BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54450.1
Length=1838
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914801 jgi|Araly1|914801|Al_scaffold_0001_5055 2532 0.0
Ahg489669 jgi|Araly1|489669|fgenesh2_kg.6__2803__AT5G28900.1 809 0.0
Ahg494587 jgi|Araly1|494587|fgenesh2_kg.8__403__AT5G44090.1 501 7e-141
> Ahg914801 jgi|Araly1|914801|Al_scaffold_0001_5055
Length=1608
Score = 2532 bits (1371), Expect = 0.0
Identities = 1531/1610 (95%), Gaps = 4/1610 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTCGATAACGTTAGATATAGAGCTGTTGCAGTTACCAGAGACATCGCCAATGTCG 60
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1 ATGGAGTCGATAACGTTAGATATAGAGCTGTTGCAGTTGCCGGAGACATCGCCAATGTCG 60
Query 61 ATGAAATCTAATCAAGATTTTGTTAAGAAGCTCTTTGATCAATGGCTTGCTCTTCCTGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGAAATCTAATCAAGATTTTGTTAAGAAGCTCTTTGATCAATGGCTTGCTCTTCCTGAA 120
Query 121 ACCAATCGTTTGGTTACATCTTTGGTAAATGATGCAAAGGCAGGAGTGGCTTTGAATGTT 180
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 ACCAATCGATTGGTCACATCTTTGGTAAATGATGCAAAGGCAGGAGTGGCTCTGAATGTT 180
Query 181 ATGTGTGGAGGAGGCTCTTCTGGCACGAATTCAGGGTCGAATAGTCCATTAGCTTCAATG 240
|||||||||||||||||||| || || ||||||||||||||||||||||| ||||| |||
Sbjct 181 ATGTGTGGAGGAGGCTCTTCGGGTACAAATTCAGGGTCGAATAGTCCATTGGCTTCGATG 240
Query 241 TTTCCGGCACGCAATGGGCCTCCTCTTTCTCCAAGGAATTCAACTGGTTCTCCTCGGATC 300
||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 241 TTTCCAGCACGGAATGGGCCTCCTCTTTCTCCAAGGAACTCAACTGGTTCGCCTCGGATC 300
Query 301 GCCAGACAAAGAACTGGACTATCAAATCTTAGTTCTCCTCTCAAAGTAGTTTCTGATCAT 360
| |||||||| ||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 301 ACAAGACAAAGGACTGGTCTTTCCAATCTTAGTTCTCCTCTCAAAGTAGTTTCTGATCAT 360
Query 361 GTTAAAGAACTCATTCCTCAGTTTTACTTTGAAGATGGTCGGCCACCACCAAATGATCTA 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 GTTAAAGAACTCATTCCTCAGTTTTACTTCGAAGATGGTCGGCCACCACCAAATGATCTA 420
Query 421 AAAGAGCAGTGCATAGCTAAGATCAATAGTCTTTTCTATGGCCACGAGGATGGTTTGCAA 480
||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 421 AAAGAGCAGTGTATAGCTAAGATCAACAGTCTTTTTTATGGCCATGAGGATGGTTTGCAA 480
Query 481 CTCCAAGAATTTAAATTAGTCACTACTGAAATATGCAAAGTTCCATCAtttttttCCACC 540
|| |||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||
Sbjct 481 CTGCAAGAATTTAAATTGGTCACTACTGAGATCTGCAAGGTTCCATCATTTTTTTCCACC 540
Query 541 TCCATTTTCAAGAAAGTTGATACCAATAACACTGGTTTTGTGAAAAGAGAAGACTTCATT 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACCATTTTCAAGAAAGTTGATACCAATAACACTGGTTTTGTGAAAAGAGAAGACTTCATT 600
