACTAGAACCGAGGATTATATTGTTGATATATTCAAGCTTTGGGATCACATTGGTCCTT 783 | || ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 755 CCACCAGAACCGAGGATTATATTGTTGATACATTCAAGCTTTGGGATCACATTGGTCCTC 814 Query 784 ATCTAAGGGAACTCTTCAAAGACCCTAAAAAGAAAAAGGTAATCCATGGAGCAGATCGA- 842 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct 815 ATCTAAGGGAACTCTTCAAAGACCCTAAAAAGAAAAAGGTAATGCATGGAGCAGATC-AT 873 Query 843 GATATTATTTGGCTTCAACGGGACTTTGGCATTTATGTCTGCAATCTTTTTGACACAGGA 902 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 874 GATATTATTTGGCTTCAACGGGACTTCGGCATTTATGTCTGCAATCTTTTTGACACAGGA 933 Query 903 CAGGCTTCAAGGGTGCTAAAGCTGGAGAGAAATAGTCTGGAATTTCTTCTGAAGCATTAT 962 ||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 934 CAGGCCTCAAGGGTGCTAAAGCTGGAGAGAAAGAGTCTGGAATTTCTTTTGAAGCATTAT 993 Query 963 TGTGGAGTTGCTGCAAACAAAGAATACCAAAAAGCAGACTGGAGAATAAGACCCCTTCCA 1022 ||||||||||||||| ||||| |||||||||| ||||||||||||||| ||||||||||| Sbjct 994 TGTGGAGTTGCTGCAGACAAACAATACCAAAATGCAGACTGGAGAATACGACCCCTTCCA 1053 Query 1023 GATGTAATGAAAAGATATGCTAGAGAAGATACACATTATCTTTTGTACATTTATGATGTA 1082 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1054 GATGTAATGACAAGATATGCTAGAGAAGATACACATTATCTTTTGTACATTTATGATGTA 1113 Query 1083 ATGCGAATGGAGTTGCACACAATGGCAAAGGAAGATGAGCAATCTGACTCTCCTCTGGTA 1142 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1114 ATGCGAATAGATTTGCACACAATGGCAAAGGAAGATGAGCAATCTGACTCTCCTCTGGTA 1173 Query 1143 GAGGTGTACAAGCGCAGTTATGACGTGTGCATGCAACTATATGAAAAAGAGCTTTGGACT 1202 |||| |||||| ||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 1174 GAGGCATACAAGGGCAGTTATGACGTGTGCATGCAACTATATGAGAAAGAGCTTTTGACT 1233 Query 1203 AGGGATTCATATCTTCACGTTTATGGGGTTCA-GACAGGTAATCTCAATGCGGTTCAACT 1261 ||||||||||||||||| |||||||||| | | ||||||||||||||||||||||||| Sbjct 1234 GGGGATTCATATCTTCACACTTATGGGGTT-AGGTCAGGTAATCTCAATGCGGTTCAACT 1292 Query 1262 TTCCATTGTTGCGGGGCTTTGTGAATGGCGGGATCGGATTGCACGCGCAGATGATGAGAG 1321 ||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 1293 TTCCATTGTTGCGGGTCTTTGTGAATGGCGGGATCGGATTGCACGTGCAGACGATGAGAG 1352 Query 1322 CACCGGTTATGTATTGCCAAATAAAACTCTTTTTGACATAGCCAAGGAGATGCCAATTGT 1381 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 1353 CACCGGTTATGTATTACCAAATAAAACTCTTTTTGACATAGCCAAGGACATGCCAATTAC 1412 Query 1382 TGTTGCCCAGTTGCGCCGTTTGTTGAAGTCAAAGCTTCCTTACCTCGAGCGTAATTTTGA 1441 | ||| ||||||||||| |||||||||||||||| ||||||| |||||||||||||||| Sbjct 1413 TACTGCTCAGTTGCGCCGGTTGTTGAAGTCAAAGCATCCTTACATCGAGCGTAATTTTGA 1472 Query 1442 CGCAGTGATCAGTGTCATCAGACGATCAATGCAAAATGCAGCGGCATTCGAGCCAGTTGT 1501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1473 CGCAGTGATCAGTGTCATCAGACGATCAATGCAAAATGCAGCGGCATTCGAGCCAGTTGT 1532 Query 1502 TCAATCTTTGAAAGATAGGCGTCCTGAAACAGTGGTTGAAATGAATATAGAACCTAAGAT 1561 ||||||||| |||||| |||||||||||||||||||||||| |||||| ||||||||||| Sbjct 1533 TCAATCTTTAAAAGATTGGCGTCCTGAAACAGTGGTTGAAAAGAATATCGAACCTAAGAT 1592 Query 1562 TGAGAAAACAGACACAGGAGCTTCAGCGTCTTCTCTGAGTCTGGAGAAGGTTTGTGTGGA 1621 ||||||||||| ||||| ||||||| | |||||||||||| || ||||| ||| |||||| Sbjct 1593 