BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54660.1
Length=3037
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348000 jgi|Araly1|348000|fgenesh1_pg.C_scaffold_5001392 652 0.0
> Ahg348000 jgi|Araly1|348000|fgenesh1_pg.C_scaffold_5001392
Length=1674
Score = 652 bits (353), Expect = 0.0
Identities = 369/377 (98%), Gaps = 0/377 (0%)
Strand=Plus/Plus
Query 866 GATGTGTTTAACAACTTCAAGAATAAGGATGGAAAGTTCAAGGAGCACCTAGCTGAGGAT 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GATGTGTTTAACAACTTCAAGAATAAGGATGGAAAGTTCAAGGAGCACCTAGCTGAGGAT 459
Query 926 GCAAGAGGTCTTTTATGCCTTTATGAAGCTGCACATTGGAGCACCCATGGTGAAGACATT 985
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 460 GCAAGAGGTCTTTTATGCCTTTATGAAGCTGCACATTGGAGCACCCATGGCGAAGACATT 519
Query 986 CTCGATGAAGCTCTTGCTTTCTCTAGGTCTCATTTGGAAGGACTGGCTGATCAATCTAGT 1045
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 520 CTCGATGAAGCTCTTGCTTTCTCTAGGTATCATTTGGAAGGACTGACTGATCAATCTAGT 579
Query 1046 CCACCTATGTCCATCCGCATTAAAAATGCCCTCAAACATGCATACCCTAGGGGTATATCA 1105
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 CCACATATGTCCATCCGCATTAAAAATGCCCTCAAACATGCATACCCTAGGGGTATATCA 639
Query 1106 AGGATAGAGACACGACAATATATCTCATACTATGAAGAAGAAGATCTGCACGACCAAACC 1165
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 AGGATAGAGACACGGCAATATATCTCATACTATGAAGAAGAAGATCTGCACGACCAAACC 699
Query 1166 TTGCTAGAATTTGCTAAGATAGATTTCAATCTTCTGCAAATTTTGCACCGCAAAGAGCTT 1225
||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 700 TTGCTTGAATTTGCTAAGATAGATTTCAATCTTCTGAAAATGTTGCACCGCAAAGAGCTT 759
Query 1226 TGCCAAGTCTTCAGGTG 1242
|||||||||||||||||
Sbjct 760 TGCCAAGTCTTCAGGTG 776
Score = 536 bits (290), Expect = 3e-151
Identities = 339/361 (94%), Gaps = 9/361 (2%)
Strand=Plus/Plus
Query 1337 AGGTGGTACTCAAATCTAGAGCTCGACTTGAAAGTACCATATGCAAGGAATAGGACTGTC 1396
||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 772 AGGTGGTACTCAAGTCTAGAGCTAGACTTGAAACTACCATATGCAAGGAATAGGACTGTC 831
Query 1397 GAAAGCTACTTGTGGGCTGTTGGAGCATACTT-TGAGCCCCGATATTCTCAAGCAAGGAT 1455
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 832 GAAAGCTACTTGTGGGCTGTTGGAGCATA-TTCCGAGCCCCGATATTCTCAAGCAAGGAT 890
Query 1456 TAGATTGGCCATTGTTGTTATCTTATTGACTCTTGTTGATGATACGTACGATGCATTTGG 1515
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 891 TAGATTGGCCATTGTTGTTATCTTATTGACTCTTGTTGATGATACATACGATGCATATGG 950
Query 1516 CACGATTGAGGAACTCGAACCATTT-CA--T---T-GATTATGTGGAATCCTAGCGGCAT 1568
||||||||||||||||||||||||| || | | ||||||||||||| ||||||||||
Sbjct 951 CACGATTGAGGAACTCGAACCATTTACAAATGCATTGATTATGTGGAATTCTAGCGGCAT 1010
Query 1569 AGAAGGGCTCCCGGAGAGCATGAGGTATCTTCATCATGTGGTGTTAGATTTCTACGGAAA 1628
|||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||
Sbjct 1011 AGAAGGGCTCCCGGAGAGTATGAAGTATCTTCATCATGTGGTGTTAGATTTCTATGGAAA 1070
Query 1629 ACTTGAGGAGGATATGGAGAGGGAAGGAAGGTCAGGATGCGGCCTTTTCGCTAAAAAATC 1688
||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||
Sbjct 1071 ACTTGAGGAGGATATGGAGAGGGAAGGCAGGTCCGGATGCGGCCTTCTCGCTAAAAAATC 1130
Query 1689 G 1689
|
Sbjct 1131 G 1131
Score = 453 bits (245), Expect = 3e-126
Identities = 282/299 (94%), Gaps = 5/299 (2%)
Strand=Plus/Plus
Query 2742 TGC-AGTTTGAACATAAGAGAAAGCACGTAGGAACATCCATTGATTGTTACATGAAGCAA 2800
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1375 TGCGAGTTTGAACATAAGAGAAAGCACGTAGGAACATCCATTGATTGTTATATGAAGCAA 1434
Query 2801 TATGGTATTTCATGGGAAAAAGCCGAAGAAGAGATCAAAATCATGGCATTGGATTCATGG 2860