Query 601 GATTATTGGGTTAAGGGAAATATGTTAACAAAGGAGATAACAAGTCAAG-TATTTACAAT 659
|||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 601 GATTATTGGGTTAAGGGAAATATGTTGACAAAGGAGATAACAAGTC-AGATATTTACAAT 659
Query 660 A-TTGAAGCAGCCAGATCACAACTACCTTGTCCAGGATGATTTCAAGCCAGTGCTTCAAG 718
| || ||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 660 ACTT-AAGCAACCAGATCACAAGTACCTTGTCCAGGATGATTTCAAGCCTGTGCTCCAAG 718
Query 719 AATTATTGGCAACACACCCTGGTCTTGAATTCTTGCAAGGCACACCGGAATTTCAGGATA 778
|| |||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 719 AACTATTAGCAACACACCCTGGTCTTGAATTCTTGCAAGGAACACCTGAGTTTCAGGATA 778
Query 779 GATATGCTGAAACTGTAATATACAGAATATATTACTACATAAATAGGAGTGGAAATGGGC 838
|||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 779 GATATGCTGAAACTGTAATATACAGAATCTATTACTATATAAATAGGAGTGGGAATGGGC 838
Query 839 ATCTTACCTTGAGAGAGCTTAAGCGAGGAAATTTAGTTGACGCAATGCAGCATGCCGATG 898
||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 839 ATCTTACATTGAGAGAGCTTAAGAGAGGAAATTTAGTTGATGCAATGCAGCATGCCGATG 898
Query 899 AAGAAGAGGACATCAATAAGGTGTTGAGGTACTTCTCGTATGAACATTTCTATGTCATAT 958
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 899 AAGAAGAGGACATCAATAAAGTGTTGAGGTACTTCTCGTATGAACATTTTTATGTCATAT 958
Query 959 ACTGCAAGTTCTGGGAGTTGGATACAGATCATGATTTCTTAATCGACAAAGAGAATCTCA 1018
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 959 ACTGCAAGTTCTGGGAGCTGGATACAGATCATGATTTCTTGATCGACAAAGAGAATCTCA 1018
Query 1019 TCCGATATAGTAACCATGCGCTCACCTATAGGATTGTCGATCGAATCTTTTCACAGGTAC 1078
||||||||||||| ||||| |||||||| ||||||||||| ||||||||||| |||||||
Sbjct 1019 TCCGATATAGTAATCATGCCCTCACCTACAGGATTGTCGACCGAATCTTTTCTCAGGTAC 1078
Query 1079 CGAGGAAGTTTACTAGTAAAACCGAAGGAAAGATGGGTTATGAGGATTTTGTTTACTTCA 1138
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1079 CAAGGAAGTTTACTAGTAAAAGCGAAGGAAAGATGGGTTATGAGGATTTTGTTTACTTTA 1138
Query 1139 TATTGGCTGAAGAAGACAAGTCATCAGAACCTAGTCTTGAGTATTGGTTCAAGTGCATTG 1198
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1139 TATTAGCTGAAGAAGATAAGTCATCAGAACCTAGTCTTGAGTATTGGTTCAAGTGCATAG 1198
Query 1199 ATTTGGATGCAAATGGAGTTTTGACGCGGAACGAGCTGCAATTCTTTTACGAGGAGCAGC 1258
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1199 ATTTGGATGCAAATGGAGTTTTGACGCGGAACGAGCTACAATTCTTTTACGAGGAGCAGC 1258
Query 1259 TACATAGAATGGAATGCATGGCGCAAGAGGCGGTGTTGTTTGAGGATATTTTGTGCCAAT 1318
| ||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||
Sbjct 1259 TGCATAGAATGGAATGCATGGCGCAAGAGGCTGTGCTGTTTGAGGATATTCTGTGCCAAT 1318
