BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54500.1
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474725 jgi|Araly1|474725|fgenesh2_kg.1__4679__AT1G54500.1 1075 0.0
> Ahg474725 jgi|Araly1|474725|fgenesh2_kg.1__4679__AT1G54500.1
Length=708
Score = 1075 bits (582), Expect = 0.0
Identities = 667/709 (94%), Gaps = 2/709 (0%)
Strand=Plus/Plus
Query 1 ACAATGCTTTTCAAAAATCTTATCCAAGCATAAGTCTCCTTGGTACCTCTCCTCTCCAAT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 1 ACAATGCTTTTCAAAAATCTTATCCAAGCATAAGTCTCCTTCGTACCTCTCGTCTCCGAT 60
Query 61 GGATCATCCGTCTCTAACAATGACCAAACTCCGAAATTATAAGAAGTAAAGACAACCATG 120
||||| | | ||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 61 GGATCCTTCTTCTCTAACAATGACCAAACTCAGAAATTATAAGAAGTAAAGACAATCATG 120
Query 121 GCGAGTGCTACCTTCTCCTTCTGTCCC-CTCTCTCAATCCCATCCCCATTCTTCTCTAAT 179
||||||||||||||||||||||| ||| ||||||||||||||| |||||| |||||| ||
Sbjct 121 GCGAGTGCTACCTTCTCCTTCTG-CCCTCTCTCTCAATCCCATTCCCATTATTCTCTCAT 179
Query 180 CAAACCGACACCGTTTCTCAGATATGGCAAGAAACTACACCATCTTCACCACCACATCTT 239
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 180 CAAACCGACGCCGTTTCTCAGATATGGCAAGAAACTACACCATCTCCACCACCACCTCTT 239
Query 240 CATCACCATCTCTTACCCATCTCACCATTCTCGCTACTTGGCCGTTTCAAGAGACGATGC 299
||||||||||||||||||| |||| |||||||| ||| | || || ||||||||||||||
Sbjct 240 CATCACCATCTCTTACCCAACTCAACATTCTCGTTACCTCGCTGTCTCAAGAGACGATGC 299
Query 300 CGCGACGCCTCTTTCTTCTTCCGACCAAACCCAAGAGACAGAGACCAAAGAAGTGGAAGA 359
| ||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 300 CACGACGCCTCTTGCTTCATCCGACCAAACCCAAGAAACAGAGACCAAAGAAGTTGAAGA 359
Query 360 CACTATAGAGAAACGAAGAATGGAGGAGAAGTTTGCTGTTCTAAACACTGGAATCTATGA 419
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 360 TACTATAGAGAAACGAAGAATGGAGGAGAAGTTTGCAGTTCTAAACACTGGGATCTATGA 419
Query 420 GTGTAGATCATGTGGTTACAAGTACGATGAATCAGCGGGTGACCCATCGTACCCGATTCC 479
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 GTGTAGATCGTGTGGTTACAAGTACGATGAATCAGCAGGTGACCCATCGTACCCGATTCC 479
Query 480 ACCGGGTTTTCAGTTTGATAAGTTGCCTGAAGATTGGAGATGTCCTACTTGTGGAGCTGC 539
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 ACCGGGTTTTCAGTTTGATAAGTTGCCTGAAGATTGGAGATGTCCAACTTGTGGAGCTGC 539
Query 540 TCAGAGTTTCTTTGAGAGTAAAATGGTTGAGATTGCTGGTTTTGCTCAGAATCAGCAATA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCAGAGTTTCTTTGAGAGTAAAATGGTTGAGATTGCTGGTTTTGCTCAGAATCAGCAATA 599
Query 600 TGGACTTGGTGGTAATGCTCTTACCTCTGGTCAGAAGACTGGTTTAATCTTTGGCTCTCT 659
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 TGGACTTGGTGGTAATGCTCTTACTTCTGGTCAGAAGACTGGTTTAATCTTTGGCTCTCT 659
Query 660 TTTACTCTTCTTTGCGCtttttttGAGTGGCTATTTCATTCAATGATTA 708
||||||||||| |||||||||||| ||||||||||| |||| ||||
Sbjct 660 CTTACTCTTCTTCATGCTTTTTTTGAGCGGCTATTTCATCCAATAATTA 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30879562770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5