BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54710.1
Length=3335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474746 jgi|Araly1|474746|fgenesh2_kg.1__4700__AT1G54710.1 4708 0.0
> Ahg474746 jgi|Araly1|474746|fgenesh2_kg.1__4700__AT1G54710.1
Length=3323
Score = 4708 bits (2549), Expect = 0.0
Identities = 2923/3100 (94%), Gaps = 39/3100 (1%)
Strand=Plus/Plus
Query 1 aaaaagcaaacccaaaaaaaaaaaaaaaacagaaac-c--aaaaaaaaGCAAAGAACCGT 57
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1 AAAAAGCAAACCCAAAAAAAAAAAAAAAACAGAAACACAAAAAAAAAAGCAAAGAACCGT 60
Query 58 ttcttctccatcatcatcatcatctt--cttcg-cttcttcttcttcttcCGTGAAGAAG 114
||||||| |||| ||||| || |||| ||||| ||||||||||||||||||||||||||
Sbjct 61 TTCTTCTTCATCTTCATCTTCTTCTTCGCTTCGTCTTCTTCTTCTTCTTCCGTGAAGAAG 120
Query 115 GTCAAAAAACACACCACCGCTTAACCCCAATTAC---CAAAAAATGGCAAAGCTTCAAAA 171
||| |||||||||||||||||||| ||||||||| ||||||||||||||||||| ||
Sbjct 121 GTC-AAAAACACACCACCGCTTAA-CCCAATTACAAAAAAAAAATGGCAAAGCTTCACAA 178
Query 172 TTTCTCAAATTAAACAATCTC-TTTACTTA-TT---CTTCTTCTTCGAAATCGCCGCCGG 226
|| |||||||||||||||||| |||| ||| || ||||||||||| ||||||||||||
Sbjct 179 TTCCTCAAATTAAACAATCTCTTTTAGTTATTTCCCCTTCTTCTTCGTAATCGCCGCCGG 238
Query 227 CTTATGCTGTTTCCGATCGTTGTCTCTTCTCCGGTGTATCTCCGGTGGTATCTTCCACGA 286
|||||||||||||||| |||| | |||||||||||||||||||||| ||| ||||||
Sbjct 239 CTTATGCTGTTTCCGA---TTGT-T-ATCTCCGGTGTATCTCCGGTGGTCTCTCCCACGA 293
Query 287 AGAATTCATAATTACTATGAAGAGTAACTCCAAGGTCAACATCAACAACAACGGAGATAA 346
|||| ||||||||||||||||| |||||| | || || |||||||||||||||
Sbjct 294 CTAATTTATAATTACTATGAAGAGCAACTCC-A----AA-AT---CAACAACGGAGATAA 344
Query 347 TCATAATCAAACGAAGAATAATGGTACTAATGGCTTTTTGCCCAATTCGTTAAAATTCAT 406
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 345 TCATAATCAAACGAAGAATAATGGTACTAATGGCTTTTTGCCTAATTCGTTAAAATTCAT 404
Query 407 CTCTACTTGCATCAGAACTGCTTCCTCCGGTGTTCGCTCAGCTAGCGCCTCCGTCGCTGC 466
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 405 CTCTACTTGTATCAGAACTGCTTCTTCCGGTGTTCGCTCAGCTAGCGCCTCCGTCGCTGC 464
Query 467 TTCCCTCTCTTCTGATTCTCACGAGCTTAAAGATCAGGTGTTGTGGTCTTCATTTGATAG 526
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 465 TTCTCTCTCTTCTGATTCTCATGAGCTTAAAGATCAGGTGTTGTGGTCTTCATTTGATAG 524
Query 527 ATTGCACACAAGTGAATCATCTTTCAAGAACGTTCTATTACTAGGTTATACAAACGGGTT 586
||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 525 ATTACACACAAGTGAATCTTCTTTCAAGAACGTTCTTTTACTAGGTTATACGAACGGGTT 584
Query 587 TCAAGTTCTTGATATCGATGATTCAAATGATGTTACCGAATTCGTGTCGAGGCGGGATGA 646
|||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||
Sbjct 585 TCAAGTTCTTGATATCGATGATGCAAGTGATGTTACCGAATTTGTGTCGAGGCGGGATGA 644
Query 647 TCCGGTTACATTTTTACAGATGCAGCCATTACCTGCTAAATGTGATGGAGTTGAAGGGTT 706
||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 645 TCCGGTTACGTTTTTACAGATGCAGCCATTACCTGCCAAATGTGATGGTGTTGAAGGTTT 704
Query 707 TAGATCATCACATCCTATACTTTTAGCTGTTGCTGATGAAGCTAAAGGTTCAGGTCCTAT 766
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 705 TAGATCATCACATCCTATACTTTTAGCTGTTGCTGATGAGGCTAAAGGTTCAGGTCCTAT 764
Query 767 TGTTACTAGTAGAGATGGATCTGTTAGAAATGGTTATGAGGATCCTCTTGCACTCTCTCC 826
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 765 TGTTACTGGTAGAGATGGATCGGTTAGAAATGGTTATGAGGATCCTCTTGCACTCTCTCC 824
Query 827 CACGGTTGTGCGATTTTATTCGCTTAGATCGCATAACTATGTTCATGTTTTGAGGTTTAG 886
