BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54470.2
Length=3074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474723 jgi|Araly1|474723|fgenesh2_kg.1__4677__AT1G54470.1 2215 0.0
Ahg481398 jgi|Araly1|481398|fgenesh2_kg.4__458__AT2G25470.1 599 4e-170
Ahg924200 jgi|Araly1|924200|scaffold_105481.1 411 2e-113
> Ahg474723 jgi|Araly1|474723|fgenesh2_kg.1__4677__AT1G54470.1
Length=2861
Score = 2215 bits (1199), Expect = 0.0
Identities = 1525/1682 (91%), Gaps = 23/1682 (1%)
Strand=Plus/Plus
Query 1269 CTACAATAGTGCATGAGTTGCAGTTCTTGGATTTTTCAGTGAATGATATTAGTGGACTGC 1328
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 CTACAATAGTGCATAATTTGCAGTTCTTGGATTTTTCAGTGAATGATATTAGTGGACTGC 1177
Query 1329 TCCCTGATAATATCGGTTATGCGCTTCCGAATCTGTTACGAATGAACGGCTCAAGA-AAT 1387
||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | |||
Sbjct 1178 TCCCTGATAATATCGGTCATGCGCTTCCGAATCTGGTACGAATGAACGGCTCAA-ATAAT 1236
Query 1388 GGGTTTCAAGGGCATTTACCATCTTCTATGGGTGAGATGGTAAACATTACATCCCTTG-A 1446
||||||||||| |||||||||||||| ||||||||||||||||| ||||||| | ||| |
Sbjct 1237 GGGTTTCAAGGTCATTTACCATCTTCAATGGGTGAGATGGTAAATATTACATTC-TTGGA 1295
Query 1447 TCTATCTTATAATAACTTCTCCGGGAAGCT-ACCTAGACGCTTTGTCACTGG-TTGTTTT 1504
|||||||||||||||||||| ||||| || ||||||| ||||||||| ||| |||||||
Sbjct 1296 TCTATCTTATAATAACTTCTATGGGAA-CTTACCTAGAAGCTTTGTCA-TGGGTTGTTTT 1353
Query 1505 TCACTAAAACACTTGAAGCTCTCCCACAACAATTTTAGTGGCCATTTTCTTCCAAGAGAA 1564
|||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 1354 TCACTAAAACACTTAAAGCTTTCTCACAACAAATTTAGTGGCCATTTTCTTCCAAGAGAA 1413
Query 1565 ACAAGCTTTACTTCCCTGGAAGAGTTGAGAGTTGATAGCAACTCATTCACTGGGAAGATC 1624
|||||||| |||||| ||||||| |||||| | |||||||||| ||| |||||||||||
Sbjct 1414 ACAAGCTTCACTTCCATGGAAGAATTGAGAATGGATAGCAACTTATTTACTGGGAAGATT 1473
Query 1625 GGAGTTGGTTTGCTTAGCTCCAACACTACGTTATCAGTTCTTGACATGTCCAACAATTTT 1684
||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||||||
Sbjct 1474 GGAGTTGGTTTGCTTAGCTCCAACAATACATTGTCAATTCTTGACATGTCCAACAATTTT 1533
Query 1685 CTAACGGGTGATATTCCAAGCTGGATGTCTAACTTATCTGGTTTAACTATCTTGTCGATA 1744
|| |||||| |||| ||||| |||||| ||||||||||| ||||| ||| || ||||||
Sbjct 1534 CTCACGGGTAATATCCCAAGTTGGATGGCTAACTTATCTTCTTTAAATATGTTCTCGATA 1593
Query 1745 TCAAACAATTTTTTAGAAGGTACGATACCACCATCTTTGCTAGCCATTGGCTTTCTTTCT 1804
||||||||||| ||||||||||| ||||||||||||||| | |||||| ||||||||||
