BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54620.1
Length=589
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914824 jgi|Araly1|914824|Al_scaffold_0001_5078 756 0.0
> Ahg914824 jgi|Araly1|914824|Al_scaffold_0001_5078
Length=582
Score = 756 bits (409), Expect = 0.0
Identities = 527/582 (91%), Gaps = 15/582 (3%)
Strand=Plus/Plus
Query 11 ATGTTTTGCTTC--CA-AAGaaaaaaaGAAACAATGAAGTTCTTGATTTACCTCGTTGTG 67
|||||||||| | | |||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1 ATGTTTTGCTACGTAATAAGAAAAAAAAAAACAATGAAGTTCTTGATTTACCTTGTTGTG 60
Query 68 TTTGTTCTTCTTTTCAATGGTTTGACGGCCAACAGAGTGGAAAACTCTCTGGTTCAGAAA 127
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TTTGTTCTTCTTTTCAATGGTTTGACGGCCAACAGAGTGGAAAATTCTCTGGTTCAGAAA 120
Query 128 TATTGCAATCAAAGTTCAAAGTACGCG-GAACGATATTTCTATAAGTTTTGCATTGCATC 186
|||||||||||||||||| |||||| | |||||| |||||||||||||||||||||| ||
Sbjct 121 TATTGCAATCAAAGTTCACAGTACG-GAGAACGACATTTCTATAAGTTTTGCATTGCGTC 179
Query 187 TCTCGAAGAGAATGCGGAAAGTCAGAAA-GCAAGGAATAG-CAATGATTTAACATTGGTA 244
|||||||||||||| |||||||| |||| ||||| ||| | | |||||||||||||| ||
Sbjct 180 TCTCGAAGAGAATGTGGAAAGTC-GAAAAGCAAGAAAT-GTCGATGATTTAACATTGATA 237
Query 245 GGAACGAATAACGCTTTATCAAACCTAACAAACGTGAAAAGAATTGTGGAGAAGATTTTC 304
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 238 GGAACGAATAATGCTTTATCAAACCTAACAAATGTGAAAAGAATTGTGGAGAAGATTCTA 297
Query 305 AACGAGAGAAAATATAAGGGCAGGCTGAGTAAGAAGTTGTTGCAAAAGTGCCTTAAGCTT 364
|||||||| ||||||||| ||| |||||||||||||||||||||||| ||||||||||||
Sbjct 298 AACGAGAGGAAATATAAGAGCAAGCTGAGTAAGAAGTTGTTGCAAAATTGCCTTAAGCTT 357
Query 365 TATTCTGAAGGCTATGACGCGTTAACCTCAGCTTTGAAGTACATTAAAGTG-AGAGATCT 423
|| |||||||||||||| |||||||||||||||||||||||||| ||| || | ||| |
Sbjct 358 TACTCTGAAGGCTATGAGGCGTTAACCTCAGCTTTGAAGTACATCAAAATGCAC-GATTT 416
Query 424 GTTTAAAGTTTCGGTTCATTTGCAGAAAGCAAAAGAAGCACCAAGCATTTGCGAAATGGG 483
||| ||| ||||| ||| |||| ||||||||||||||||| |||||||||||||||||||
Sbjct 417 GTTAAAACTTTCGTTTCGTTTGAAGAAAGCAAAAGAAGCAGCAAGCATTTGCGAAATGGG 476
Query 484 ATTCAACGGCGACAATAAACAAATATCTCC-GATGAAGAAAGAAAACGATGTTCTTTTCG 542
|||||||||||||||| ||||||||||||| | ||| |||||||||||| ||||| ||||
Sbjct 477 ATTCAACGGCGACAATCAACAAATATCTCCAG-TGATGAAAGAAAACGAAGTTCTCTTCG 535
Query 543 ACGTGATCAATATTCCTTACA-GTTTTAATATGAATCGACAT 583
|||||||||| |||||||||| |||| ||| | ||| |||||
Sbjct 536 ACGTGATCAACATTCCTTACATGTTT-AATTTTAATAGACAT 576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21557907785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5