BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54440.2
Length=2246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337734 jgi|Araly1|337734|fgenesh1_pg.C_scaffold_1004299 2061 0.0
> Ahg337734 jgi|Araly1|337734|fgenesh1_pg.C_scaffold_1004299
Length=2046
Score = 2061 bits (1116), Expect = 0.0
Identities = 1344/1455 (92%), Gaps = 12/1455 (1%)
Strand=Plus/Plus
Query 246 TCGATGAGATTTGATGATCCCATGGATGAGTTCAAGAGGAATCGAAAGATGGAGGAAGAT 305
|||| || |||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 278 TCGA-GAAATTTGATGATTCCATTGATGAGTTCAAGAGGAATCGAAAGATGGAGGAAGAT 336
Query 306 TCGAAGAAGGTAATCGATGTGAAAGTGGCTGAGAGTGATAAGGGATTCGCGAAATTTGGC 365
|| ||||||| || ||||||||||| ||||||||||||||| |||| | |||| ||||
Sbjct 337 TCAAAGAAGGCCATTGATGTGAAAGTAGCTGAGAGTGATAAGAGATTTGAGAAACATGGC 396
Query 366 AAGGCAGAGGTTCCGTTTCATATACCGACGTTAACGAAGCCTCAAGAGGAGTATAAGATT 425
|||||| ||| |||||||||| | || ||| |||||||||||||||||||||||||||||
Sbjct 397 AAGGCAAAGGCTCCGTTTCATTTGCCAACGATAACGAAGCCTCAAGAGGAGTATAAGATT 456
Query 426 TTGGTAGACAATGCTAATAATCCTTTTGAGCATGTTTTGTTGGAGAAGAGTGAAGACGGT 485
||||| || ||||| ||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct 457 TTGGTGGAAAATGCAAATAAACCCTTTGACCATGTTTTGTTGGAGAAGAGTGAGGACGGT 516
Query 486 CTTCGGTTCATTCATCCACTGGAGGAACTATCTGTGATGGACTTTGTTGATAGA-AATCT 544
||||| || ||||||||| ||||| |||| || |||||||||||||| |||| | |||||
Sbjct 517 CTTCGCTTTATTCATCCATTGGAGAAACTTTCGGTGATGGACTTTGTCGATA-ACAATCT 575
Query 545 AAGTGAGATGAGACCTGTTAAGCCTCTCCCATTGGAAGAGACTCCATTCAAGCTAGTTGA 604
|| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 576 AACTGAGATTATTCCTGTTAAGCCTCTCCCATTGGAAGAGACTCCATTCAAGCTTGTTGA 635
Query 605 AGAAGTCAAAGATCTTGAGGACTTAGCTGCTG-CATTGCAAAGTGTTGAAGAGTTTGCTG 663
||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||
Sbjct 636 AGAAGTCAAAGATCTCGAGGACTTAGCTGC-GACATTGCAAAGTGTTGAAGAGTTTGCTG 694
Query 664 TCGATCTGGAGCATAATCAGTATAGAACTTTTCAAGGATTAACATGCTTGATGCAAATCT 723
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 695 TTGATCTGGAGCATAATCAGTATAGATCTTTTCAAGGATTAACATGCTTGATGCAAATCT 754
Query 724 CTACTAGAACCGAGGATTATATTGTTGATATATTCAAGCTTTGGGATCACATTGGTCCTT 783
| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 755 CCACCAGAACCGAGGATTATATTGTTGATACATTCAAGCTTTGGGATCACATTGGTCCTC 814
Query 784 ATCTAAGGGAACTCTTCAAAGACCCTAAAAAGAAAAAGGTAATCCATGGAGCAGATCGA- 842
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 815 ATCTAAGGGAACTCTTCAAAGACCCTAAAAAGAAAAAGGTAATGCATGGAGCAGATC-AT 873
Query 843 GATATTATTTGGCTTCAACGGGACTTTGGCATTTATGTCTGCAATCTTTTTGACACAGGA 902
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 874 GATATTATTTGGCTTCAACGGGACTTCGGCATTTATGTCTGCAATCTTTTTGACACAGGA 933
Query 903 CAGGCTTCAAGGGTGCTAAAGCTGGAGAGAAATAGTCTGGAATTTCTTCTGAAGCATTAT 962
