BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54445.1
Length=237
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924197 jgi|Araly1|924197|scaffold_105478.1 339 7e-93
Ahg474719 jgi|Araly1|474719|fgenesh2_kg.1__4673__AT1G54445.1 333 3e-91
> Ahg924197 jgi|Araly1|924197|scaffold_105478.1
Length=282
Score = 339 bits (183), Expect = 7e-93
Identities = 220/238 (92%), Gaps = 2/238 (1%)
Strand=Plus/Plus
Query 1 ATGACTACGAAGATGTTTTCATATGTTTTGTTACATTCATTGATGATGTTTGCTATCATC 60
||||| || ||||| |||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 26 ATGACAACAAAGATCTTTTCATATGTTTTATTACATTCATTGATGATGTTTGCTCTCATC 85
Query 61 CTTTCTTCCATGGGTTCACCAGAAAAATATTATGACTGTAAGCAAGACGGATGTATAACC 120
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 86 CTTTCTTCCATGGGTTCACCAGGGAAATATTATGACTGTAAGCAAGACGGATGTATAACC 145
Query 121 ACACCACCATGCTGGAGAAAATGCGTGTCTATGGGATA-CCCGAAAGGAGGAGAATGTCG 179
|||||||||||||||||||||||| ||||||||||||| ||| |||||||| ||||||||
Sbjct 146 ACACCACCATGCTGGAGAAAATGCTTGTCTATGGGATATCCC-AAAGGAGGGGAATGTCG 204
Query 180 AATATACAGTTATGGCGGTGTTTGTTGTTGTGACCTCACTTCTAAGCCTCCTAATTAA 237
|| ||| |||||||| ||||||||||| ||||| |||| ||||||||||||||| |||
Sbjct 205 AACATATAGTTATGGTGGTGTTTGTTGCTGTGAACTCAGTTCTAAGCCTCCTAACTAA 262
> Ahg474719 jgi|Araly1|474719|fgenesh2_kg.1__4673__AT1G54445.1
Length=237
Score = 333 bits (180), Expect = 3e-91
Identities = 219/238 (92%), Gaps = 2/238 (1%)
Strand=Plus/Plus
Query 1 ATGACTACGAAGATGTTTTCATATGTTTTGTTACATTCATTGATGATGTTTGCTATCATC 60
||||| || ||||| |||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1 ATGACAACAAAGATCTTTTCATATGTTTTATTACATTCATTGATGATGTTTGCTCTCATC 60
Query 61 CTTTCTTCCATGGGTTCACCAGAAAAATATTATGACTGTAAGCAAGACGGATGTATAACC 120
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTTCTTCCATGGGCTCACCAGGGAAATATTATGACTGTAAGCAAGACGGATGTATAACC 120
Query 121 ACACCACCATGCTGGAGAAAATGCGTGTCTATGGGATA-CCCGAAAGGAGGAGAATGTCG 179
|||||||||||||||||||||||| ||||||||||||| ||| |||||||| ||||||||
Sbjct 121 ACACCACCATGCTGGAGAAAATGCTTGTCTATGGGATATCCC-AAAGGAGGGGAATGTCG 179
Query 180 AATATACAGTTATGGCGGTGTTTGTTGTTGTGACCTCACTTCTAAGCCTCCTAATTAA 237
|| ||| |||||||| ||||||||||| ||||| |||| ||||||||||||||| |||
Sbjct 180 AACATATAGTTATGGTGGTGTTTGTTGCTGTGAACTCAGTTCTAAGCCTCCTAACTAA 237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8172287854
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5