BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54580.1
Length=881
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474734 jgi|Araly1|474734|fgenesh2_kg.1__4688__AT1G54580.1 863 0.0
Ahg337751 jgi|Araly1|337751|fgenesh1_pg.C_scaffold_1004316 604 3e-172
> Ahg474734 jgi|Araly1|474734|fgenesh2_kg.1__4688__AT1G54580.1
Length=768
Score = 863 bits (467), Expect = 0.0
Identities = 664/750 (89%), Gaps = 49/750 (7%)
Strand=Plus/Plus
Query 113 tttgtGACTATAAAACCTCTCCCACTTGGTTCTtcactctcactgtttctcatctcttcg 172
||| ||||||||||| |||||||||||| |||||||||||||||| | | | ||| |
Sbjct 57 TTTTTGACTATAAAAACTCTCCCACTTGCTTCTTCACTCTCACTG-TGC-C--CTC-ACA 111
Query 173 tcttctccgcctccttcaatctcactccgatctctctACGATTCATTCGTTCTATGGCTT 232
|| ||| | | || | | |||||||||||||||||||||||| ||| |||||||
Sbjct 112 TC-TCT-----T-CGTC--T-T--CTCCGATCTCTCTACGATTCATTC-TTCAATGGCTT 158
Query 233 CCATTGCTGCTTCTGCTTCTATTTCCCTTCAAGCTCGTCCTCGCCAACTGGCGATCGCGG 292
|||||||||||||| |||||| || ||| |||||||||||||||||||||||||| ||||
Sbjct 159 CCATTGCTGCTTCTTCTTCTACTTACCTACAAGCTCGTCCTCGCCAACTGGCGATTGCGG 218
Query 293 CTAGTCAAGTTAAAAGCTTTAGCAATGGAAGAAGAAG-CAGTCTTTCTTTTAATCTCCGC 351
||| |||||||| | |||||||| ||||||||||||| || ||||||||||||||| |||
Sbjct 219 CTAATCAAGTTAGATGCTTTAGCTATGGAAGAAGAAGCCA-TCTTTCTTTTAATCTTCGC 277
Query 352 CAGCTTCCTACCCGCTTGA-CTGTTTCCTGCGCTGCAAAACCTGAGACAGTGGACAAGGT 410
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 278 CAGCTTCCTACCCGCTTGAGC-GTTTCCTGCGCTGCAAAACCTGAGACAGTGGACAAGGT 336
Query 411 GTGTGCAGTTGTCAGAAAGCAACTCTCACTTAAAGAGGCTGACGAAATTACTGCTGCCAC 470
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 337 GTGTGCAGTTGTCAGAAAGCAACTCTCACTTAAAGAGGCTGACGAAATTACCGCTGCCAC 396
Query 471 CAAATTTGCTGCACTTGGTGCTGATTCCCTTGATACGGTGGAGATTGTGATGGGACTAGA 530
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 397 CAAATTTGCTGCACTTGGTGCTGATTCTCTTGATACGGTGGAGATTGTGATGGGACTAGA 456
Query 531 GGAAGAGTTCGGGATTGAAATGGCGGAGGAGAAAGCACAGTCAATCGCCACAGTTGAGCA 590
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 457 GGAAGAGTTTGGGATTGAAATGGCGGAGGAGAAAGCACAGTCAATCGCTACAGTTGAGCA 516
Query 591 AGCAGCTGCGCTCATTGAGGAGCTCTTGTTTGAAAAGGCCAAGTAGAATATC-TTT-ATT 648
|||||||| ||||||||||||||||||||| |||||||| ||||||| |||| ||| |||
Sbjct 517 AGCAGCTGAGCTCATTGAGGAGCTCTTGTTGGAAAAGGCAAAGTAGACTATCGTTTTATT 576
Query 649 ACATTAGCaaaaacgaaaaaaatcaaaaCCCAAACCA-CTATCTTATTGTTTCGTTAGCT 707