||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 934 CAGGCCTCAAGGGTGCTAAAGCTGGAGAGAAAGAGTCTGGAATTTCTTTTGAAGCATTAT 993
Query 963 TGTGGAGTTGCTGCAAACAAAGAATACCAAAAAGCAGACTGGAGAATAAGACCCCTTCCA 1022
||||||||||||||| ||||| |||||||||| ||||||||||||||| |||||||||||
Sbjct 994 TGTGGAGTTGCTGCAGACAAACAATACCAAAATGCAGACTGGAGAATACGACCCCTTCCA 1053
Query 1023 GATGTAATGAAAAGATATGCTAGAGAAGATACACATTATCTTTTGTACATTTATGATGTA 1082
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 GATGTAATGACAAGATATGCTAGAGAAGATACACATTATCTTTTGTACATTTATGATGTA 1113
Query 1083 ATGCGAATGGAGTTGCACACAATGGCAAAGGAAGATGAGCAATCTGACTCTCCTCTGGTA 1142
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 ATGCGAATAGATTTGCACACAATGGCAAAGGAAGATGAGCAATCTGACTCTCCTCTGGTA 1173
Query 1143 GAGGTGTACAAGCGCAGTTATGACGTGTGCATGCAACTATATGAAAAAGAGCTTTGGACT 1202
|||| |||||| ||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1174 GAGGCATACAAGGGCAGTTATGACGTGTGCATGCAACTATATGAGAAAGAGCTTTTGACT 1233
Query 1203 AGGGATTCATATCTTCACGTTTATGGGGTTCA-GACAGGTAATCTCAATGCGGTTCAACT 1261
||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||
Sbjct 1234 GGGGATTCATATCTTCACACTTATGGGGTT-AGGTCAGGTAATCTCAATGCGGTTCAACT 1292
Query 1262 TTCCATTGTTGCGGGGCTTTGTGAATGGCGGGATCGGATTGCACGCGCAGATGATGAGAG 1321
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1293 TTCCATTGTTGCGGGTCTTTGTGAATGGCGGGATCGGATTGCACGTGCAGACGATGAGAG 1352
Query 1322 CACCGGTTATGTATTGCCAAATAAAACTCTTTTTGACATAGCCAAGGAGATGCCAATTGT 1381
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1353 CACCGGTTATGTATTACCAAATAAAACTCTTTTTGACATAGCCAAGGACATGCCAATTAC 1412
Query 1382 TGTTGCCCAGTTGCGCCGTTTGTTGAAGTCAAAGCTTCCTTACCTCGAGCGTAATTTTGA 1441
| ||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1413 TACTGCTCAGTTGCGCCGGTTGTTGAAGTCAAAGCATCCTTACATCGAGCGTAATTTTGA 1472
Query 1442 CGCAGTGATCAGTGTCATCAGACGATCAATGCAAAATGCAGCGGCATTCGAGCCAGTTGT 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 CGCAGTGATCAGTGTCATCAGACGATCAATGCAAAATGCAGCGGCATTCGAGCCAGTTGT 1532
Query 1502 TCAATCTTTGAAAGATAGGCGTCCTGAAACAGTGGTTGAAATGAATATAGAACCTAAGAT 1561
||||||||| |||||| |||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1533 TCAATCTTTAAAAGATTGGCGTCCTGAAACAGTGGTTGAAAAGAATATCGAACCTAAGAT 1592
Query 1562 TGAGAAAACAGACACAGGAGCTTCAGCGTCTTCTCTGAGTCTGGAGAAGGTTTGTGTGGA 1621
||||||||||| ||||| ||||||| | |||||||||||| || ||||| ||| ||||||
Sbjct 1593 TGAGAAAACAGGCACAGAAGCTTCATCCTCTTCTCTGAGTTTGAAGAAGTTTTCTGTGGA 1652
Query 1622 TGATTCAAAGAAACAAAGCAG---TGGTTTTGGAGTTTTGCCGTTAAAGAGGAAGTTGGA 1678
||||||||| ||||||||||| |||||||||| |||||||| |||||| ||||| ||
Sbjct 1653 TGATTCAAAAAAACAAAGCAGCAGTGGTTTTGGAAATTTGCCGTCAAAGAGAAAGTTTGA 1712
Query 1679 AAGTGACAAAACGGT 1693
||| ||||||| |||