Query 1319 TATTCGACATGGTCAAACCAGAGGACGAAGGGTTCATTTGTCTAAATGATTTGAAGGGTT 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TATTCGACATGGTCAAACCAGAGGACGAAGGGTTCATTTGTCTAAATGATTTGAAGGGTT 1378
Query 1379 CTAAACTTTCTGGAAATGTCTTCAACATACTTTTTAACCTCAACAAGTTTATGGCGTTTG 1438
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1379 CTAAACTTTCTGGAAATGTCTTTAACATACTTTTCAACCTCAACAAGTTTATGGCGTTTG 1438
Query 1439 AAACGCGTGATCCCTTCCTCATCCGCCAGGAGCGCGCAAATCCGACATGGACAGAGTGGG 1498
|||| || |||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 1439 AAACTCGCGATCCCTTCCTCATTCGTCAGGAGCGGGCAAATCCGACATGGACAGAGTGGG 1498
Query 1499 ATCGTTTTGCTCATAGAGAATATATTAGGCTATCAATGGAAGAAGATGTCGAAGATGCTT 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 ATCGTTTTGCTCATAGAGAATATATTAGGCTATCAATGGAAGAAGATGTCGAAGATGCTT 1558
Query 1559 CTAATGGAAGTGCTGAAGCATGGGACGACTCACTTGAGGTCCCCTTTTGA 1608
|||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1559 CTAATGGAAGTGCTGAAGCATGGGACGACTCACTTGAGGTTCCCTTTTGA 1608
> Ahg489669 jgi|Araly1|489669|fgenesh2_kg.6__2803__AT5G28900.1
Length=1947
Score = 809 bits (438), Expect = 0.0
Identities = 1033/1315 (79%), Gaps = 62/1315 (5%)
Strand=Plus/Plus
Query 328 CTTA-GTTCTCCTCTCAAAGTAGT-TTCTGATCATGTTAAAGAACTC-ATTCCTCAGTTT 384
|||| ||||| |||| ||||| || | || | ||||||||| | | || |||||||||
Sbjct 378 CTTAGGTTCTACTCTGAAAGTTGTCAAC-GAGCCTGTTAAAGAGC-CAATACCTCAGTTT 435
Query 385 TACTTT-GAAGATGGTCGGCCACCACCAAATGATCTAAAAGAGCAGTGCATAGCTAAG-A 442
|| ||| || ||||||| || ||||||| || |||||||||| || || | | || |
Sbjct 436 TA-TTTCCAAAATGGTCGCCCCCCACCAAGCGAGATAAAAGAGCAATGTAT-GTTTAGAA 493
Query 443 TCAATAGTCTT-TTCTATGGCCACGA-GGATGGTTTGCA-ACTCCAAGAATTTAAATTAG 499
||||| ||| || ||||| ||| | |||||| || || | | |||||||| |||||||
Sbjct 494 TCAAT-CACTTCTTTTATGGTCAC-ATGGATGGGTTACAGA-TACAAGAATTCAAATTAG 550
Query 500 TCACTACTGAAATATGCAAAG-TTCCATCAttt-ttttCCACCTCCA-TTTTCAAGAAAG 556
|||| | ||||| ||| ||| | ||||| ||| || |||| || || ||||| || |||
Sbjct 551 TCACCAGAGAAATCTGC-AAGCTCCCATC-TTTCTTCTCCA-CTTCACTTTTCCAG-AAG 606
Query 557 -TTGATACCAATAACACTGGTTTTGTGAAAAGAGAAGAC-TTCATTGATTATTGGGTTAA 614
| ||| ||||||| || |||||||| | ||||||| | || |||||||||||||| ||
Sbjct 607 ATCGATGCCAATAATACAGGTTTTGTTACTAGAGAAG-CATTTATTGATTATTGGGTAAA 665
Query 615 -GGGAAATATGTTAACAAAGGAGATAACAAGTCAAGTATTTACA-ATATTGAAGCAGCCA 672
||| || ||||| | || ||| | ||| | ||| | || | | ||| | |||||| |
Sbjct 666 CGGG-AACATGTTGATAATGGATACAACGACCCAAATCTTCA-AGATACTAAAGCAGAAA 723