| |||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1435 TTTGGTGTTTCATGGGAAAACGCGGAAGAAGAGATCAAAATCATGGCATTGGATTCATGG 1494
Query 2861 AAGAGTCTTAATCAAGAACTGATGACGAGAGATCACTCTTTTGCTTTCCCTATCGTCATG 2920
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1495 AAGAGTCTTAATCAAGAACTTATGACGAGAGATCACTCTTTTCCTTTCCCTATCGTCATG 1554
Query 2921 CGATTCCTAAACCTCTCGAGGGTCGTC-AAGGTTTTGTACAAAGACACTGACATTTTTAC 2979
||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||| ||
Sbjct 1555 CGATTCCTAAACCTCTCGAGGGTCGTCGAAG-TTTTCTACAAAGACACAGACATTTTCAC 1613
Query 2980 ACATCCTGAGTTGATGAAACATCACGTGGTTTCTTTATTCCTTAACA-GAATATCTATT 3037
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1614 GTATCCTGAGTTGATGAAACATCACGTGGTTTCTTTATTCCTTAACAAGA-TATCTATT 1671
Score = 451 bits (244), Expect = 1e-125
Identities = 269/281 (96%), Gaps = 1/281 (0%)
Strand=Plus/Plus
Query 192 GGAGAGTGAGATAAACGAAGAGAAGCTGAGTTCACTAAAGGAAACCGTAAGAGGATTGTT 251
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 120 GGAGAGTGAGATAAACGAAGAGAAGCTGAGTTCACTAAAGGAAACCGTAAGAGAATTGTT 179
Query 252 AATGGCTTCAAAAGAAGAGCCGATAGAGAACATCAAATTCATTGATGCTCTTTGTCGCCT 311
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 AATGGCTTCAAAAGAAGAGCCGATAGAGAACATCAAATTAATTGATGCTCTTTGTCGCCT 239
Query 312 TGGTGTTTCCTACCACTTTGAAGTAGACATCTTCACGCAGTTAGAGACGATGTTTGGT-G 370
|||| | |||||||||||||||| ||| |||||| ||||||||||||||||||||||| |
Sbjct 240 TGGTATCTCCTACCACTTTGAAGGAGAAATCTTCGCGCAGTTAGAGACGATGTTTGGTTG 299
Query 371 TCATGGTTTTATGCAGATGATAAGAGGCAATGAGTTCGATTTATACACCGTCTCCCTCGT 430
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||
Sbjct 300 TCATGGTTTTATGCAGATGATAAGAGACAATGAGTTCGATTTATACACCGTCTCTCTTGT 359
Query 431 CTTCCAAATTTTTAGACAATTTGGCTATAAACTTGGTGTCG 471
||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 CTTCCAAGTTTTTAGACAATTTGGCTATAAACTTGGTGTCG 400
Score = 446 bits (241), Expect = 6e-124
Identities = 254/260 (98%), Gaps = 1/260 (0%)
Strand=Plus/Plus
Query 1808 TAATAAATCAGATGATTGTAACTGCTAAAGCCTATCTTCAAGAGGCAAAATGGTTGAGTG 1867
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 TAAAAAATC-GATGATTGTAACTGCTAAAGCCTATCTTCAAGAGGCAAAATGGTTGAGTG 1180
Query 1868 AAGACTTTGTGGCAACATTTGACGAGTACAAAGAGAACGGAGTTTATTCATCGAGCTACT 1927
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1181 AAGACTATGTGGCAACATTTGACGAGTACAAAGAAAACGGAGTTTATTCATCGAGCTACT 1240
Query 1928 TAGCTCTGTTAACAGGATCCTTTCTAGGGATGGTGGATGAAGGCACCCTTGATGTGTTTG 1987
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1241 TAGCTCTGTTAACAGGATCCTTTCTAGGAATGGTGGATGAAGGCACACTTGATGTGTTTG 1300
Query 1988 AATGGTTAAGCACTTTCCCACCCCTTCTTGTGACTTCTGCACTAATAGGCCGTCTCTGTG 2047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 AATGGTTAAGCACTTTCCCACCCCTTCTTGTGACTTCTGCACTAATAGGCCGTCTCTGTG 1360
Query 2048 GTGACATTGCTAGTTGCGAG 2067
||||||||||||||||||||
Sbjct 1361 GTGACATTGCTAGTTGCGAG 1380
Score = 117 bits (63), Expect = 5e-25
Identities = 76/82 (93%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 1 AAGAAA-TATATCGGCCATTAGCGGATTTTCCGGTGAATATATGGGAAGATCCCTTGATC 59
|||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 41 AAGAAATTA-ATCGGCCATTAGCCGATTTTCCGGTGAATATATGGGAAGATCCCTTGATC 99
Query 60 TCTTTTTCTGTTTTGGATCCGG 81
|||||| ||||||| || ||||
Sbjct 100 TCTTTTCCTGTTTTAGACCCGG 121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114689727695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5