Sbjct 1594 TCAAACAATTTCTTAGAAGGTACAATACCACCATCTTTGTTGGCCATTAGCTTTCTTTCG 1653
Query 1805 CTCATCGACCTATCGGGAAACTTATTATCTGGATCCTTACCGTCACGTGTTGGTGGGGAG 1864
|| || |||||||| |||||| | ||||||||| |||||||||||| |||||||||||||
Sbjct 1654 CTTATTGACCTATCTGGAAACATCTTATCTGGAGCCTTACCGTCACATGTTGGTGGGGAG 1713
Query 1865 TTTGGGATAAAATTGTTCCTACACGACAACATGCTCACGGGGCCGATTCCAGACACGTTG 1924
||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||| ||
Sbjct 1714 TTTGGGATAAAATTGTTCCTACATGACAACAACCTCACAGGGCCGATTCCAGACACGCTG 1773
Query 1925 TTGGAAAAGGTCCAAATACTTGATTTACGGTACAATCAACTTTCTGGGAGTATTCCACAA 1984
|||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||| |||
Sbjct 1774 TTGGAAAAAGTCCAAATACTTGATCTACGATACAATAAACTTTCTGGGAGTATTCCGCAA 1833
Query 1985 TTTGTCAATACCGAGAGCATATATATTCTTTTAATGAAGGGAAACAACTTAACAGGATCT 2044
|||||||||||| ||||||||| |||||||||| ||| |||||| || ||||||||| ||
Sbjct 1834 TTTGTCAATACCCAGAGCATATTTATTCTTTTATTGAGGGGAAATAATTTAACAGGACCT 1893
Query 2045 ATGTCAAGG-CAGCTCTGTGATTTGAGAAATATCAGACTTTTAGATCTTTCAGATAACAA 2103
|| ||||| || || ||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1894 ATCTCAAGTACA-CTTTGTCATTTGAGAAAAATCAGACTTTTAGATCTTTCAGATAACAA 1952
Query 2104 GCTCAATGGCTTCATACCTTCATGTCTA-TATAATTTATCATTTGGACCAGAGGATACAA 2162
|||||||||||||||||||||||| || ||||||||||||||||||| ||| |||||||
Sbjct 1953 GCTCAATGGCTTCATACCTTCATG-CTTGTATAATTTATCATTTGGACGAGAAGATACAA 2011
Query 2163 ATT-CAT-ATGTAGGTACAGCCATAACGAAGATTACTCCGTTCAAGTTTTACGAATCCAC 2220
||| ||| || |||| |||||||| ||||||||||||||||||| ||||| ||||||||
Sbjct 2012 ATTTCATGAT--AGGTCCAGCCATATCGAAGATTACTCCGTTCAAATTTTATGAATCCAC 2069
Query 2221 ATTTGTGGTAGAGGATTTTGTGGTAATATCCTCTAGTTTTCAAGAAATTGAAATCAAATT 2280
||||||||||||||| || |||||||| || |||| ||| |||| |||||||||||||||
Sbjct 2070 ATTTGTGGTAGAGGAGTTCGTGGTAATGTCTTCTACTTTGCAAGGAATTGAAATCAAATT 2129
Query 2281 TTCAATGAAGCGAAGGTATGATTCTTATTTTGGAGCAACTGAATTCAACAATGACGTACT 2340
||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 2130 TTCAACAAAGCGAAGGTATGATTCTTATTTTGGAGCAACTGAGTTCAACAATTACGTACT 2189
Query 2341 TGATTATATGTATGGAATGGACCTATCAAGCAATGAGTTAAGTGGGGTTATCCCAGCAGA 2400
||||||||||||||| |||| || ||||||||||| |||||||| ||||||||||||||
Sbjct 2190 TGATTATATGTATGGGTTGGATCTGTCAAGCAATGAATTAAGTGGTGTTATCCCAGCAGA 2249
Query 2401 GCTTGGA-AGTCTCTCAAAGCTACGAGTCATGAATTTATCTTGCAACTTCTTGTCCAGTT 2459
