BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G54700.1

Length=914
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474746 jgi|Araly1|474746|fgenesh2_kg.1__4700__AT1G54710.1         640    0.0  
  Ahg951775 jgi|Araly1|951775|scaffold_15900004.1                      305    3e-82


> Ahg474746 jgi|Araly1|474746|fgenesh2_kg.1__4700__AT1G54710.1
Length=3323

 Score =  640 bits (346),  Expect = 0.0
 Identities = 388/408 (95%), Gaps = 3/408 (1%)
 Strand=Plus/Minus

Query  507   TTACAGGCTATGGGATGTATTCTTCTTACCTTCTTCGGAGAAAGCGAAAACACCACCAAG  566
             |||| || ||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct  3105  TTACGGGATATGGGATGGATTCTTTTTACCTTCTTCGGAGAAAGCGAAAACACCACCAAG  3046

Query  567   CATGTCATCGTCCTCATCATCATCGAGTTTTCCATCAGATGGAGCATCCTTATGCTCAGT  626
             ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3045  CATGTCATCCTCGTCATCATCATCGAGTTTTCCATCAGATGGAGCATCCTTATGCTCAGT  2986

Query  627   TTCTGTAACAGTTTCATTGGAGACCACCTCCTCGAAAAACTGCTCGAAGTTTGGGGAGCC  686
             ||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct  2985  TTCTGTAACAGTTTCATTGGAGATCACCTCCTTGAAAAACTGCTCGAAATTTGGGGAGCC  2926

Query  687   GTCAATGGGTCCTTCACCCTCGTCTGCTGCATTCATGCTCATATCAGAACGGTTAGAACT  746
              ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct  2925  ATCAATGGGTCCTTCACCCTCGCCAGCTGCATTCATGCTCATATCAGAACGGTTAGAACT  2866

Query  747   TACATTTGAATCTCCACTTATCCCACTGCTGTTTTCAATTTTTGTTTCAGCGGGCAGGGA  806
             |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct  2865  TACATTTGAATCTCCACTTATCCCGCTGCTGTTTTCAATTCTTGTTTCAGCGGGCAGGGA  2806

Query  807   GGCGTTCTTTGGCAAGACATGAGCGTCGTCGTCTATATAATCAGTGTCTTTCACAGCAGA  866
             || |||||||||||||| |||||||||||| |  ||||||||||||||||||||||||||
Sbjct  2805  GGTGTTCTTTGGCAAGAGATGAGCGTCGTC-T--ATATAATCAGTGTCTTTCACAGCAGA  2749

Query  867   AGAAATGGAAACTACAGGCTGTTTAAATGTTACAATTCCGGTATGAGG  914
             |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  2748  AGAAATGGAAACTACAGGCTGTTTAAATGTTACAATCCCGGTATGAGG  2701


> Ahg951775 jgi|Araly1|951775|scaffold_15900004.1
Length=1370

 Score =  305 bits (165),  Expect = 3e-82
 Identities = 199/216 (92%), Gaps = 0/216 (0%)
 Strand=Plus/Plus

Query  48   GTCGATGAAGAATGCGATGATGCGAAAGTATCTTAAGATGAAGAAGATCATGACCGGTGT  107
            ||| ||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct  672  GTCCATGGAGAATGCGATGATGCGAAAGTATTTTAAGATGAAGAAGATCATGACTGGTGT  731

Query  108  TGTAGTGACTGAGGTCAATCAGCATGCACTTGGTAACCAGTTTGTGAAGAAGAATGACGT  167
            | |||||||| ||  |||||||||| |||  |||||| ||| |||| ||||||| |||||
Sbjct  732  TTTAGTGACTAAGACCAATCAGCATTCACAAGGTAACGAGTATGTGGAGAAGAACGACGT  791

Query  168  CATTCTCGAGATTGATGGTATGACCGTAGAAGATGATGGCAAAGTTTTCTATGAAAACAG  227
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct  792  CATTCTCGAGATTGATGGTATGACCGTAGAAGATGATGGCAAAGTTTTTTATGAAAGCAG  851

Query  228  GTTGTGGATGCACTTAAATGGTTTCATTGCTTTGAA  263
            ||||||||||||||||||||||||||||||||||||
Sbjct  852  GTTGTGGATGCACTTAAATGGTTTCATTGCTTTGAA  887



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33891273213


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5