BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54520.1
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474728 jgi|Araly1|474728|fgenesh2_kg.1__4682__AT1G54520.1 2015 0.0
> Ahg474728 jgi|Araly1|474728|fgenesh2_kg.1__4682__AT1G54520.1
Length=1373
Score = 2015 bits (1091), Expect = 0.0
Identities = 1232/1299 (95%), Gaps = 14/1299 (1%)
Strand=Plus/Plus
Query 64 TCACCACATAAACCCTAGCGATCGATTTCTCCAGAAATCAACCAACAATCGTTCATGGCG 123
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 23 TCACCACATAAACCCTAGCGATCGATTTCTCCAGAAATCAACCAACAATCGTCCATGGCG 82
Query 124 TCTTCTTCCACCTTTCTGGAATTAACTCCATTTCAATGGAATCAACCTCTCCCATACACA 183
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 83 TCTTCTTCTACCTTTCTGGAATTAACTCCATTTCAATGGAATCAACCTCTTCCATACA-T 141
Query 184 CAA-CGACCCCATCATCGTACTGTTCTTCTCTACTCCAAACCTCAAAGGAGATCAAATTC 242
|| |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct 142 GAACCGACCCCATCATCGTAGTGTTCTTCTCTACGCCAAACCTCAACGGAGATCAAATTC 201
Query 243 GATTCGTCTCCAAATCTCCGTCAAATACAAGCAATCAACATCTTCTTCAGATCCAGATTT 302
||||||||||||||||||||||||||||| ||||| | | ||||||| |||||||
Sbjct 202 TATTCGTCTCCAAATCTCCGTCAAATACAATCAATC--GA-CGAATTCAGATTCAGATTT 258
Query 303 GAGATCCAATTTC-AATCCATTTGAACAAATCGCGATTCAGGTCAAAAAAGCGTTAGATT 361
| ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 259 GCGATCCAA-TTCGAATCCATTTGAACAAATCGCGATTCAGGTCAAGAAAGCGTTAGATT 317
Query 362 CGTTGAAGAAACCTGCTATAGCTGCGGTTTTACTTGGTTTGCTTTTGTTCTATGATCCTA 421
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 318 CGTTGAAGAAACCTGCTATAGCTGCGGTTTTGCTTGGTTTGCTTTTGTTCTATGATCCTA 377
Query 422 ATTCGGCTTTAGCTGCGTCTGGTGGTAGAATTGGTGGTAATTCCTTCTCGTCGAGGTCTC 481
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 378 ATTCGGCTTTAGCTGCGTCTGGTGGTAGAATTGGTGGTAACTCCTTCTCGTCGAGGTCTC 437
Query 482 GGAGCtcttcttcttcttcttcGCAATCGTATTCTGTGCCGAGAACATCGAATCCGAGCT 541
| ||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||
Sbjct 438 GAAGCTCTTCTTCTTCTTC-T--CAATCGTATTCTGTGCCGAGAACATCGAGTCCGAGCT 494
Query 542 TTTCGTACTCTGCTAGGACCGCTCCGTACTATGGACCGTCACC-tttcggtgggggtttt 600
|||||||||| |||||||||||||||||||||||||||||||| ||| ||||| ||||||
Sbjct 495 TTTCGTACTCCGCTAGGACCGCTCCGTACTATGGACCGTCACCGTTT-GGTGGAGGTTTT 553
Query 601 gtgggcccggcggttggttttgggtttggtggtttttcgagcttctccttgattttggtt 660
|||| |||||||||||||||||||||||||| |||||||||||||| |||||| |||||
Sbjct 554 ATGGGTCCGGCGGTTGGTTTTGGGTTTGGTGGGTTTTCGAGCTTCTCTTTGATTCTGGTT 613
Query 661 ggtttcgctgcgtttgttttgGTCTCTGGATTCCTCTCAGATCGGTCACAGGATGATAGC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 614 GGTTTCGCTGCGTTTGTTTTGGTCTCTGGATTCCTCTCAGATCGGTCACAGGACGATAGC 673