Sbjct 1713 AAGCGACAAAAAGGT 1727
Score = 575 bits (311), Expect = 5e-163
Identities = 441/499 (88%), Gaps = 28/499 (6%)
Strand=Plus/Plus
Query 1687 AAACGGTGGTTGAAAAGAATATCGAACCTAAGATTGAGAAAACAGGCACAGAAGCTTCAG 1746
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 AAACAGTGGTTGAAAAGAATATCGAACCTAAGATTGAGAAAACAGGCACAGAAGCTTCAT 1618
Query 1747 CTTCTTCTCTGAGTTCGAAGAAGGTTTGTGTGGATGATTCAAAGAAACAAAGCAG---TG 1803
| ||||||||||||| ||||||| ||| ||||||||||||||| ||||||||||| ||
Sbjct 1619 CCTCTTCTCTGAGTTTGAAGAAGTTTTCTGTGGATGATTCAAAAAAACAAAGCAGCAGTG 1678
Query 1804 GTTTTGGAGTTTTGCTGTCAAAGAGGAAGTTTGAAAGTGATAACAAGTTGCAGGTAAAAG 1863
|||||||| ||||| ||||||||| ||||||||||| || || || |||||||||
Sbjct 1679 GTTTTGGAAATTTGCCGTCAAAGAGAAAGTTTGAAAGCGACAA-AA-----AGGTAAAAG 1732
Query 1864 AAGAGGTCAAAGTGTCCAAGTCCAAGCCAGATAAGGTAATCATAGTGGTGgatgatgatg 1923
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1733 AAGAGGTCAAAGTGTCCAAGTCCAAGCCAAATGAGGTAATCATAGTGGTGGATGATGATG 1792
Query 1924 atgatgatgatgatgatgaGTCTTATGAACAGAGCACG-AAAGCCGCTGATGCTTTGGAC 1982
| ||||| |||||||| | ||||||||||||||| || ||| |||||||||||||| ||
Sbjct 1793 ACGATGACGATGATGA-G--TCTTATGAACAGAGCTCGGAAA-CCGCTGATGCTTTGAAC 1848
Query 1983 AGAGTTTCGGAAACGCCTTCGAAGGGATCACCATCGTTGACTCAAAAGCCGAAGACATGT 2042
|||||||||||||||||||| |||||||||| |||| |||||||||||||||||| ||||
Sbjct 1849 AGAGTTTCGGAAACGCCTTCTAAGGGATCACTATCGATGACTCAAAAGCCGAAGATATGT 1908
Query 2043 AATACAG-AGGTTATTGTGTTAGACGATGATGATGA--C------T--C--GGAAAGCAG 2089
|||| || || | || |||||||||||||||||||| | | | |||||||||
Sbjct 1909 AATA-AGGAGATAATAGTGTTAGACGATGATGATGAGTCAGAGAATGACTCGGAAAGCAG 1967
Query 2090 AGAAGATGAAGACATGCGTAGGAGAAGTGAGAAACATAGGAGATTCATGAATATGAAACG 2149
|||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1968 AGAAGAGGAAGAGATGCGTAGGAGAAGTGAGAAGCATAGGAGATTCATGAATATGAAACG 2027
Query 2150 TGGCTTTCTTAACATTTAG 2168
||||||||||||||||||
Sbjct 2028 CGGCTTTCTTAACATTTAG 2046
Score = 267 bits (144), Expect = 3e-70
Identities = 158/165 (96%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 93 CCGAAGAATCTCTCAAAACTATCTTCGTCTTCTCTTACAATTCCGACGAACAGAGATTTC 152
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CCGACGAATCTCTCAAAACTATCTTCGTCTTCTCGTACAATTCCGACGAACAGAGATTTC 120
Query 153 CATTCTCTCTCCAAGTCCGACGAGTTCAAGCGTCCGATCGATGAGTTAGCTTGGAGCTCG 212
|||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 121 CATTCTCTCTACAAGTCCGACGAGTTCAAGCGTCCGATCGATGAGATAGCTCGGATCTCG 180
Query 213 CAGTCTGTTCTTGAGACGATTGGTGGTAAGAAATCGATGAGATTT 257
|||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 CAGTCTGTTCTTGAGACGATTGGTGGTAAGAAATCGATGACATTT 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84560343900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5