Query 673 GATCACAACTACCTTGTCCAGGATGATTTCAAGCCAGTGCTTCAAGAATTATTGGCAACA 732
||||| | | | |||| ||||||||||||| || | ||| ||||| | ||||| ||
Sbjct 724 GATCAGAGTTTCATTGTGAAGGATGATTTCAAACCCCTACTTAAAGAACTGTTGGCGACG 783
Query 733 CACCCTGGTCTTGAATTCTTGCAAGGCACACCGGAATTTCAGGATAGATATGCTGAAACT 792
|| ||||| || || ||| ||||| |||||| |||||||| || |||||||||||||||
Sbjct 784 CATCCTGGGCTAGAGTTCCTGCAATCCACACCTGAATTTCAAGAAAGATATGCTGAAACT 843
Query 793 GTAATATACAGAATATATTACTACATAAATAGGA-GTGGAAATGGGC-ATCTTACCTTGA 850
|| | ||| |||||| ||| |||||||||| || ||| ||||| | | |||| || |
Sbjct 844 GTCACCTACCGAATATTTTATTACATAAATA-GATCTGGCAATGGTCGA-ATTACATTTA 901
Query 851 GAGAGCTTAAGCGAGGAAATTTAGTTGACGCAATGC-AGCATGCCGATGAAGAAGAGGAC 909
| |||||||| || ||||| ||| |||| || |||| | ||||| ||||||||||| ||
Sbjct 902 GGGAGCTTAAACGGGGAAACTTAATTGATGCTATGCTA-CATGCTGATGAAGAAGAAGAT 960
Query 910 ATCAATAAGGTGTTGAGGTACTTCTCGTATGAACATTTCTATGTCATATACTGCAAGTTC 969
|| || || |||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 961 ATTAACAAAGTGTTGAGATACTTCTCATATGAGCATTTCTATGTCATATACTGCAAGTTC 1020
Query 970 TGGGAGTTGGATACAGATCATGATTTCTTAATCGACAAAGAGAATCTCATCCGATATAGT 1029
|||||| ||||||| ||||| |||||| | || |||||||| ||||| || ||||| |
Sbjct 1021 TGGGAGCTGGATACGGATCACGATTTCCTGATTGACAAAGAAAATCTTATGAGATATGGA 1080
Query 1030 AACCATGCGCTCACCTATAGGATTGTCGATC-GAATCTTTTCACAGGTACCGAGGAAGTT 1088
|||||||| || || || |||||||||| | |||| || || ||||| | ||||||||
Sbjct 1081 AACCATGCTCTTACTTACCGGATTGTCGA-CAGAATATTCTCTCAGGTTGCTAGGAAGTT 1139
Query 1089 TACTAGTAAAACCGAAGGAAAGATGGGTTATGAGGATTTTGTTTACTTCATA-TTGGCTG 1147
||||| ||| ||||| |||||||| |||||||| ||||| || |||||| ||| | |
Sbjct 1140 CACTAGCAAAGTTGAAGGGAAGATGGGGTATGAGGACTTTGTCTATTTCATACTTG-CGG 1198
Query 1148 AAGAAGACAAGTCATCAGAACCTAGTCTTGAGTATTGGTTCAAGTGCATTGATTTGGATG 1207
||||||| || || ||||| ||||| || || |||||||| |||||||| || |||||||
Sbjct 1199 AAGAAGATAAATCGTCAGAGCCTAGCCTAGAATATTGGTTTAAGTGCATAGACTTGGATG 1258
Query 1208 CAAATGG-AGTT-TTGACGCGGAACGAGCTGCAATTCTTTTACGAGGAGCAGCTACATAG 1265
||||||| | || || ||||| || ||| ||||||||||||| || |||||| | ||| |
Sbjct 1259 CAAATGGGA-TTATT-ACGCGAAATGAGATGCAATTCTTTTATGAAGAGCAGTTGCATCG 1316
Query 1266 AATGGAATGCATGGCGCAAGAGGCGGTGTTGTTT--GAGGATATTTTGTGCCA-ATTATT 1322
|||||| ||||||||||||||||| |||| ||| |||||||| || || || || |||
Sbjct 1317 AATGGAGTGCATGGCGCAAGAGGC--TGTTCTTTTCGAGGATATCTTATGTCAGATGATT 1374
Query 1323 CGACATGGTCAAACCAGAGGACGAAGGGTTCATTTGTC--TAAATGATTTGAAGGGTTCT 1380
|| ||| || ||||||| ||||| | ||| | | | |||| |||| || ||