||||||||||||| | |||| || | | | || ||||||||||| |||||||
Sbjct 577 ACATTAGCAAAAA--AC------CAAA-CC-A--CTATCT-TCTTATTGTTTGGTTAGCT 623
Query 708 AGAGAGCAATTGTGTCTGTTGAAAGATTTTATG-T-TATTTTGGGGAAATTATTACAAGG 765
|||||||||||||||||||||| ||||| ||| | ||||||||| ||||||||||||||
Sbjct 624 AGAGAGCAATTGTGTCTGTTGA--GATTT-ATGCTATATTTTGGGAAAATTATTACAAGG 680
Query 766 CTTGTATCTGACTTTTATCTTTCTTCTAAAACATTTTACTTTCAGCCTTCATCAAACTCT 825
||||||| |||| | |||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 681 CTTGTATTTGACAT--ATCTTTCTTCTAAAACATTTTACTTTCACCCTTCATAAAACTCT 738
Query 826 CT-T---ACGAAACTTATGTAGTCTCATTT 851
|| | |||||| ||||| |||||| |||
Sbjct 739 CTATCTTACGAAAGTTATGAAGTCTCCTTT 768
> Ahg337751 jgi|Araly1|337751|fgenesh1_pg.C_scaffold_1004316
Length=411
Score = 604 bits (327), Expect = 3e-172
Identities = 385/413 (93%), Gaps = 4/413 (1%)
Strand=Plus/Plus
Query 226 ATGGCTTCCATTGCTGCTTCTGCTTCTATTTCCCTTCAAGCTCGTCCTCGCCAACTGGCG 285
||||||||||||||||||||| |||||| ||| || | |||||||||||||||||||| |
Sbjct 1 ATGGCTTCCATTGCTGCTTCTTCTTCTACTTCTCTGCTAGCTCGTCCTCGCCAACTGGTG 60
Query 286 ATCGCGGCTAGTCAAGTTAAAAGCTTTAGCAATGGAAGAAGAAGC-AGTCTTTCTTTTAA 344
|| ||||||| |||||||| | |||||||| |||||||||||||| | ||||||||||||
Sbjct 61 ATTGCGGCTAATCAAGTTAGATGCTTTAGCTATGGAAGAAGAAGCTA-TCTTTCTTTTAA 119
Query 345 TCTCCGCCAGCTTCCTACCCGCTTGACTGTTTCCTGCGCTGCAAAACCTGAGACAGTGGA 404
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 TCTTCGCCAGCTTCCTACCCGCTTGAGTGTTTCCTGCGCTGCAAAACCTGAGACAGTGGA 179
Query 405 CAAGGTGTGTGCAGTTGTCAGAAAGCAACTCTCACTTAAAGAGGCTGACGAAATTACTGC 464
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 180 CAAGGTGTGTGCAGTTGTCAGAAAGCAACTCTCACTTAAAGAGGAAGACGAAGTTACCGC 239
Query 465 TGCCACCAAATTTGCT-GCACTTGGTGCTGATTCCCTTGATACGGTGGAGATTGTGATGG 523
||| ||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 240 TGCTACCAAATTT-CTTGCACTTGGTGCTGATTCTCTTGACACGGTGGAGATTGTGATGG 298
Query 524 GACTAGAGGAAGAGTTCGGGATTGAAATGGCGGAGGAGAAAGCACAGTCAATCGCCACAG 583
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 299 GACTAGAGGAAGAGTTTGGGATTGAAATGGCGGAGGAGAAAGCACAGTCAATCGCGACAG 358
Query 584 TTGAGCAAGCAGCTGCGCTCATTGAGGAGCTCTTGTTTGAAAAGGCCAAGTAG 636
||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 359 TTGAGCAAGCAGCTGAGCTCATTGAGGAGCTCTTGTTGGAAAAGGCCAAGTAG 411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32633216952
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5