BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54690.1
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947885 jgi|Araly1|947885|scaffold_704114.1 701 0.0
Ahg337754 jgi|Araly1|337754|fgenesh1_pg.C_scaffold_1004319 590 6e-168
Ahg919635 jgi|Araly1|919635|scaffold_100916.1 486 9e-137
Ahg950114 jgi|Araly1|950114|scaffold_802001.1 259 2e-68
> Ahg947885 jgi|Araly1|947885|scaffold_704114.1
Length=469
Score = 701 bits (379), Expect = 0.0
Identities = 432/458 (94%), Gaps = 1/458 (0%)
Strand=Plus/Plus
Query 62 AATTTCCCGATAAACAAAAAATGAGTTCCGGCGCCGGCAGTGGAACAACTAAAGGTGGCA 121
||||| |||||||| |||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1 AATTTTCCGATAAATAAAAGATGAGTTCCGGCGCCGGCAGTGGAACAACCAAAGGAGGCA 60
Query 122 GAGGAAAGCCAAAAGCTACAAAGTCCGTCTCTCGATCTTCTAAAGCTGGTCTTCAATTTC 181
|||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 61 GAGGAAAGCCGAAAGCTACAAAGTCCGTTTCTCGATCGTCTAAAGCTGGTCTTCAGTTTC 120
Query 182 CCGTTGGAAGAATCGCTAGATTCCTTAAAGCCGGTAAATACGCCGAACGTGTTGGTGCCG 241
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 121 CCGTTGGAAGAATCGCTAGATTCCTTAAAGCCGGAAAATACGCTGAACGTGTTGGTGCCG 180
Query 242 GTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAGGTATTGGAGCTAG 301
||||||| |||||||||||||||||||| || ||||||||||||||| |||||||||| |
Sbjct 181 GTGCTCCGGTTTATCTCTCCGCCGTTCTTGAGTACCTCGCCGCTGAGCTATTGGAGCTTG 240
Query 302 CTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATCGTACCACGGCACATTCAGCTTG 361
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 CTGGAAATGCGGCAAGAGATAACAAGAAGACACGTATCGTACCACGACACATTCAGCTTG 300
Query 362 CAGTGAGGAACGATGAAGAGCTTAGTAAACTTCTTGGAAGTGTAACAATTGCTAATGGAG 421
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 CAGTGAGAAACGATGAAGAGCTTAGTAAACTTCTTGGAAGTGTAACAATCGCTAATGGAG 360
Query 422 GAGTTTTGCCCAACATTCATCAGACTCTTCTCCCATCAAAGGTTGGAAAGAACAAAGGCG 481
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 361 GAGTTTTGCCTAACATTCATCAGACACTTCTCCCATCAAAGGTTGGGAAGAACAAAGGCG 420
Query 482 ATATCGGATCTGCTTCTCAAGAGttttaatt-ttattt 518
|||||||||| |||||||||||||||| ||| ||||||
Sbjct 421 ATATCGGATCCGCTTCTCAAGAGTTTTGATTCTTATTT 458
> Ahg337754 jgi|Araly1|337754|fgenesh1_pg.C_scaffold_1004319
Length=630
Score = 590 bits (319), Expect = 6e-168
Identities = 364/386 (94%), Gaps = 1/386 (0%)
Strand=Plus/Plus
Query 82 ATGAGTTCCGGCGCCGGCAGTGGAACAACTAAAGGTGGCAGAGGAAAGCCAAAAGCTACA 141
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 1 ATGAGTTCCGGCGCCGGCAGTGGAACAACCAAAGGAGGCAGAGGAAAGCCGAAAGCTACA 60
Query 142 AAGTCCGTCTCTCGATCTTCTAAAGCTGGTCTTCAATTTCCCGTTGGAAGAATCGCTAGA 201
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 AAGTCCGTTTCTCGATCGTCTAAAGCTGGTCTTCAGTTTCCCGTTGGAAGAATCGCTAGA 120
Query 202 TTCCTTAAAGCCGGTAAATACGCCGAACGTGTTGGTGCCGGTGCTCCCGTTTATCTCTCC 261
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 121 TTCCTTAAAGCCGGAAAATACGCTGAACGTGTTGGTGCCGGTGCTCCGGTTTATCTCTCC 180
Query 262 GCCGTTCTCGAATACCTCGCCGCTGAGGTATTGGAGCTAGCTGGAAATGCAGCAAGAGAT 321
|||||||| || ||||||||||||||| |||||||||| ||||||||||| |||||||||
Sbjct 181 GCCGTTCTTGAGTACCTCGCCGCTGAGCTATTGGAGCTTGCTGGAAATGCGGCAAGAGAT 240
Query 322 AACAAGAAGACACGTATCGTACCACGGCACATTCAGCTTGCAGTGAGGAACGATGAAGAG 381
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 241 AACAAGAAGACACGTATCGTACCACGACACATTCAGCTTGCAGTGAGAAACGATGAAGAG 300
Query 382 CTTAGTAAACTTCTTGGAAGTGTAACAATTGCTAATGGAGGAGTTTTGCCCAACATTCAT 441
