BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54575.1
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474732 jgi|Araly1|474732|fgenesh2_kg.1__4686__AT1G54575.1 462 1e-129
> Ahg474732 jgi|Araly1|474732|fgenesh2_kg.1__4686__AT1G54575.1
Length=605
Score = 462 bits (250), Expect = 1e-129
Identities = 418/492 (85%), Gaps = 39/492 (8%)
Strand=Plus/Plus
Query 156 ATGAAGGTGAATCAAAGCAG-AAGTACACAACTAAGAAGATCCCAAAATGGAAGCATAAT 214
|||||||| || | ||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 143 ATGAAGGTAAAACGAAG-GGTAAGTACACGACTAAGAAGATCCCAAAATGGAAGCATAAT 201
Query 215 GATTCAGAGAGA-AAGATAGGTCAAAAGCAAAACAATGAAACACCAACTATGATTGTCGC 273
||||||| || | ||||||||||||||| | ||||||||| |||||||||||||||||||
Sbjct 202 GATTCAGGGA-ACAAGATAGGTCAAAAGGAGAACAATGAACCACCAACTATGATTGTCGC 260
Query 274 TGGTGGATGGGTCAGGCCAAATCGAGCCATGTGGGCTTCACCTCCAAATTCCTCGAGCTC 333
|||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 261 TGGTGGATGGGTCAGGCCAAATCGAGCCATGTGGGCTTCACCTCCAAA--CA---AGC-C 314
Query 334 CAAGCCACAA-AAGAAT-AATTAATTATT-GAGAGAAGCTGGTGGTAACATATATAAGAA 390
| | |||| || ||| ||||| ||||| |||||||||| |||| ||||||| | |||
Sbjct 315 -A--C-ACAACAATAATTAATTA-TTATTTGAGAGAAGCTAGTGGGAACATATCTGTGAA 369
Query 391 CTCAAATTAAATGTTCAAGTTGG-GAAGTAGACAACTGTTGAGCGAGAACAAGGCCAGTC 449
||||||||| | ||||||||||| || |||||||| |||||||| ||||||||||| ||
Sbjct 370 CTCAAATTACAGGTTCAAGTTGGCGA-GTAGACAAATGTTGAGCAAGAACAAGGCCGGTG 428
Query 450 GT-TTCA-AAACATCCATTAAAAACTCAGCCATGGAGGGTGTGGTGGCATATATATGTGT 507
|| || ||||||||||| ||| ||||||||||||| |||||||||||||||| | | |
Sbjct 429 GTCTTTTGAAACATCCATTGAAA-CTCAGCCATGGAGCGTGTGGTGGCATATAT-T-TAT 485
Query 508 GTAGACTCTAGATGGGTGAATTTTATAAGTTTATTACATGTAATA-T-TACATCATGGAA 565
|| | |||| ||||||||||||||||||||||||| |||||| | ||| |||||||
Sbjct 486 GT-G--TCTAAATGGGTGAATTTTATAAGTTTATTATGCGTAATACTGTAC--CATGGAA 540
Query 566 GTTGATATGTCtatatatatataCTGTATATTGCGTGCCTTTGTAATATATAGAATTCAA 625
|||||||||| |||||| ||||||||| || || | |||||||||||||||||||
Sbjct 541 GTTGATATGT-TATATA------CTGTATATTACGAGCGTATGTAATATATAGAATTCAA 593
Query 626 TAAAACCTATCT 637
||||||||||||
Sbjct 594 TAAAACCTATCT 605
Score = 141 bits (76), Expect = 6e-33
Identities = 95/104 (91%), Gaps = 1/104 (1%)
Strand=Plus/Plus
Query 68 GCTGATCGTGTAGTTGCTCGGGTAGAGAAGTCGGTCAATTTGGTTATAGGTCATAGGCAA 127
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 16 GCTGACCGTGTAGTTGCTCGGGTAGAGAAGTCGGTCAATTTGGTTATCGGTCATAGACAA 75
Query 128 ACACAAAGGCAGGCCGGCTCAAGGGAGTATGAAGGTGAATCAAA 171
||||||||||||||| | |||| |||| ||||| || |||||||
Sbjct 76 ACACAAAGGCAGGCCAGTTCAACGGAGCATGAACGT-AATCAAA 118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23864946042
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5