Query 721 ATTTTAACAGATACTCAGAAAACTAGCGTCATTAAGCTACAGGTGGGGTTGCTTGGTTTG 780
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 674 ATTTTAACCGATACTCAGAAAACTAGCGTCATTAAGCTACAGGTGGGGTTGCTGGGTTTG 733
Query 781 GGGAGGACACTACAACAAGATTTTAATCGTCTTGCTGAAAGTTCGGATACATCCACACCG 840
|||||||| ||||| ||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 734 GGGAGGACTCTACAGCAAGATTTTAATCGTCTTGCTGAAAGTGCAGATACATCCACACCG 793
Query 841 GAGGGTCTGAGCTATGTTTTAACCGAGGCAACATTAGCTTTGCTGAGACACCCTGATTAC 900
||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| || ||
Sbjct 794 GAGGGTCTGAGCTATGTGTTAACCGAGGCAACATTGGCTTTGCTGAGGCACCCGGACTAT 853
Query 901 TGCATCTCTTGTTATTCATCAGTGGATGTGAAGCCGAGTATAGAAAAGGGAGAGAAGCGA 960
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 854 TGCATCTCTTGTTATTCATCAGTGGATGTGAAGCCGAGTATAGAAAAAGGAGAGAAGCGA 913
Query 961 TTTAATCAACTCTCCATTGAAGAACGAGGAAAATTTGATGAGGAGACACTTGTTAACGTG 1020
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 914 TTTAACCAACTCTCCATTGAAGAACGGGGAAAATTTGATGAGGAGACGCTTGTTAACGTG 973
Query 1021 AATAGCATAAAGAGACAAAGCTCGAAGATTC-GGAAAGCTAGCGGTTTCAGCAATGAATA 1079
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 974 AATAGCATAAAGAGACAAAGCTCGAAGA-TCAAGAAAGCTAGCGGTTTCAGCAATGAATA 1032
Query 1080 TATTGTGGTAACCATCTTGATGGCTGCAGAGGGTATACATAAACTGCCACCAATAAACGG 1139
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1033 TATTGTGGTAACCATCTTGGTGGCTGCAGAGGGTATACATAAACTGCCGCCAATAAACGG 1092
Query 1140 AACTACAGATCTGAAGGAAGCCTTACTGAAACTCGGGTCAATACCAAGAAACAAAATAAT 1199
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1093 AACTACAGATCTGAAGGAAGCTTTACTGAAACTCGGGTCAATACCAAGAAACAAAATAAT 1152
Query 1200 GGCAGTAGAAGTACTATGGACACCGCAGAACGAAGCCGACGCATTGTCAGAAAGGGAACT 1259
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1153 GGCAGTAGAAGTACTATGGACACCGCAGAACGAGGCCGACGCATTGTCAGAAAGGGAACT 1212
Query 1260 ACTTGAAGATTACCCACTTTTGAGGCCTTTGTAAATCATTGTGATAATACCAAATAGAAC 1319
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1213 ACTTGAAGATTACCCACTTTTGAGGCCATTGTAAATCATTGTCATAATACCAAATAGAAC 1272
Query 1320 CAATCTCTTGTTAGACGGTACAGTTTCTTACTCTGTAAA 1358
|||||||||||||||||||||||||||||||||| ||||
Sbjct 1273 CAATCTCTTGTTAGACGGTACAGTTTCTTACTCTATAAA 1311
Score = 91.6 bits (49), Expect = 1e-17
Identities = 51/52 (98%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 1414 CTAAACCGGAAATGAAGGCAATTAAGAATCAAATTTGATACCATTAATGATG 1465
|||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1322 CTAAACCGGAAATGAAGGCAATTAAGAATCAAATTTGACACCATTAATGATG 1373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55383216230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5