BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54590.1
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473339 jgi|Araly1|473339|fgenesh2_kg.1__3293__AT1G54590.1 1127 0.0
Ahg918979 jgi|Araly1|918979|scaffold_100260.1 704 0.0
Ahg474736 jgi|Araly1|474736|fgenesh2_kg.1__4690__AT1G54600.1 252 5e-66
> Ahg473339 jgi|Araly1|473339|fgenesh2_kg.1__3293__AT1G54590.1
Length=774
Score = 1127 bits (610), Expect = 0.0
Identities = 722/776 (93%), Gaps = 7/776 (1%)
Strand=Plus/Plus
Query 362 ATGACTCAAGGAGAGACAAACGATTTCTTGCGTGACATCACTGAGCTCAAGAAGCGGGAG 421
||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 1 ATGACTCAAGGAGAGACGAACGATTTCTTGTGTGACATCGCTGAGCTCAAGAAGCGGCAG 60
Query 422 AGGAGTAGTGGTCTCATGAATGATAGGAAGAGGAAGACGAGT-A--ATGATGATGAGCTC 478
| |||||||||| |||||| |||||||||||||||||||||| | |||||||||| |||
Sbjct 61 AAGAGTAGTGGTGTCATGAGTGATAGGAAGAGGAAGACGAGTGATGATGATGATGAACTC 120
Query 479 ATTGGTGCTGAGAAGGAGGATTTGAAGCTTTTGGAAGAAGCTAATTTCGAGGATTTATGC 538
| ||||||||| |||||| ||||||||| |||| |||||||| |||||||||||||||||
Sbjct 121 AGTGGTGCTGATAAGGAGAATTTGAAGCGTTTGAAAGAAGCTGATTTCGAGGATTTATGC 180
Query 539 GACGAGGACAAGATCCTTGTGTTCTGCAAGAAGCTGTTGCTTGAATGGAAGCAGGAACTT 598
|||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 181 GACGAGGACAAGATTCTTGTGTTCTGCAAGAAGTTATTGCTTGAATGGAAGCAGGAACTT 240
Query 599 GAGGCTATGGAAAACACTGAGAGGAGAACTGCTATAGGGAAACAGATGCTAGCCACTTTT 658
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 GATGCTATGGAAAACACTGAGAGGAGAACTGCTATAGGGAAACAGATGCTAGCCATTTTT 300
Query 659 AACCAGTGTGCTAGGTATCTAACTCCTCTCTTCCACTTATGCCGGAACAAGTGTTTACCA 718
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 AACCAGTGTGCTAGGTATCTAACTCCTCTCTTCCACTTATGCCGGAACAAGGGTTTACCA 360
Query 719 GCTGACATTCGTCAAGGTTTAATGGTGATGGTTAACTGCTGGATAAAGCGAGATTACCTC 778
|||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 361 GCTGACATTCGTCAAGCTTTAATGGTGATGGTTAACTGCTGCATAAAGCGAGACTACCTC 420
Query 779 GATGCAACGGCTCAATTCATCAAACTAGCCATAGGGAACGCACCATGGCCCATCGGTGTG 838
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 GATGCAATGGCTCAATTCATCAAACTAGCCATAGGGAATGCACCATGGCCCATCGGTGTG 480
Query 839 ACTATGGTTGGTATTCACGAACGTTCTGCCCGAGAGAAGATTTCTACTAGCAGTAGTGTT 898
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 ACTATGGTTGGTATTCACGAACGTTCTGCCCGAGAGAAGATTTCTACCAGCAGTAGTGTT 540
Query 899 GCTCACATCATGAATAACGAAACCACTCGCAAGTATCTTCAGTCAGTTAAAAGATTGATG 958
|||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 GCTCACATCATGAACGATGAAACCACTCGCAAGTATCTTCAGTCAGTTAAAAGACTGATG 600
Query 959 ACATTT-TGTCAACGACGTTATTCAGCTTTGCCTTCTAAATCCATTGAGTTCAATAGCTT 1017
|| ||| |||||| |||| ||| || || ||||||||||| || ||||||||||||||||
Sbjct 601 AC-TTTCTGTCAAAGACGCTATCCAACTATGCCTTCTAAAGCCGTTGAGTTCAATAGCTT 659
Query 1018 AGCCAACGGAAGC-AATTTACATTCGTTGCTCGCTGAAGAGAGATTCTTTGCTGCTGATC 1076
||||||||||||| |||| ||| ||||||||||||| ||||||||||| || ||||||||
Sbjct 660 AGCCAACGGAAGCGAATT-ACAGTCGTTGCTCGCTGGAGAGAGATTCTGTGGTGCTGATC 718
Query 1077 GCGAACGAGTCTCCGAGGAGAGACTCTGGCTCATGCCTTCTCTGAACGAAATCTAG 1132
|| |||||||||||||||| |||||| | ||||||||||||| ||||||||||||
Sbjct 719 GCCAACGAGTCTCCGAGGATAGACTCCGAATCATGCCTTCTCTCAACGAAATCTAG 774
> Ahg918979 jgi|Araly1|918979|scaffold_100260.1
Length=1295
Score = 704 bits (381), Expect = 0.0
Identities = 568/657 (86%), Gaps = 17/657 (3%)
Strand=Plus/Plus
