BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G54650.2 Length=1188 Score E Sequences producing significant alignments: (Bits) Value Ahg914827 jgi|Araly1|914827|Al_scaffold_0001_5081 737 0.0 > Ahg914827 jgi|Araly1|914827|Al_scaffold_0001_5081 Length=927 Score = 737 bits (399), Expect = 0.0 Identities = 468/501 (93%), Gaps = 5/501 (1%) Strand=Plus/Plus Query 68 ATGGAGAAAAGAGAAGAAGCAGGAGAGTATCATTCCAAAGATTTCGAATGGGAATTTCTC 127 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAGAAAAGAGACGAAGCAGGAGAGTATCATTCCAAAGATTTCGAATGGGAATTTCTC 60 Query 128 AAGAACATCGTCGAGAACGATCCTtctctctcccaccatctccaccaccaccaccaaaat 187 |||||||||||||||||||||||||||||||||||||||||||||||||||| | | | Sbjct 61 CAGAACATCGTCGAGAACGATCCTTCTCTCTCCCACCATCTCCACCACCACCA--AGATT 118 Query 188 ctctccaAATATTTACCAGATTCGCAGCCATGGCAAGATTTTCACTCCCGTCACTCCTCC 247 ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 119 -TCTCCAACTATTCACCAAATTCGCAGCCATGGCAAGATTTTCACTCCCGTCACTCCTCC 177 Query 248 GGAAAATTCTTCAAGGAAAGAAGGTATCTGTTGAAGGAATTTCCTGAATTAGTTTCTTGT 307 || |||||||||||||||||||||||| ||||||||||||| || || |||||||||||| Sbjct 178 GGCAAATTCTTCAAGGAAAGAAGGTATTTGTTGAAGGAATTCCCCGAGTTAGTTTCTTGT 237 Query 308 GGAGAGAACTCAAAACTTTTGGAAATTGGTTGTGGTAATGGCAGTACCGTGCTTCCGATT 367 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 238 GGAGAGAACTCAAAACTTTTGGAAATTGGTTGCGGTAATGGCAGTACTGTGCTTCCGATT 297 Query 368 TTACGTGGAAGCAAGAACATTACTGTGTATGCTTGTGATTGTAGCAGTGACGCTCTTGTT 427 |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| Sbjct 298 TTACGTGGAAGCAAGAACATTACTGTATATGCTTGTGATTGTAGCAGTGAGGCCCTTGTT 357 Query 428 AGGACTAAAGAGAACATTGATCGCGCTATTTCTTCGGTTGATAACTTTCATTCTTTTTGT 487 |||||||||||||||||||||||||||||| || ||||||||||| |||||||| || Sbjct 358 AGGACTAAAGAGAACATTGATCGCGCTATTGATTTAGTTGATAACTTCCATTCTTTCTGC 417 Query 488 TGTGACTTTTCGACTTCTGAGTTTCC-AGATTGGGTGGCATGTGATCGTTGTCGAGACAA 546 |||||||||||||| ||||||||||| | ||||||| ||||||||||||||||||||||| Sbjct 418 TGTGACTTTTCGACGTCTGAGTTTCCTA-ATTGGGTCGCATGTGATCGTTGTCGAGACAA 476 Query 547 GTTTATGCTTAACCACTCAGG 567 ||||||| ||||||| ||||| Sbjct 477 GTTTATGGTTAACCATTCAGG 497 Score = 636 bits (344), Expect = 0.0 Identities = 372/386 (96%), Gaps = 0/386 (0%) Strand=Plus/Plus Query 588 AACATTGCATCGGTGGGGTGGATTTTGTCACTCTGATATTTACATTGTCGGCAGTGCCTA 647 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 AACATTGCATCGGCGGGGTGGATTTTGTCACTCTGATATTTACATTGTCGGCAGTGCCTA 601 Query 648 AAGAAAGAATGCCGAGAGCTATCAAGGAATGCTTTGCTGTGCTGAAACCTGGTGGTCTGC 707 ||||||| ||||||||||||||||||||||| ||| ||||||||||| | |||||||||| Sbjct 602 AAGAAAGGATGCCGAGAGCTATCAAGGAATGTTTTTCTGTGCTGAAAGCGGGTGGTCTGC 661 Query 708 TCTTATTTAGAGATTATGGATTATATGACATGACTATGCTACGGTTTGAGCCAGAGAAAC 767 |||| || |||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 662 TCTTGTTCAGAGATTACGGCTTATATGACATGACTATGCTACGGTTTGAGCCAGAGAAAC 721 Query 768 GTGTAGGATTTAGGGAATATGTGCGGTCTGATGGAACCCTTTCCTATTTCTTTTGTCTCG 827 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 722 GTGTAGGATTTAGGGAATATGTGCGGTCCGATGGAACCCTTTCCTATTTCTTTTGTCTCG 781 Query 828 ACACTGCCAGGAAACTATTTACTGATGCTGGATTCATTGAGGTTGAGCTTGAATATTGTT 887 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 782 ACACTGCCAGGAAACTATTTACTGATGCTGGATTCATTGAGGTTGAGCTTGAATATTGTT 841 Query 888 GTGTCAAAGCAGTAAACCGGAGAAAGGGTAAGGACATGTACCGAGTTTGGGTTCATGGGA 947 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 842 GTGTCAAAGCAGTAAACCGGAGAAAGGGTAAGGAAATGTACCGAGTTTGGGTTCATGGGA 901 Query 948 AGTTCCAAAAGCCCTTCTCTAATTAA 973 |||||||||||||||| | ||||||| Sbjct 902 AGTTCCAAAAGCCCTTGTATAATTAA 927 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44336952471 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5