BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54640.1
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474743 jgi|Araly1|474743|fgenesh2_kg.1__4697__AT1G54640.1 604 2e-172
> Ahg474743 jgi|Araly1|474743|fgenesh2_kg.1__4697__AT1G54640.1
Length=849
Score = 604 bits (327), Expect = 2e-172
Identities = 389/420 (93%), Gaps = 0/420 (0%)
Strand=Plus/Plus
Query 1 ATGTCGAATCAACAATCATCACATCTCATTTCATTACACAAAGATGGTTTATACCGTCTA 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1 ATGTCGAATCAACAATCATCACATCTCATTTCATTGCACAAAGATGGTTTATACCTTCTC 60
Query 61 AACCTCAACGAAACCACGTTGTTGAAGCTAGACTTGCCCTTTACATTACCGGCCGAAACC 120
|||||||||||||||| |||| ||||| |||||||| ||||||||||||||| |||||
Sbjct 61 GACCTCAACGAAACCACCTTGTCAAAGCTTGACTTGCCGTTTACATTACCGGCCAAAACC 120
Query 121 GAACCTGTCTGTATTCTTCATTGTCGTGGAATGATGTGTCTGACCCTCAAAGAAAACAAT 180
||||| | ||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 121 GAACCGGCCTGTATTCTTCATTGTCGTGGAATGATGTGTCTGACCCTTAAAGACAACAAT 180
Query 181 GACCTAGCGATTTGGAAACCAGGTTCGGAGGAATTCAAGAGAATACCAATGGTTATACCG 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 181 GACCTAGCGATTTGGAAACCAGGTTCGGATGAATTCAAGAGAATACCAATGGTTATACGG 240
Query 241 GGCCAAACCACAAATCTATTGGGATTTGGTTATGACCGGATTTCTAATGATTACAAGATT 300
||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||
Sbjct 241 GGCCAAACCACAAATCTTTTGGGATTTGGATATGACCGGATTTCTGATGATTACAAGATC 300
Query 301 GTAACGAAAATTGGTTTCAAAACCTATATCTATGCTTTCAAAGAAAGCTGTTGGAGAGAA 360
|| |||| ||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 301 GTGACGATAATCGGTTTCAAAACATATATCTATGCGTTCAAAGAAAGTTGTTGGAGAGAA 360
Query 361 AGTGTACCAGATACTTCTCTTCATCGCAAATTCATAGACCGGACCGGTACGGTTGTGGAT 420
||||||| ||| |||||||||||| ||||||||| ||||||||| |||||||||||||||
Sbjct 361 AGTGTACGAGAAACTTCTCTTCATTGCAAATTCAAAGACCGGACTGGTACGGTTGTGGAT 420
Score = 309 bits (167), Expect = 2e-83
Identities = 257/296 (87%), Gaps = 23/296 (8%)
Strand=Plus/Plus
Query 450 AAAAGGCAAGGAGATCATGCATTGGAATATCGACCCGT-----G-GAAGGAAAATGTTAA 503
|||||||||| ||||||||||||||||| ||||||||| | ||| |||||||||||
Sbjct 570 AAAAGGCAAGAAGATCATGCATTGGAATCTCGACCCGTGGACCGTGAATGAAAATGTTAA 629
Query 504 AGCGTTCAACATTTTAAATGTTGGTTTAGCGTGCTTAGATAGAAACGGAAATTTTGATGT 563
||| ||||||||||| || | | ||| | |||| ||| ||| ||||||||
Sbjct 630 AGCATTCAACATTTTTAA---T-G-TTA-----C-AAGATTCAAA---AAA-TTTGATGT 674
Query 564 TGGTTTTGCGTGCATAGCAAGAAACGAAGAACTCTTCCTAGTGGTGAAAGGTAATGGAAG 623
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 675 TGGTTTTGCGTATATAGCAAGAAACGAAGAACTCTTCATAGTGGTGAAAGGTAATGGAA- 733
Query 624 AA-GAGAAGACAAGGTTATAGTGTATAACGAGAGGCGAGAGGAGTTCACTGAAGTTCCAA 682
|| ||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 734 AAGGAGAAGACAAGTTTATGGTGTATAACGAGAGGCAAGAGGAGTTCACTGAAGTTCCAA 793
Query 683 TTGGTGGTTCTTTGAAAGGGTTTAGATGTATGAGTATATATGACAATCGTTTCTAG 738
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 794 TTGGTGGCTCTTTGGAAGGGTTTAGATGTATGAGTATATATGACAATCGTTTCTAG 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27181639821
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5