||||||| | ||||||||| ||||||||||||||||||||| ||||||||||||| ||||
Sbjct 2250 GCTTGGAGA-TCTCTCAAAACTACGAGTCATGAATTTATCTCGCAACTTCTTGTCGAGTT 2308
Query 2460 CAATACCATCTAGCTTCTCCAATCTCAAGGATATTGAGAGCCTTGACCTTTCGCATAACA 2519
| |||||| | | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2309 CTATACCACCCAACTTCTCCAATCTGAAGGATATTGAGAGCCTTGACCTTTCGCATAACA 2368
Query 2520 TGTTACAAGGAAGTATTCCTCAACAA-CTAACCAACCTTTCTTCTCTTGTTGTCTTTGAT 2578
|||||||||||| |||||||| | | |||||||||||||||||||||||||| ||||||
Sbjct 2369 AGTTACAAGGAAGAATTCCTCA-CGAGCTAACCAACCTTTCTTCTCTTGTTGTTTTTGAT 2427
Query 2579 GTGTCTTACAATAATTTATCCGGAATCATTCCCCAAGGAAGGCAGTTTAATACCTTTGAC 2638
|||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct 2428 GTGTCTTACAATAATTTATCTGGAATCATTCCCCAAGGCAGGCAATTTAATACCTTTGAC 2487
Query 2639 GAGAAAAGCTACTTGGGAAATCCTCTTCTTTGTGGACCACCGACCAATAGAAGTTGTGAT 2698
||||| ||||||| ||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 2488 GAGAATAGCTACTCGGGAAATTCTCTTCTATGTGGACCACCGACCAATAGAAGTTGTGAG 2547
Query 2699 GCTAAGAAGACCTCAGATGAATCAGAAAATGGAGGAGAAGAAGAAGATG---ATGAAGCT 2755
|||||||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2548 GCTAAGAAGAGCTCAGAGGAATCAGAAAATGGAGGAGGAGAAGAAGATGTTGATGAAGCT 2607
Query 2756 CCTGTTGATATGTTGGCCTTCTATTTTAGTAGTGCTTCGACTTATGTAACTACATTGATA 2815
||| |||| |||||||||||||||||||||| |||||| ||||||||||| |||||||
Sbjct 2608 CCTATTGACATGTTGGCCTTCTATTTTAGTACTGCTTCAACTTATGTAACCGTATTGATA 2667
Query 2816 GGCATTTTTATACTTATGTGCTTTGATTGTCCTTTGCGTCGAGCATGGCTCCGCATTGTC 2875
|||||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 2668 GGCATTATGATACTTATGAGCTTTGATTGTCCTTTGCGTCGAGCATGGCTTCGCATTGTC 2727
Query 2876 GATGCTTCCATCGCCTCAGTCAAAAGTATGTTGCCTTAAAATCATTTCACTTCAGTTTTT 2935
|||| ||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||
Sbjct 2728 GATGATTCCATCGCCTCAGTCAAAGGTATGTTGCCTTAAAGTCATCTCACTTCAGTTTTT 2787
Query 2936 AC 2937
||
Sbjct 2788 AC 2789
Score = 1247 bits (675), Expect = 0.0
Identities = 841/921 (91%), Gaps = 11/921 (1%)
Strand=Plus/Plus
Query 345 GGAAGCGTTTCTTGGGCCAATACTTGATATGGGTGAT-ATTATTGTTGGGGCAGCTCCAT 403
|||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1 GGAAGCGTTTCTTGGGACAATACTTGATATGGGTGATGA-TATTGTTGGGGCAGCTCCAT 59
Query 404 GAATGCAAAAGCTGCATTGAGAAAGAAAGAGTAGCTTTGTTGGATTTTAAGAAATATTGG 463
