BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54650.2
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914827 jgi|Araly1|914827|Al_scaffold_0001_5081 737 0.0
> Ahg914827 jgi|Araly1|914827|Al_scaffold_0001_5081
Length=927
Score = 737 bits (399), Expect = 0.0
Identities = 468/501 (93%), Gaps = 5/501 (1%)
Strand=Plus/Plus
Query 68 ATGGAGAAAAGAGAAGAAGCAGGAGAGTATCATTCCAAAGATTTCGAATGGGAATTTCTC 127
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAAAGAGACGAAGCAGGAGAGTATCATTCCAAAGATTTCGAATGGGAATTTCTC 60
Query 128 AAGAACATCGTCGAGAACGATCCTtctctctcccaccatctccaccaccaccaccaaaat 187
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 61 CAGAACATCGTCGAGAACGATCCTTCTCTCTCCCACCATCTCCACCACCACCA--AGATT 118
Query 188 ctctccaAATATTTACCAGATTCGCAGCCATGGCAAGATTTTCACTCCCGTCACTCCTCC 247
||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 119 -TCTCCAACTATTCACCAAATTCGCAGCCATGGCAAGATTTTCACTCCCGTCACTCCTCC 177
Query 248 GGAAAATTCTTCAAGGAAAGAAGGTATCTGTTGAAGGAATTTCCTGAATTAGTTTCTTGT 307
|| |||||||||||||||||||||||| ||||||||||||| || || ||||||||||||
Sbjct 178 GGCAAATTCTTCAAGGAAAGAAGGTATTTGTTGAAGGAATTCCCCGAGTTAGTTTCTTGT 237
Query 308 GGAGAGAACTCAAAACTTTTGGAAATTGGTTGTGGTAATGGCAGTACCGTGCTTCCGATT 367
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 238 GGAGAGAACTCAAAACTTTTGGAAATTGGTTGCGGTAATGGCAGTACTGTGCTTCCGATT 297
Query 368 TTACGTGGAAGCAAGAACATTACTGTGTATGCTTGTGATTGTAGCAGTGACGCTCTTGTT 427
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 298 TTACGTGGAAGCAAGAACATTACTGTATATGCTTGTGATTGTAGCAGTGAGGCCCTTGTT 357
Query 428 AGGACTAAAGAGAACATTGATCGCGCTATTTCTTCGGTTGATAACTTTCATTCTTTTTGT 487
|||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||
Sbjct 358 AGGACTAAAGAGAACATTGATCGCGCTATTGATTTAGTTGATAACTTCCATTCTTTCTGC 417
Query 488 TGTGACTTTTCGACTTCTGAGTTTCC-AGATTGGGTGGCATGTGATCGTTGTCGAGACAA 546
|||||||||||||| ||||||||||| | ||||||| |||||||||||||||||||||||
Sbjct 418 TGTGACTTTTCGACGTCTGAGTTTCCTA-ATTGGGTCGCATGTGATCGTTGTCGAGACAA 476
Query 547 GTTTATGCTTAACCACTCAGG 567
||||||| ||||||| |||||
Sbjct 477 GTTTATGGTTAACCATTCAGG 497
Score = 636 bits (344), Expect = 0.0
Identities = 372/386 (96%), Gaps = 0/386 (0%)
Strand=Plus/Plus
Query 588 AACATTGCATCGGTGGGGTGGATTTTGTCACTCTGATATTTACATTGTCGGCAGTGCCTA 647
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 AACATTGCATCGGCGGGGTGGATTTTGTCACTCTGATATTTACATTGTCGGCAGTGCCTA 601
Query 648 AAGAAAGAATGCCGAGAGCTATCAAGGAATGCTTTGCTGTGCTGAAACCTGGTGGTCTGC 707
||||||| ||||||||||||||||||||||| ||| ||||||||||| | ||||||||||
Sbjct 602 AAGAAAGGATGCCGAGAGCTATCAAGGAATGTTTTTCTGTGCTGAAAGCGGGTGGTCTGC 661
Query 708 TCTTATTTAGAGATTATGGATTATATGACATGACTATGCTACGGTTTGAGCCAGAGAAAC 767
|||| || |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TCTTGTTCAGAGATTACGGCTTATATGACATGACTATGCTACGGTTTGAGCCAGAGAAAC 721
Query 768 GTGTAGGATTTAGGGAATATGTGCGGTCTGATGGAACCCTTTCCTATTTCTTTTGTCTCG 827
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 722 GTGTAGGATTTAGGGAATATGTGCGGTCCGATGGAACCCTTTCCTATTTCTTTTGTCTCG 781
Query 828 ACACTGCCAGGAAACTATTTACTGATGCTGGATTCATTGAGGTTGAGCTTGAATATTGTT 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 ACACTGCCAGGAAACTATTTACTGATGCTGGATTCATTGAGGTTGAGCTTGAATATTGTT 841
Query 888 GTGTCAAAGCAGTAAACCGGAGAAAGGGTAAGGACATGTACCGAGTTTGGGTTCATGGGA 947
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 842 GTGTCAAAGCAGTAAACCGGAGAAAGGGTAAGGAAATGTACCGAGTTTGGGTTCATGGGA 901
Query 948 AGTTCCAAAAGCCCTTCTCTAATTAA 973
|||||||||||||||| | |||||||
Sbjct 902 AGTTCCAAAAGCCCTTGTATAATTAA 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44336952471
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5