BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G54540.1 Length=863 Score E Sequences producing significant alignments: (Bits) Value Ahg924208 jgi|Araly1|924208|scaffold_105489.1 1168 0.0 > Ahg924208 jgi|Araly1|924208|scaffold_105489.1 Length=761 Score = 1168 bits (632), Expect = 0.0 Identities = 714/754 (95%), Gaps = 4/754 (1%) Strand=Plus/Plus Query 1 AAGTTGTAGATCCATGGGAGATCAACAAAAAATTCACCCGGTTCTTCAAATGGAAGCCAA 60 |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 9 AAGTTGTAGATCAATGGGAGATCAACAAAAAGTTCACCCGGTTCTTCAAATGGAAGCCAA 68 Query 61 CAAGACGAAGACAACAACACCAGCTCCCGGAAAGACAGTCTTGCTTCCGGTTCAACGGCC 120 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 69 CAAGACGAAGACAACAACACCAGCTCCCGGAAAGACAGACTTGCTTCCGGTTCAACGGCC 128 Query 121 GATTCCGCCTCCTGTTATTCCTAGTAAGAATCGAAATATGTGCTGCAAAATCTTTTGTTG 180 ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 129 GATTCTGCCTCCTGTTATGCCTAGTAAGAATCGAAATATGTGCTGCAAAATCTTTTGTTG 188 Query 181 GGTGTTAAGCCTTCTAGTCATTGCATTGATCGCGTTAGCAATTGCGGTTGCGGTTGTATA 240 ||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||| Sbjct 189 GGTGTTAAGCCTTCTAGTCCTTGCAATGATCGCGTTAGGGATTGCGGTTGCGGTTGTATA 248 Query 241 CTTTGTTTTCCACCCTAAACTCCCGAGTTACGAAGTCAACAGTTTACGAGTTACCAACCT 300 ||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||| Sbjct 249 CTTTGTTTTCCACCCTAAACTCCCGCGATACGAAGTAAACAGTTTACGAGTTACCAACCT 308 Query 301 TGGAATCAATCTAGACCTCTCTCTTTCCGCGGAGTTTAAAGTCGAGATCACAGCTCGTAA 360 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 309 TGGAATCAATCTAGACCTCTCTCTTTCCGCGGAGTTCAGAGTCGAGATCACAGCTCGTAA 368 Query 361 TCCCAACGAAAAGATTGGGATTTATTACGAGAAAGGAGGTCATATCGGTGTGTGGTACGA 420 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 369 TCCCAACGAAAAGATTGGGATTTATTACGAGAAAGGAGGCCATATCGGTGTGTGGTACGA 428 Query 421 CAAGACAAAGCTATGTGAAGGCCCTATACCGAGGTTTTATCAAGGACATCGCAATGTAAC 480 ||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||| || Sbjct 429 CAAGACAAAGCTATGCGAGGGCCCGATACCGAGGTTTTATCAAGGGCATCGCAATGTCAC 488 Query 481 TAAACTAAATGTGGCTCTAACGGGAAGAGCGCAATATGGGAACACTGTCTTGGCGGCATT 540 |||||| ||||| ||| ||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 489 TAAACTGAATGTCGCTTTAACGGGAAGAGCACAATACGGGAACACTGTCTTGGCGGCATT 548 Query 541 GCAGCAGCAACAACAAACAGGACGTGTACCGTTAGATCTTAAAGT-GAATGCACCTGTCG 599 ||||||||||||||| ||||||||||| ||||||||||| ||||| || ||||||||| | Sbjct 549 GCAGCAGCAACAACAGACAGGACGTGTGCCGTTAGATCTCAAAGTAGA-TGCACCTGTTG 607 Query 600 CCATCAAACTCGG-AAATCTGAAGATGAAGAAGATTCGGATATTGGGGAGTTGTAAGCTT 658 || | |||||||| |||| |||||||||||||||||||||||||||||| |||||| ||| Sbjct 608 CCGTAAAACTCGGGAAAT-TGAAGATGAAGAAGATTCGGATATTGGGGAATTGTAAACTT 666 Query 659 GTTGTTGATAGTTTATCAACGAACAATAATATCAACATCAAAGCTAGTGATTGCAGTTTT 718 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 667 GTTGTTGATAGTTTATCAACAAACAATAATATCAACATCAAAGCTAGTGATTGCAGTTTT 726 Query 719 AAGGCCAAACTCTGAGATGTTCTTAGATCTAGGC 752 ||||||||||||||||||| |||||| ||||||| Sbjct 727 AAGGCCAAACTCTGAGATGGTCTTAGTTCTAGGC 760 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31947004446 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5