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 60 GAATGCAAAAGCTGCATTGAGAAAGAAAGAATAGCTTTGTTGGATTTGAAGAAATATTGG 119
Query 464 ATGTCCATTACGCAAGAATCGGACTTGGACTATGTTTTCCCTACTTGGAATAATGACACA 523
||||| || || ||||||||||| ||||||||||||||||| ||||||| ||||||||||
Sbjct 120 ATGTCAATGACACAAGAATCGGAATTGGACTATGTTTTCCCCACTTGGACTAATGACACA 179
Query 524 AAGAGCGATTGTTGCC-AGTGGGAGAGCATTATGTGCAATCCTACAAGTGGGCGGCTTAT 582
||||||||||| ||| | |||||| ||||| ||||||||| |||||| || ||| | ||
Sbjct 180 AAGAGCGATTGCTGCATA-TGGGAGGGCATTGTGTGCAATCGTACAAGCGGACGGGTGAT 238
Query 583 CAGGCTTCACGTTGGTGCTTCGAATTTAAAAGAGAATTCTCTACTAAATATTTCTTTACT 642
|| ||| | ||||| ||| | ||||||||||||||||||| |||||| ||||||| ||
Sbjct 239 CAAACTTTATATTGGTTCTTTGGATTTAAAAGAGAATTCTCTCCTAAATCTTTCTTTGCT 298
Query 643 GCATCCCTTTGAAGAGGTTCGAAGTCTAGAATTATCAGCTGGGCTCAATGGCTTCGTTGA 702
||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||
Sbjct 299 GCATCCCTTTGAAGAGGTTCGAAGTCTGGAATTATCATCAGGGCTCAATGGCTTCGTTGA 358
Query 703 TAATGTTGAAGGTTATAAAAGCTTAAGGAAATTAAAAAATTTGGAGATTCTGGATCTCTC 762
|||| |||||||||||||||| ||||||||||||| ||| |||||||| ||||||||||
Sbjct 359 TAATATTGAAGGTTATAAAAGTTTAAGGAAATTAAGAAACCTGGAGATTATGGATCTCTC 418
Query 763 TTATAATAATAGATTCAACAACAACATACTTCCATTTATTAATGCTGCTACGTCACTTAC 822
|||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 419 TTATAATA---GATTCAACAACAACATACTTCCATTTCTTAATGCTGCTACGTCGCTTAC 475
Query 823 AAGCCTTTCTCTTCAAAATAACTCCATGGAAGGCCCTTTCCCTTTTGAAGAAATAAAAGA 882
||| ||||||||| | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 476 AAGTCTTTCTCTTGAGAATAACGACATGGAAGGCCCTTTCCCTTTTGAAGAAATAAAAGA 535
Query 883 CTTGACAAACTTGAAACTA-TTGGATCTTAGTAGAAACATACTAAAAGGCCCCATGCAAG 941
||||||||||||| ||| | ||||||||||||||||||| |||| | |||||||||||||
Sbjct 536 CTTGACAAACTTGCAAC-AGTTGGATCTTAGTAGAAACAGACTAGACGGCCCCATGCAAG 594
Query 942 GGTTGACTCATCTGAAAAAGCTAAAAGCTTTGGATCTAAGTAACAATGTTTTTTCGAGCA 1001
||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||
Sbjct 595 GGTTGACTCATCTGAAAAACCTAAAAGCTTTGGATCTAAGTAGCAATGTTTTTTCTAGCA 654
Query 1002 TAATGGAATTGCAAGTAGTTTGTGAAATGAAGAATTTGTGGGAGCTTGATCTTCGTGAAA 1061
|||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||
Sbjct 655 TAATGGAATTGCAAGTAGTTTGTGAATTGAAGAATTTGTGGGAGCTCGATCTACGTGAAA 714
Query 1062 A-TAAATTTGTAGGTCAGCTTCCTCTTTGTTTAGGTAGATTAAACAAGCTAAGGGTTCTT 1120
| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 715 ACTAT-TTTGTAGGTCAGCTTCCTCTTTGTTTAGGAAGATTAAACAAGCTAAGGGTTCTT 773
Query 1121 GATTTGTCATCCAACCAGCTAAATGGAAATCTACCATCTACTTTCAACAGACTCGAGTCC 1180
|| || |||||||||||||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 774 GACTTCTCATCCAACCAGCTAAATGGAAATCTACCATCTAGTTTCAACAGCCTTGAGTCC 833
Query 1181 CTTGAATATCTATCATTATTAGATAACAACTTCACCGGCTTCTTCTCATTTGATCCACTC 1240
|||||||||||||| || ||||||||||| ||||| |||| |||||||| |||||||||
Sbjct 834 CTTGAATATCTATCGTTGTTAGATAACAATTTCACAAGCTTATTCTCATTCGATCCACTC 893
Query 1241 GCCAACCTCACAAAGCTTAAG 1261
|||||||||||||||||||||
Sbjct 894 GCCAACCTCACAAAGCTTAAG 914
> Ahg481398 jgi|Araly1|481398|fgenesh2_kg.4__458__AT2G25470.1
Length=2733
Score = 599 bits (324), Expect = 4e-170
Identities = 553/663 (83%), Gaps = 18/663 (3%)
Strand=Plus/Plus
Query 2260 TCAAGAAATTGAAATCAAATTTTCAATGAAGCGAAGGTATGATTCTTATTTTGG-AGCAA 2318
|||||||| ||| ||||||||| || ||||| |||||||||||||||| ||| || |
Sbjct 2079 TCAAGAAACTGAGATCAAATTTGCAGCGAAGCAAAGGTATGATTCTTATAGTGGAAG-AT 2137
Query 2319 CTGAATTCAAC-AATGACGTACTT-GAT-TATATGTATGGAATGGACCTATCAAGCAAT- 2374
|||| |||| | || || | ||| | | | |||||| || ||||| || |||| ||||
Sbjct 2138 CTGAGTTCAGCGAAGGA-ATTCTTCG-TCT-TATGTACGGGATGGATCTGTCAAACAATG 2194
Query 2375 GAGTTAAGTGGGGTTATCCCAGCAGAGCTTGGAAGTCTC-TCAAAGCTACGAGTCATGAA 2433
|| |||||||| ||||||||| ||||||||||| ||||| | ||| ||| || | ||||
Sbjct 2195 GA-TTAAGTGGTGTTATCCCAACAGAGCTTGGAGGTCTCTTGAAA-CTAAGAACCTTGAA 2252
Query 2434 TTTATCTTGCAACTTCTTGTCCAGTTCAATACCATCTAGCTTCTCCAATCTCAAGGATAT 2493
| | ||| ||| |||||||| ||||| ||||||| |||||||||||| || | ||||||
Sbjct 2253 TCTGTCTCACAATTTCTTGTCGAGTTCTATACCATTTAGCTTCTCCAAACTGAGGGATAT 2312
Query 2494 TGAGAGCCTTGACCTTTCGCATAACATGTTACAAGGAAGTATTCCTCAACAACTAACCAA 2553
|||||||||||| ||||| ||||||||||| |||||||| |||||||||||||| ||||
Sbjct 2313 TGAGAGCCTTGATCTTTCTCATAACATGTTGCAAGGAAGCATTCCTCAACAACTTACCAG 2372
Query 2554 CCTTTCTTCTCTTGTTGTCTTTGATGTGTCTTACAATAATTTATCCGGAATCATTCCCCA 2613
|||| ||||||||| ||| || || ||||||||||| || |||| ||||||||||||||
Sbjct 2373 CCTTACTTCTCTTGCTGTGTTCGACGTGTCTTACAACAACTTATTAGGAATCATTCCCCA 2432
Query 2614 AGGAAGGCAGTTTAATACCTTTGACGAGAAAAGCTACTTGGGAAATCCTCTTCTTTGTGG 2673
||||||||| ||| | |||||||| ||| | |||||||| || |||||||| ||||||||
Sbjct 2433 AGGAAGGCAATTTGACACCTTTGAAGAGGACAGCTACTTAGGTAATCCTCTGCTTTGTGG 2492
