BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54540.1
Length=863
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924208 jgi|Araly1|924208|scaffold_105489.1 1168 0.0
> Ahg924208 jgi|Araly1|924208|scaffold_105489.1
Length=761
Score = 1168 bits (632), Expect = 0.0
Identities = 714/754 (95%), Gaps = 4/754 (1%)
Strand=Plus/Plus
Query 1 AAGTTGTAGATCCATGGGAGATCAACAAAAAATTCACCCGGTTCTTCAAATGGAAGCCAA 60
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 9 AAGTTGTAGATCAATGGGAGATCAACAAAAAGTTCACCCGGTTCTTCAAATGGAAGCCAA 68
Query 61 CAAGACGAAGACAACAACACCAGCTCCCGGAAAGACAGTCTTGCTTCCGGTTCAACGGCC 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 69 CAAGACGAAGACAACAACACCAGCTCCCGGAAAGACAGACTTGCTTCCGGTTCAACGGCC 128
Query 121 GATTCCGCCTCCTGTTATTCCTAGTAAGAATCGAAATATGTGCTGCAAAATCTTTTGTTG 180
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 129 GATTCTGCCTCCTGTTATGCCTAGTAAGAATCGAAATATGTGCTGCAAAATCTTTTGTTG 188
Query 181 GGTGTTAAGCCTTCTAGTCATTGCATTGATCGCGTTAGCAATTGCGGTTGCGGTTGTATA 240
||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||
Sbjct 189 GGTGTTAAGCCTTCTAGTCCTTGCAATGATCGCGTTAGGGATTGCGGTTGCGGTTGTATA 248
Query 241 CTTTGTTTTCCACCCTAAACTCCCGAGTTACGAAGTCAACAGTTTACGAGTTACCAACCT 300
||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||
Sbjct 249 CTTTGTTTTCCACCCTAAACTCCCGCGATACGAAGTAAACAGTTTACGAGTTACCAACCT 308
Query 301 TGGAATCAATCTAGACCTCTCTCTTTCCGCGGAGTTTAAAGTCGAGATCACAGCTCGTAA 360
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 309 TGGAATCAATCTAGACCTCTCTCTTTCCGCGGAGTTCAGAGTCGAGATCACAGCTCGTAA 368
Query 361 TCCCAACGAAAAGATTGGGATTTATTACGAGAAAGGAGGTCATATCGGTGTGTGGTACGA 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 369 TCCCAACGAAAAGATTGGGATTTATTACGAGAAAGGAGGCCATATCGGTGTGTGGTACGA 428
Query 421 CAAGACAAAGCTATGTGAAGGCCCTATACCGAGGTTTTATCAAGGACATCGCAATGTAAC 480
||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 429 CAAGACAAAGCTATGCGAGGGCCCGATACCGAGGTTTTATCAAGGGCATCGCAATGTCAC 488
Query 481 TAAACTAAATGTGGCTCTAACGGGAAGAGCGCAATATGGGAACACTGTCTTGGCGGCATT 540
|||||| ||||| ||| ||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 489 TAAACTGAATGTCGCTTTAACGGGAAGAGCACAATACGGGAACACTGTCTTGGCGGCATT 548
Query 541 GCAGCAGCAACAACAAACAGGACGTGTACCGTTAGATCTTAAAGT-GAATGCACCTGTCG 599
||||||||||||||| ||||||||||| ||||||||||| ||||| || ||||||||| |
Sbjct 549 GCAGCAGCAACAACAGACAGGACGTGTGCCGTTAGATCTCAAAGTAGA-TGCACCTGTTG 607
Query 600 CCATCAAACTCGG-AAATCTGAAGATGAAGAAGATTCGGATATTGGGGAGTTGTAAGCTT 658
|| | |||||||| |||| |||||||||||||||||||||||||||||| |||||| |||
Sbjct 608 CCGTAAAACTCGGGAAAT-TGAAGATGAAGAAGATTCGGATATTGGGGAATTGTAAACTT 666
Query 659 GTTGTTGATAGTTTATCAACGAACAATAATATCAACATCAAAGCTAGTGATTGCAGTTTT 718
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 667 GTTGTTGATAGTTTATCAACAAACAATAATATCAACATCAAAGCTAGTGATTGCAGTTTT 726
Query 719 AAGGCCAAACTCTGAGATGTTCTTAGATCTAGGC 752
||||||||||||||||||| |||||| |||||||
Sbjct 727 AAGGCCAAACTCTGAGATGGTCTTAGTTCTAGGC 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31947004446
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5