BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54600.1
Length=1123
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474736 jgi|Araly1|474736|fgenesh2_kg.1__4690__AT1G54600.1 634 0.0
> Ahg474736 jgi|Araly1|474736|fgenesh2_kg.1__4690__AT1G54600.1
Length=941
Score = 634 bits (343), Expect = 0.0
Identities = 408/438 (93%), Gaps = 10/438 (2%)
Strand=Plus/Plus
Query 1 GATTTCAATGCCTTTGTGAGTTATGGTGACAAGTA-TTCGAATCTGATAGAGTGTTTTGC 59
||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||
Sbjct 1 GATTTCAATGCCTTTGTGAGTTATGGTGACAAGTATTTAGAATCTGATAAAGTGTTTTGC 60
Query 60 TTAGACCAAGTCAAGCTAACTATTGATAAAAGCCACGGTGGTGTAGGTGATACGTCTTAT 119
||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 61 ATAGACAAAGTCAAGCTAACTATTGATGAAAGCCACGGTGGTGTAGATGATACGTCTTAT 120
Query 120 TTCACATCATGGATTGATATATACTCTAGTAAAGCGTAGCATCACACATCTAGATGTTAA 179
|||||||||||||||| || ||||||||||||||||||||||||||||||| |||||
Sbjct 121 TTCACATCATGGATTG----ATGCTCTAGTAAAGCGTAGCATCACACATCTAGAGGTTAA 176
Query 180 GTGTCTGATCTTCTAGATTTTGAGTATCATGAGATGCCCCTAACCTTTTATATCTGCAAG 239
| || |||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 177 --G--TG-TCTTCTAGATCTTGAGTATCATGAGATGCCCCTAATCTTTTATATCTGCAAG 231
Query 240 ACACTCGTATACCTAAAACTGGCTCGGGTGAGCTTTGATGATGTCGAGTTTGTTTCTTTA 299
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 232 ACACTCGTATACCTAAAACTTGCTCGGGTGAGCTTTGATGATGTCGAGTTTGTTTCTTTA 291
Query 300 CCTCTTCTCAAGACTATGCATTTAAAAGATAATATGTATCCCAATGAAGCCACTTTTGAG 359
|||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 292 CCTCTTCTGAAGACAATGCATTTAAAAGATAATATGTATCCCAGTGAAGCCACTTTTGAG 351
Query 360 AGACTTGTCTCATCCTGTTCCCTCTCGGAAGAGTTAAAGATTGTTGCATGTTTGAAGCAT 419
|||||||| ||||||||| |||||| |||||||||||||||||||| ||||||||| |||
Sbjct 352 AGACTTGTTTCATCCTGTCCCCTCTTGGAAGAGTTAAAGATTGTTGGATGTTTGAATCAT 411
Query 420 AATGCGAAAGTCTTTCGG 437
||||| ||||||||||||
Sbjct 412 AATGCAAAAGTCTTTCGG 429
Score = 425 bits (230), Expect = 3e-118
Identities = 284/310 (92%), Gaps = 4/310 (1%)
Strand=Plus/Plus
Query 813 CTGTCCGAATCTGAAGTCCCTTGTCTTGAAATGGGAAGCTAGCTTAAAGCATTTGGAGTT 872
||||||||||||||| |||||| ||||||||||||||| ||||| |||| |||||||| |
Sbjct 636 CTGTCCGAATCTGAAATCCCTTATCTTGAAATGGGAAGATAGCTCAAAGTATTTGGAGGT 695
Query 873 GATGAATTCATTCGGATTTTCATCTGCGCCCAAGTGTTTGTTATCGTCTCTCGAGTTTGT 932
||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 696 GATGAATTCATTCTGATTTTCATCTGTGCCTAAGTGTTTGTTATCGTCTCTCGAGTTTGT 755
Query 933 TGATTTCGAAACGACCATCTTGGGATATTATTCTTCAGAGATGGAGCTGGTAAGGTACTT 992
|||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 756 TGATTTCGAAACGAGCATCTTGGGATATG---CTTCAGAAATGGAGCTGGTAAGGTACTT 812
Query 993 TCTTGAGAATTCGGCAATCCTaaaaaaaCTCTCTCTACGTTTGCGCTATTATGAAAAACG 1052
||| | ||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
Sbjct 813 TCTAGTGAATTCGGCAATCCTCAAAAAACTCTCTCTACGTTTGCGCCATTATGAAAAAAG 872
Query 1053 ACAATATGACATATATCTACAAACTCATCAAAATCCCAAGACGCTATATCACATGTCATG 1112
|||||||||||| | || ||||||||||||||||||||||||||| |||||| ||||| |
Sbjct 873 ACAATATGACATCT-TCAACAAACTCATCAAAATCCCAAGACGCTCTATCACTTGTCAAG 931
Query 1113 TCGTCGTATC 1122
||||||||||
Sbjct 932 TCGTCGTATC 941
Score = 289 bits (156), Expect = 4e-77
Identities = 191/208 (92%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 527 GCTATGCTTTTTGAGCATTTGTGATTACTTGCCAGAAAGCTTTAGATTAATCAATATGGA 586
||||||||||||||| |||| ||||||||| |||||||||| ||| |||||||||||||
Sbjct 429 GCTATGCTTTTTGAGTATTTATGATTACTTATCAGAAAGCTTCAGAATAATCAATATGGA 488
Query 587 TTTCAATGCCAAGTTAGATATTTCTCTTGCCTTCCCATCAATGAGAAAAAACATGCGCCG 646
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 489 TTCCAATGCCAAGTTAGATATTTCTCTTGCCTTTCCATCAATGAGAAAAAACATGCGCAG 548
Query 647 ttttttttCTCGGAATTTCGAAGGTCGGAGATATGACGATATGGTCAAAGACTATAAAGC 706
|||||| ||||| |||||||||||| |||||||||||||||| ||||||||| ||||||
Sbjct 549 TTTTTTG-CTCGGGATTTCGAAGGTCAGAGATATGACGATATGTTCAAAGACTGTAAAGC 607
Query 707 TCATCCACGAATATGTGAGATTTGAACC 734
|||||||||||||||||| || ||||||
Sbjct 608 TCATCCACGAATATGTGACATCTGAACC 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41858962866
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5