Sbjct 1375 -GATATGATCGGACCAGAGAACGAAAGC--CATATAACGCTGCATGACCTGAAAGGCTC- 1430
Query 1381 AAA-CTTTCTGGAAATGTCTTCAACATACTTTTTAACCTCAACAAGTTTATGGCGTTTGA 1439
||| || |||||||| ||||||||||| |||||||| || ||||| |||||||| |||||
Sbjct 1431 AAAGCTCTCTGGAAACGTCTTCAACATCCTTTTTAATCTAAACAAATTTATGGCATTTGA 1490
Query 1440 AACGCGTGATCCCTTCCTCATCCGCCAGGAGCGCGCA-AATCCGACATGGACAGAGTGGG 1498
||| || ||||| |||||||| || |||||||| | | || || |||| |||||| ||||
Sbjct 1491 AACACGGGATCCGTTCCTCATTCGTCAGGAGCGTG-AGAACCCTACATTGACAGACTGGG 1549
Query 1499 ATCGTTTTGCTCATAGAGAATATATTAGGCTATCAATGGAAGAAGATGTCGAAGATGCTT 1558
| |||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||| |
Sbjct 1550 ACCGTTTTGCACATAGAGAGTATATTAGGCTTTCAATGGAAGAAGATGTTGAAGATGCAT 1609
Query 1559 CTAATGGAAGTGCTGAAGCATGGGACGA--C-TCACTTGAGG-TCCCCTTTTGAG 1609
| |||||||||||||| | ||||| || | ||||| |||| |||| || ||||
Sbjct 1610 CCAATGGAAGTGCTGAGGTTTGGGATGAGTCGTCACTGGAGGCTCCC-TTCTGAG 1663
> Ahg494587 jgi|Araly1|494587|fgenesh2_kg.8__403__AT5G44090.1
Length=1996
Score = 501 bits (271), Expect = 7e-141
Identities = 789/1033 (76%), Gaps = 60/1033 (6%)
Strand=Plus/Plus
Query 604 TATTGGGTTAAGGGAAATATGTTAACAAAGGA-GATAACAAGTCA-AGTATTTACAATA- 660
||||||||| | ||| ||||||| ||| ||| | || | ||| || || || ||||
Sbjct 775 TATTGGGTTGATGGACATATGTTGGCAATGGACG-TAGC--CTCACAG-ATATATAATAT 830
Query 661 TTGA-AGCAGCCAGATCACAACTACCTT-GTCCAGGATGATTTCAAGCCAGTGCTTCAAG 718
|| | |||||||| | ||| |||||| | |||| ||| ||||| ||||| ||| |||
Sbjct 831 TTTACGGCAGCCAGGTTGCAAGTACCTTAG-ACAGGCTGACTTCAAACCAGTTCTTGAAG 889
Query 719 A-ATTATTGGCAACACACCCTGGTCTT-GAATTCTTGCAAGG--CACACCGGAATTTCAG 774
| || || |||| || ||||| ||| |||||| | | ||| ||||| ||||||||
Sbjct 890 AGCTT-CTGACAACTCATCCTGG-CTTGGAATTCCT-C-AGGAATACACCTGAATTTCAA 945
Query 775 GATAGATATGCTGAAACTGTAATATACAGAATATATTACTACATAAATAGGAGT--GGAA 832
|| ||||||||||| || || || |||||||||| |||||||||||| | || | || |
Sbjct 946 GAAAGATATGCTGAGACCGTCATCTACAGAATATTTTACTACATAAACA-GA-TCAGGTA 1003
Query 833 ATGG--GCATCTTA-CCTTGAGAGAGCTTAAGCGAGGAAAT-TTAGTTGAC-GCAATGCA 887
||| ||| ||| |||| |||||||| ||||| || ||| ||| || || || |||||
Sbjct 1004 CTGGTTGCA--TTACCCTT-AGAGAGCTGAAGCGTGGGAATCTTA-TT-ACTGCCATGCA 1058
Query 888 GCATGCCGATGAAGAAGAGGACATCAAT-AAGGTGTTGAGGTACTTCTCGTATGAACATT 946
|| | ||||||||||| ||||||||| ||| | || ||||||||||| ||||| ||||
Sbjct 1059 ACAAGTTGATGAAGAAGACGACATCAATAAAGTTATT-AGGTACTTCTCCTATGAGCATT 1117
Query 947 TCTATGTCATATACTGCAAG-TTCTGGGAGTTGGAT-ACAGATCATGATTT-CTTAATCG 1003