Query 2674 ACCACCGACCAATAGAAGTTGTGATG-CTAAGAAGACCT-CAGATGAATCAGAAAATGGA 2731
||||||||||| ||||| |||||| | ||||||| | | |||| ||| |||| ||||||
Sbjct 2493 ACCACCGACCAGTAGAAATTGTGA-GACTAAGAA-AAGTCCAGAGGAAGCAGATAATGGA 2550
Query 2732 GGAGAAGAAGAAGATGATGAAGCTCCTGTTGATATGTTGGCCTTCTATTTTAGTAGTGC- 2790
|||||||||||||||||||||||| || | || ||| ||| ||||||||||||| |||
Sbjct 2551 GGAGAAGAAGAAGATGATGAAGCTGCTATCGACATGGTGGTGTTCTATTTTAGTACTGCA 2610
Query 2791 TTCGACTTATGTAACTACATTGATAGGCATTTTTATACTTATGTGCTTTGATTGTCCTTT 2850
|| |||||||| || |||||||||| ||| || |||||||||||||||||||| |||
Sbjct 2611 TTA-ACTTATGTGACCGCATTGATAGGTATTCTTGTACTTATGTGCTTTGATTGTTCTTG 2669
Query 2851 GCGTCGAGCATGGCTCCGCATTGTCGATGCTTCCATCGCCTCAGTCAAAAGTATGTTGCC 2910
||||||||||||||||||||||||||||| |||||||| | | || |||| |||||||||
Sbjct 2670 GCGTCGAGCATGGCTCCGCATTGTCGATGGTTCCATCGTCGCTGTGAAAAATATGTTGCC 2729
Query 2911 TTA 2913
|||
Sbjct 2730 TTA 2732
> Ahg924200 jgi|Araly1|924200|scaffold_105481.1
Length=380
Score = 411 bits (222), Expect = 2e-113
Identities = 295/330 (89%), Gaps = 6/330 (2%)
Strand=Plus/Plus
Query 16 TTTCAAGCTTTCAGACAAAAACAAAATGAAGACTAATTTTGTTATTCTACTTCTTCTCCT 75
||| |||||||||||| ||||| ||||| ||||| |||||| || | |||||||||||
Sbjct 1 TTT-AAGCTTTCAGAC-AAAAC--AATGACGACTACTTTTGTCCTTTTTCTTCTTCTCCT 56
Query 76 CTGTGTTTTTGCGATCAGCCCTAGTCAACAAGAAGAGATCAATCAACATAATCCAGGGAT 135
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 57 CTGTGTTTTTGCGATCAACCCTAGTCAACAAGAAGAGATCAATCAACAGAATCCAGGGAT 116
Query 136 ATATCATCAAAAGCTGCTATACAAGGTCCAACAATGGAGAACATCTTTGAAAGAATCAAA 195
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 117 ATATCATCAAAAGTTGCTATACAAGGTCCAACAATGGAGAACAGCTTTGAAAGAATCAAA 176
Query 196 TTCTGTAGAACTCAAGCTATCTTTAGCAGCCATTGTGGCTGGAGTGTTATACTTCCTTGC 255
| ||| |||||||||| |||||| |||| |||||| | ||||| ||||| ||||||||
Sbjct 177 TGCTGCAGAACTCAAGATATCTTCAGCAATCATTGTAGTTGGAGGGTTATGCTTCCTTGT 236
Query 256 TGCCTTAATCTCGAGCGCATGTGGAATCGGCAGTGGAGGTTTATTCATTCCAATCACGAC 315
|||||| |||||||||||||||| ||||||| || |||||||||| |||||||||| |||
Sbjct 237 TGCCTTGATCTCGAGCGCATGTGTAATCGGCGGTAGAGGTTTATTTATTCCAATCATGAC 296
Query 316 T-CTAGTTTCACGGCTAGACTTGAAAACAG 344
| | || | |||||||||||||||||||||
Sbjct 297 TAC-AGCTGCACGGCTAGACTTGAAAACAG 325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116099066760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5