BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54460.1
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337736 jgi|Araly1|337736|fgenesh1_pg.C_scaffold_1004301 1155 0.0
> Ahg337736 jgi|Araly1|337736|fgenesh1_pg.C_scaffold_1004301
Length=1056
Score = 1155 bits (625), Expect = 0.0
Identities = 756/818 (92%), Gaps = 14/818 (2%)
Strand=Plus/Plus
Query 348 ATCTTCTGTTAAACCTCGTGTTACTGCGAAAACAACTGTTCCAAAGCCGTTTTCCCTGTC 407
|||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 237 ATCTTCAGTTAAAACTCGTGTTACTGCGAAAACAACTGTTCCAAAGCCGTTTTCTCTGTC 296
Query 408 GGCTGAAAAGCCTAGAAGAGCAGCGGTTGATAATAATTCATTAGGAAATGGTGCTAGCCA 467
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 297 GGCTGAAAAGCCTAGAAGAGCAGTAGTTGATAATAATTCATTAGGAAATGGTGCTAGCCA 356
Query 468 TAACTCTTCTTCAGCATCAAGAGTTTCACAGCTAAACTCTCCTTTACCAACTAGGAGGAT 527
|||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||
Sbjct 357 TAACTCTTCTTCAGCATCAAGAGTTTCACAGCTAAATTCTCCTCTACCAGCTAGGAGGAC 416
Query 528 ACCAGATCATAAGATGCACCATGATGAAGAAGATAGTTTTTCTGTTGCTTCCTCATCAGC 587
||||||||| |||| || ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 417 ACCAGATCACAAGAAACATCATGATGAAGAAGATAGTTTTTCCGTTGCTTCCTCATCGGC 476
Query 588 TACATCCATAAGAAGTTTTAAACCCAAGATAACGATTGGAGTTGCTCCAACATTTAGTAG 647
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 477 TACATCCATAAGAAGTTTTAAACCCAAGATAACGGTTGGAGTTGCTCCAACATTTAGTAG 536
Query 648 CACATCGCGACTGGAGAGACGAAGAGAGTTTTACCagaagttagaggaaaaacagaaagc 707
|||| |||| |||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 537 CACAGCGCGGCTGGAGAGGCGGAGAGAGTTTTACCAGAAGTTAGAGGAGAAACAGAAAGC 596
Query 708 acttgaagcagagaaaagagaaaacgagaaaaggcttaaggaagagcaagaAGCAGTCAC 767
|||||| |||||||||| ||| |||||||||||||| |||||||||||||||||||||||
Sbjct 597 ACTTGAGGCAGAGAAAATAGAGAACGAGAAAAGGCTCAAGGAAGAGCAAGAAGCAGTCAC 656
Query 768 TAAGCAACTTAGGAAGAACATGGCTTACAAAGCTAATCCGGTACCAAGTTTCTACCAAGA 827
||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TAAACAACTCAGGAGGAACATGGCTTACAAAGCTAATCCGGTACCAAGTTTCTACCAAGA 716
Query 828 GGGTCCTCCACCGAAACAACCATTGAAAAAGTTTCCATTGACTCGGCCTAAGTCACCAAA 887
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 717 GGGTCCTCCACCGAAACAACCGTTGAAAAAGTTTCCACTGACTCGGCCTAAGTCACCAAA 776
Query 888 CCTTAACCGTAGAAAGAGCTGCAGCGACACAGTTAACGCATCATATCAGGAAGTGAAGGG 947
||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 777 CCTCAACCGTAGAAAGAGCTGCAGTGACACAGTTAACGCATCATATCAGGAGGTGAAGGG 836
Query 948 GAAGCATTGTGCTCGACATCGTCACAGTGTAGGTGGTTGCAAGGATGAAGTCAAAACGAA 1007
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 837 GAAGCATTGTGCTCGACATCGTCACAGTGTAGGTGGTTGCAAGGAAGAACCCAAAACGAA 896
Query 1008 CAGTGTCCCAAGGACACCAAATAGCAGCAGCAAAGATCAGATGAGAAAGTCCAAAAAGGG 1067
||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||
Sbjct 897 CAGTGTCCCAAGGACACCAAATAGCAGCAGCAAAGATCATATGAAAAAGTCCACAAAGGA 956
Query 1068 AACACCAAAGTCTGAAGAAGTACATG-AAATG-TT-T---AATA-----G--TGGCCATG 1114
||||||||| ||||||||||| |||| ||| | || | || | | ||| ||||
Sbjct 957 AACACCAAAATCTGAAGAAGTGCATGGAAA-GCTTGTGGGAAAAAACAAGAGTGGTCATG 1015
Query 1115 ATGGAGAGACTGGTGAGAATGGCGTTGGTGTTGTGGAG 1152
|||||||||| | ||||||||| |||| ||||||||||
Sbjct 1016 ATGGAGAGACAGATGAGAATGGTGTTGTTGTTGTGGAG 1053
Score = 276 bits (149), Expect = 4e-73
Identities = 197/220 (90%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 142 ATGGGGAGAGAACTTGTAGACAAACACATGGATAAGAAAGCGAATAGTTTGACAGCTAGC 201
|||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 1 ATGGGGAGAGAACTTGTAGACAAACACATGAATAAGAAGGCAAATAGTTTGACAGCTAGC 60
Query 202 TCGACGGGATCTTCAGATGATAATAAAGTCCCAAGTCCGTCTACTA-ATGAAGCTGCAGA 260
|| || |||||||| |||||||||||||||| |||||| || |||| | |||||||| ||
Sbjct 61 TCAACCGGATCTTCGGATGATAATAAAGTCCGAAGTCCTTCGACTATA-GAAGCTGCGGA 119
Query 261 GGTGAAAGAATGCACCGAGCAGAATTTGGTTGCGGATGATGCTCGTTTGAGGCAACAAGG 320
||||||||||||||| |||||||| ||||||||||||||||||||| |||||| || ||
Sbjct 120 GGTGAAAGAATGCACTGAGCAGAACTTGGTTGCGGATGATGCTCGTATGAGGCCACTAGA 179
Query 321 GATAACTGAGACACCTGGATCCCATAAA-TCTTCTGTTAA 359
||||| ||| |||||||||||||||||| | ||||| |||
Sbjct 180 GATAATTGATACACCTGGATCCCATAAAAT-TTCTGATAA 218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54811862555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5