|||| || ||||||||| || || ||||| | ||| | || |||||||| ||| || |
Sbjct 1118 TCTACGTTATATACTGC-AGATTTTGGGAACTCGATGGC-GACCATGATTTCCTT-ATTG 1174
Query 1004 ACAAAGAGAATCTCATCCGATATAGTAACCATGCGCTCACCTATAGGATTGTCGATC-GA 1062
| || || ||||||||| |||| |||| ||||| || ||||| ||||||||||| | ||
Sbjct 1175 ATAAGGAAAATCTCATCAAATATGGTAATCATGCACTTACCTACAGGATTGTCGA-CAGA 1233
Query 1063 ATCTTTTCACAGGTACCGAGGAAGTTTACTAGTAAAACCGAAGGAAAGATGGGTTATGAG 1122
|| ||||||||||| || ||||| ||||| || ||| || || |||||| |||||||
Sbjct 1234 ATATTTTCACAGGTCCCTAGGAAATTTACAAGCAAAGTTGAGGGGAAGATGAGTTATGAA 1293
Query 1123 GATTTTGTTTACTTCATAT-TGGCTGAAGAAGACAAGTCATCAGAACCTAGTCTTGAGTA 1181
||||||| |||||||| | | ||||| || || |||||||| || ||||||||||||||
Sbjct 1294 GATTTTGCATACTTCAT-TCTCGCTGAGGAGGATAAGTCATCTGAGCCTAGTCTTGAGTA 1352
Query 1182 TTGGTTCAAGTGCATTGATTTGGATGCAAATGGAGTTTTGACGCGGAACGAGCTGCAATT 1241
||||||||||||||| || |||||| | |||| || | || | ||||| |||| ||
Sbjct 1353 TTGGTTCAAGTGCATAGACCTGGATGGAGATGGGGTGATCACTCCCAACGAAATGCAGTT 1412
Query 1242 CTTT-TACGAGGAGCAGCTACATAGAATGGAATGCATGGCGCAAGAGGCGGTGTTGTTTG 1300
||| ||||| |||||||| ||| | |||||||| || | || || | || | ||||
Sbjct 1413 -TTTCTACGAAGAGCAGCTGCATCGCATGGAATGTATAACTCAGGAACCTGTACTCTTTG 1471
Query 1301 AGGATATTTTGTGCCAATTATTCGACATGGTCAAACCAGAGGACGAAGGGTT-CATTTGT 1359
| ||||| | || ||| ||||||||||| | ||||||||| | || | | |||
Sbjct 1472 AAGATATCCTATGTCAAATATTCGACATGATTAAACCAGAGAAGGA-GAACTGCATCACA 1530
Query 1360 CTAAATGATTTGAAGGGTTCTAAACTTTCTGGAAATGTCTTCAACATACTTTTTAACCTC 1419
|| | ||| |||| | |||||||||||||||||| | ||||| ||||| || |||||
Sbjct 1531 CTCCAGGATCTGAAAGCATCTAAACTTTCTGGAAATATTTTCAATATACTCTTCAACCTG 1590
Query 1420 AACAAGTTTATGGCGTTTGAAACGCGTGATCCCTTC-CTCATCCGCCAGGAGCGCGCA-A 1477
||||| || ||||| |||||||| ||||| ||||| ||||| |||||||| || | | |
Sbjct 1591 AACAAATTCATGGCTTTTGAAACCCGTGA-CCCTTTTCTCATTCGCCAGGAACGTG-AGA 1648
Query 1478 ATCCGACATGGACAGAGTGGGATCGTTTTGCTCATAGAGAATATATTAGGCTATCAATGG 1537
|||| |||| ||| || ||||| || |||||||| ||||| ||| | ||| | |||||||
Sbjct 1649 ATCCAACATTGACGGAATGGGACCGATTTGCTCAGAGAGAGTATGTGAGGTTGTCAATGG 1708
Query 1538 AAGAAGATGTCGAAGATG-CTTCTAATGGAAGTGCTGAAG-CATGGGACGA-CTCACTTG 1594
| |||||||| || || | || | ||||| ||||| || | | ||||| || | |||| |
Sbjct 1709 AGGAAGATGTGGAGGAAGTCT-CGAATGGGAGTGCAGATGTC-TGGGATGAAC-CACTCG 1765
Query 1595 AGGTCCCC-TTTT 1606
|| || || ||||
Sbjct 1766 AG-TCTCCATTTT 1777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69019523940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5