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 301 CTTAGTAAACTTCTTGGAAGTGTAACAATCGCTAATGGAGGAGTTTTGCCTAATATTCAT 360
Query 442 CAGACTCTTCTCC-CATCAAAGGTTG 466
||||| ||||||| |||||||| |||
Sbjct 361 CAGACACTTCTCCTCATCAAAGTTTG 386
> Ahg919635 jgi|Araly1|919635|scaffold_100916.1
Length=470
Score = 486 bits (263), Expect = 9e-137
Identities = 373/427 (87%), Gaps = 4/427 (1%)
Strand=Plus/Plus
Query 82 ATGAGTTCCGGCGCCGGCAGTGGAACAACTAAAGGTGGCAGAGGAAAGCCAAAAGCTA-C 140
|||||| | ||||| || || |||||||| |||||||||||||| |||||||| || | |
Sbjct 22 ATGAGTACAGGCGCAGGAAGCGGAACAACCAAAGGTGGCAGAGGGAAGCCAAAGGCCACC 81
Query 141 AAAGTCCGTCTCTCGATCTTCTAAAGCTGGTCTTCAATTTCCC-GTTGGAAGAATCGCTA 199
||| ||||||||||| || || ||||| ||||||||| ||||| || ||||||||||| |
Sbjct 82 AAA-TCCGTCTCTCGTTCGTCCAAAGCCGGTCTTCAA-TTCCCAGTCGGAAGAATCGCCA 139
Query 200 GATTCCTTAAAGCCGGTAAATACGCCGAACGTGTTGGTGCCGGTGCTCCCGTTTATCTCT 259
||||||| |||||||||||||||||||| ||||| |||||||| ||||| || |||||||
Sbjct 140 GATTCCTCAAAGCCGGTAAATACGCCGAGCGTGTCGGTGCCGGAGCTCCGGTCTATCTCT 199
Query 260 CCGCCGTTCTCGAATACCTCGCCGCTGAGGTATTGGAGCTAGCTGGAAATGCAGCAAGAG 319
|||| |||||||| ||||||||||||||||| |||||||| || ||||| |||||||| |
Sbjct 200 CCGCTGTTCTCGAGTACCTCGCCGCTGAGGTGTTGGAGCTTGCGGGAAACGCAGCAAGGG 259
Query 320 ATAACAAGAAGACACGTATCGTACCACGGCACATTCAGCTTGCAGTGAGGAACGATGAAG 379
||||||||||||| ||||| |||||| | || ||||||||||||||||||||||||||||
Sbjct 260 ATAACAAGAAGACGCGTATAGTACCAAGACATATTCAGCTTGCAGTGAGGAACGATGAAG 319
Query 380 AGCTTAGTAAACTTCTTGGAAGTGTAACAATTGCTAATGGAGGAGTTTTGCCCAACATTC 439
|||| ||||||||||| |||||||| || ||||| |||||||| |||||||| || || |
Sbjct 320 AGCTGAGTAAACTTCTGGGAAGTGTGACGATTGCGAATGGAGGTGTTTTGCCTAATATAC 379
Query 440 ATCAGACTCTTCTCCCATCAAAGGTTGGAAAGAACAAAGGCGATATCGGATCTGCTTCTC 499
||||||||||| | || || |||||||| ||||||||||| ||||| |||||||||||||
Sbjct 380 ATCAGACTCTTTTGCCTTCCAAGGTTGGCAAGAACAAAGGAGATATTGGATCTGCTTCTC 439
Query 500 AAGAGtt 506
| |||||
Sbjct 440 AGGAGTT 446
> Ahg950114 jgi|Araly1|950114|scaffold_802001.1
Length=434
Score = 259 bits (140), Expect = 2e-68
Identities = 247/298 (83%), Gaps = 10/298 (3%)
Strand=Plus/Plus
Query 163 AAAGCTGGTCTTCAATTTCCCGTTGGAAGAATCGCTAGATTCCTT-AAAGCCGGTAAATA 221
|||||||||||||||||||| || || | |||||| |||| ||| ||||||||||||||
Sbjct 85 AAAGCTGGTCTTCAATTTCCGGTGGGTCGTATCGCTCGATT-CTTGAAAGCCGGTAAATA 143
Query 222 CGCCGAACGTGTTGGTGCCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGC 281
|||||||||||||||||| |||||||| || |||||| |||||||||| || || | ||
Sbjct 144 CGCCGAACGTGTTGGTGCTGGTGCTCCGGTCTATCTCGCCGCCGTTCTTGAGTATTTGGC 203
Query 282 CGCTGAGGTA-TTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATCG 340
||| ||||| ||| | ||||||| || ||||||||||| ||||||||||||||||| |
Sbjct 204 CGCCGAGGTTCTTGAAT-TAGCTGGGAACGCAGCAAGAGACAACAAGAAGACACGTATTG 262
Query 341 TACCACGGCACATTCAGCTTGCAGTGAGGAACGATGAAGAGCTTAGTAAACTTCTTGGA- 399
| || || || |||||||| || || || |||||||| ||||| || || |||||||||
Sbjct 263 TTCCTCGTCATATTCAGCTCGCTGTTAGAAACGATGAGGAGCTAAGCAAGCTTCTTGGAG 322
Query 400 AGTGTAACAATTGCTAATGGAGGAGTTTTGCCCAACATTCATCAGA-CTC-TTCTCCC 455
| ||| || ||||||||||||||||| |||| ||||| || || | ||| |||||||
Sbjct 323 A-TGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCA-CA-ATCTCCTTCTCCC 377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29583383592
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5