TGAGAAAACAGGCACAGAAGCTTCATCCTCTTCTCTGAGTTTGAAGAAGTTTTCTGTGGA 1652 Query 1622 TGATTCAAAGAAACAAAGCAG---TGGTTTTGGAGTTTTGCCGTTAAAGAGGAAGTTGGA 1678 ||||||||| ||||||||||| |||||||||| |||||||| |||||| ||||| || Sbjct 1653 TGATTCAAAAAAACAAAGCAGCAGTGGTTTTGGAAATTTGCCGTCAAAGAGAAAGTTTGA 1712 Query 1679 AAGTGACAAAACGGT 1693 ||| ||||||| ||| Sbjct 1713 AAGCGACAAAAAGGT 1727 Score = 575 bits (311), Expect = 5e-163 Identities = 441/499 (88%), Gaps = 28/499 (6%) Strand=Plus/Plus Query 1687 AAACGGTGGTTGAAAAGAATATCGAACCTAAGATTGAGAAAACAGGCACAGAAGCTTCAG 1746 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 AAACAGTGGTTGAAAAGAATATCGAACCTAAGATTGAGAAAACAGGCACAGAAGCTTCAT 1618 Query 1747 CTTCTTCTCTGAGTTCGAAGAAGGTTTGTGTGGATGATTCAAAGAAACAAAGCAG---TG 1803 | ||||||||||||| ||||||| ||| ||||||||||||||| ||||||||||| || Sbjct 1619 CCTCTTCTCTGAGTTTGAAGAAGTTTTCTGTGGATGATTCAAAAAAACAAAGCAGCAGTG 1678 Query 1804 GTTTTGGAGTTTTGCTGTCAAAGAGGAAGTTTGAAAGTGATAACAAGTTGCAGGTAAAAG 1863 |||||||| ||||| ||||||||| ||||||||||| || || || ||||||||| Sbjct 1679 GTTTTGGAAATTTGCCGTCAAAGAGAAAGTTTGAAAGCGACAA-AA-----AGGTAAAAG 1732 Query 1864 AAGAGGTCAAAGTGTCCAAGTCCAAGCCAGATAAGGTAATCATAGTGGTGgatgatgatg 1923 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 1733 AAGAGGTCAAAGTGTCCAAGTCCAAGCCAAATGAGGTAATCATAGTGGTGGATGATGATG 1792 Query 1924 atgatgatgatgatgatgaGTCTTATGAACAGAGCACG-AAAGCCGCTGATGCTTTGGAC 1982 | ||||| |||||||| | ||||||||||||||| || ||| |||||||||||||| || Sbjct 1793 ACGATGACGATGATGA-G--TCTTATGAACAGAGCTCGGAAA-CCGCTGATGCTTTGAAC 1848 Query 1983 AGAGTTTCGGAAACGCCTTCGAAGGGATCACCATCGTTGACTCAAAAGCCGAAGACATGT 2042 |||||||||||||||||||| |||||||||| |||| |||||||||||||||||| |||| Sbjct 1849 AGAGTTTCGGAAACGCCTTCTAAGGGATCACTATCGATGACTCAAAAGCCGAAGATATGT 1908 Query 2043 AATACAG-AGGTTATTGTGTTAGACGATGATGATGA--C------T--C--GGAAAGCAG 2089 |||| || || | || |||||||||||||||||||| | | | ||||||||| Sbjct 1909 AATA-AGGAGATAATAGTGTTAGACGATGATGATGAGTCAGAGAATGACTCGGAAAGCAG 1967 Query 2090 AGAAGATGAAGACATGCGTAGGAGAAGTGAGAAACATAGGAGATTCATGAATATGAAACG 2149 |||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1968 AGAAGAGGAAGAGATGCGTAGGAGAAGTGAGAAGCATAGGAGATTCATGAATATGAAACG 2027 Query 2150 TGGCTTTCTTAACATTTAG 2168 |||||||||||||||||| Sbjct 2028 CGGCTTTCTTAACATTTAG 2046 Score = 267 bits (144), Expect = 3e-70 Identities = 158/165 (96%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 93 CCGAAGAATCTCTCAAAACTATCTTCGTCTTCTCTTACAATTCCGACGAACAGAGATTTC 152 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 61 CCGACGAATCTCTCAAAACTATCTTCGTCTTCTCGTACAATTCCGACGAACAGAGATTTC 120 Query 153 CATTCTCTCTCCAAGTCCGACGAGTTCAAGCGTCCGATCGATGAGTTAGCTTGGAGCTCG 212 |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| |||| Sbjct 121 CATTCTCTCTACAAGTCCGACGAGTTCAAGCGTCCGATCGATGAGATAGCTCGGATCTCG 180 Query 213 CAGTCTGTTCTTGAGACGATTGGTGGTAAGAAATCGATGAGATTT 257 |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 181 CAGTCTGTTCTTGAGACGATTGGTGGTAAGAAATCGATGACATTT 225 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84560343900 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5