BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G54530.1

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924207 jgi|Araly1|924207|scaffold_105488.1                        582    5e-166


> Ahg924207 jgi|Araly1|924207|scaffold_105488.1
Length=425

 Score =  582 bits (315),  Expect = 5e-166
 Identities = 363/386 (94%), Gaps = 4/386 (1%)
 Strand=Plus/Plus

Query  1    ATGATCGAAACAGTAATCACAAGCAAAACTCTAATCGGATTCCTTTCCGATACAAAATCA  60
            ||||||||||||||| |||||||||||||||| ||||||||| | ||||| || ||||||
Sbjct  22   ATGATCGAAACAGTATTCACAAGCAAAACTCTCATCGGATTCATCTCCGACACCAAATCA  81

Query  61   TTCGAATCCATAACCAACGACTATTTCCAGATTCTAGATCTAGACAAAAACGGAATGTTG  120
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  82   TTCGAATCCATAACCGACGACTATTTCCAGATTCTAGATCTAGACAAAAACGGAATGTTG  141

Query  121  TCTCCATCGGAGCTTCGTCAAGGTCTCAACAATGTGGTAGCTGTGGAATCTGAGGTCGCT  180
            ||||| || ||||||||||||||||||||| |||| || || ||||||||||| ||||||
Sbjct  142  TCTCCGTCAGAGCTTCGTCAAGGTCTCAACCATGTTGTGGCGGTGGAATCTGAAGTCGCT  201

Query  181  CCTGGAGACGAGACCGATAACGTGTACAATGCGATTTTCGAGAGATTCGGTGAAGATTTG  240
            |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  202  CCTGGAGAAGAGACCGATAACGTGTACAATGCGATTTTCGAGAGATTTGGTGAAGATTTG  261

Query  241  GTTCCAAA-AAATTTTAGGGATTTGATTGCAGAGATTTTGACGGCGATGGCGAGAGGTAT  299
            |||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  262  GTTCCAGAGAAATTT-AGGGATTTGATTGCAGAGATTTTGACGGCGATGGCGAGAGGAAT  320

Query  300  CGGAAACTCGCCGGTGATTATGGTTGTGCATAATGATGGATTGATTATGAAAGCTGTTCT  359
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  321  CGGAAACTCGCCGGTGATTATGGTTGTGCATAATGATGGTTTGATTATGAAAGCTGTTCT  380

Query  360  TCATGAATCT-AAACAAGGCAAGTGA  384
            |||||||||| ||| |||||||||||
Sbjct  381  TCATGAATCTGAAA-AAGGCAAGTGA  405



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13736012040


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5