Query 480 TTGGTGCTGAGAAGGAGGATTTGAAGCTTTTGGAAGAAGCTAA-TTTCGAGGATTTATGC 538
||| |||||| || | ||| |||||| ||| | | ||||||| ||| |||||| |||||
Sbjct 631 TTGATGCTGATAA--A-GATATGAAGCGTTT-G-A-AAGCTAACTTT-GAGGATCTATGC 683
Query 539 GACGAGGACAAGATCCTTGTGTTCTGCAAGAAGCTGTTGCTTGAATGGAAGCAGGAACTT 598
|| ||||| |||||||||||||| | ||||||||| ||| |||||||||||||||| |||
Sbjct 684 GATGAGGATAAGATCCTTGTGTTTTACAAGAAGCTATTGATTGAATGGAAGCAGGAGCTT 743
Query 599 GAGGCTATGGAAAACACTGAGAGGAGAACTGCTATAGGGAAACAGATGCTAGCCACTTTT 658
|| || ||||| |||||||||||||||||||| | ||||||||||||| |||||||||||
Sbjct 744 GATGCAATGGAGAACACTGAGAGGAGAACTGCCAAAGGGAAACAGATGGTAGCCACTTTT 803
Query 659 AACCAGTGTGCTAGGTATCTAACTCCTCTCTTCCACTTATGCCGGAACAAGTGTTTACCA 718
|| ||||||||||||||||| |||||||||| |||||||| |||| ||| ||||||||
Sbjct 804 AAGCAGTGTGCTAGGTATCTTGTTCCTCTCTTCAACTTATGCAGGAAGAAGGGTTTACCA 863
Query 719 GCTGACATTCGTCAAGGTTTAATGGTGATGGTTAACTGCTGGATAAAGCGAGATTACCTC 778
|||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 864 GCTGACATTCGTCAAGCTTTAATGGTGATGGTTAACCACTGCATAAAGCGAGACTACCTT 923
Query 779 GATGCAACGG-CTCAATTCATCAAACTAGCCATAGGGAACGCACCATGGCCCATCGGTGT 837
| ||||| || | || | |||||||||||| || |||||||| |||||||| || || ||
Sbjct 924 GCTGCAATGGAC-CACTACATCAAACTAGCTATCGGGAACGCGCCATGGCCTATTGGAGT 982
Query 838 GACTATGGTTGGTATTCACGAACGTTCTGCCCGAGAGAAGATTTCTACTAGCAGTAGTGT 897
||||||||||||||||||||||||||| || |||||||||| || ||| | || |||||
Sbjct 983 GACTATGGTTGGTATTCACGAACGTTCAGCTCGAGAGAAGA-TT-TAC-ACCAACAGTGT 1039
Query 898 TGCTCACATCATGAATAACGAAACCACTCGCAAGTATCTTCAGTCAGTTAAAAGATTGAT 957
||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1040 TGCTCACATCATGAACGATGAAACCACTCGCAAGTATCTTCAGTCAGTTAAAAGACTGAT 1099
Query 958 GACATTT-TGTCAACGACGTTATTCAGCTTTGCCTTCTAAATCCATTGAGTTCAATAGCT 1016
||| ||| |||||| |||||||| || || ||||||||||| || |||||||||||||||
Sbjct 1100 GAC-TTTCTGTCAAAGACGTTATCCAACTATGCCTTCTAAAGCCGTTGAGTTCAATAGCT 1158
Query 1017 TAGCCAACGGAAGCAATTTACATTCGTTGCTCGCTGAAGAGAGATTCTTTGCTGCTGATC 1076
|||||||||||||| | ||||| || ||||| || |||||||||||||||| || | |||
Sbjct 1159 TAGCCAACGGAAGCGACTTACAGTCCTTGCTAGCCGAAGAGAGATTCTTTGGTGGTAATC 1218
Query 1077 GCGAACGAG-TCTCCGAGGAGAGACTCTGGCTCATGCCTTCTCTGAACGAAATCTAG 1132
| |||| || |||| |||||||||||| ||||||||||||||| || ||||| ||||
Sbjct 1219 GTGAAC-AGGTCTCAGAGGAGAGACTCCGGCTCATGCCTTCTCAGAGCGAAAGCTAG 1274
> Ahg474736 jgi|Araly1|474736|fgenesh2_kg.1__4690__AT1G54600.1
Length=941
Score = 252 bits (136), Expect = 5e-66
Identities = 168/183 (92%), Gaps = 3/183 (2%)
Strand=Plus/Minus
Query 2 AGAAAGTACCTTACCAGCTCCATCTCTGAAGAATAATATCCCAAGATGGTCGTTTCGAAA 61
||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||
Sbjct 815 AGAAAGTACCTTACCAGCTCCATTTCTGAAG---CATATCCCAAGATGCTCGTTTCGAAA 759
Query 62 TCAACAAACTCGAGAGACGATAACAAACACTTGGGCGCAGATGAAAATCCGAATGAATTC 121
|||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||
Sbjct 758 TCAACAAACTCGAGAGACGATAACAAACACTTAGGCACAGATGAAAATCAGAATGAATTC 699
Query 122 ATCAACTCCAAATGCTTTAAGCTAGCTTCCCATTTCAAGACAAGGGACTTCAGATTCGGA 181
|||| |||||||| |||| ||||| ||||||||||||||| |||||| ||||||||||||
Sbjct 698 ATCACCTCCAAATACTTTGAGCTATCTTCCCATTTCAAGATAAGGGATTTCAGATTCGGA 639
Query 182 CAG 184
|||
Sbjct 638 CAG 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42202069119
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5