|||||||||||| || ||||||||| |||| ||||||||||||||||||||||| ||| |
Sbjct 825 CACGGTTGTGCGGTTCTATTCGCTTCGATCTCATAACTATGTTCATGTTTTGAGATTTCG 884
Query 887 ATCTACTGTTTATATGGTTAGATGCAGTCCTCGGATTGTCGCTGTTGGCCTCGGTTCGCA 946
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 885 ATCTACTGTTTATATGGTTAGATGCAGTCCTCGGATTGTCGCTGTTGGCCTTGGTTCGCA 944
Query 947 GATATATTGTTTTGATGCGCTAACTCTTGAAAACAAATTCAGTGTCCTCTCGTATCCTGT 1006
|||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 945 GATATATTGTTTTGATGCTCTAACTCTTGAAAACAAATTCAGCGTCCTTTCGTATCCTGT 1004
Query 1007 ACCTCAGCTTGGAAACCAAGGGATATCTGGGGTTAATGTTGGATATGGTCCAATGGCTGT 1066
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1005 ACCTCAGCTTGGAAACCAAGGGATATCTGGGGTTAATGTCGGATATGGTCCAATGGCTGT 1064
Query 1067 CGGGGCTAGATGGTTAGCGTATGCTTCCAATAGTCCCTTGTCTTCTAGTATAGGTCGTCT 1126
||| ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1065 CGGACCTAGATGGTTAGCTTATGCTTCCAATAGTCCTTTGTCATCTAGTATAGGTCGTCT 1124
Query 1127 GAGCCCTCAGAATGTTACTCCTCCTGGTGTCAGTCCATCTACCTCGCCAAATAATGGTAA 1186
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1125 GAGCCCTCAGAATGTTACTCCTCCTGGGGTCAGTCCATCTACCTCGCCAAGTAATGGTAA 1184
Query 1187 TCTGGTGGCAAGATACGCTATGGAATCTAGTAAGCATTTGGCAGCTGGGTTACTCAATTT 1246
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1185 TCTAGTGGCAAGATACGCCATGGAATCTAGTAAGCATTTGGCAGCTGGGTTACTCAATAT 1244
Query 1247 GGGTGACAAGGGTTACAAAACTATATCTAAATACTGTCAAGATCTCAAGCATGACGGTCC 1306
|||||||||| ||| |||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1245 GGGTGACAAGAGTTTCAAAACTATAACTAAATACTGTCAAGATCTCAAGCATGATGGTCC 1304
Query 1307 TGGTCCTTCTCTTTCGTCCAGCCCTGGCCGGAAAGTTGGTCGGGTCGGTTCTCATTCAGC 1366
||||||||||||||||||||| ||||||||||||||||||||| | | |||||||||||
Sbjct 1305 TGGTCCTTCTCTTTCGTCCAGTCCTGGCCGGAAAGTTGGTCGGCTTGCATCTCATTCAGC 1364
Query 1367 TGAGTCAGATGTTGTTGGAACGGTAATTGTCAAAGATTTTGAGTCCCGAGCTATTATAGC 1426
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 AGAGTCAGATGTTGTTGGAACGGTAATTGTCAAAGATTTTGAGTCCCGAGCTATTATAGC 1424
Query 1427 ACAATTCAGGGCTCACACTAGTCCAATCTCTGCTCTCTGTTTCGACCCTAGTGGCACTTT 1486
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
Sbjct 1425 ACAATTCAGGGCTCACACTAGTCCAATTTCTGCTCTCTGTTTCGACCCAAGTGGCACTCT 1484
Query 1487 ACTAGTAACAGCCTCAATCCACGGTAACAATATTAACGTTTTCCGGATTATGCCGACACC 1546
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1485 ACTAGTAACAGCCTCAATCCACGGTAACAATATTAACGTTTTCCGGATTATGCCGTCACC 1544
Query 1547 TACAAAGAATGGACCGGGTGCTCAAAGCTATGATTGGAGCTCTTCCCATGTGCCTCTTTA 1606
||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1545 TACAAAGAATGGAACAGGTGCTCAAAGCTATGATTGGAGCTCCTCCCATGTGCCTCTTTA 1604
Query 1607 CAAACTACATCGTGGCATGACATCAGCTGTGATACAAGATATTTGCTTTAGTAGCTACAG 1666
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1605 CAAACTACATCGTGGCATGACATCAGCTGTAATACAAGATATTTGTTTTAGTAGCTACAG 1664
Query 1667 TCAGTGGATTGCAATTGTTTCATCTAAGAGCACCTGCCATATTTATGTTTTATCCCCGTT 1726
|||||||||||||||||| ||||||||| ||||||||||||| |||||||| || |||||
Sbjct 1665 TCAGTGGATTGCAATTGTATCATCTAAGGGCACCTGCCATATCTATGTTTTGTCTCCGTT 1724
Query 1727 CGGGGGAGAAAATGTTCTTGAAATACGAAACTCTCAATTCGATGGACCGACGCTTGCTCC 1786
||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 1725 CGGCGGAGAAAATGTTCTTGAAATACGAAACTCTCAATTTGATGGACCAACACTTGCTCC 1784
Query 1787 AACATTATCCCTGCCATGGTGGTCAAGTCCGTCGTTTATGACCACCCATTTTTCATATCC 1846
|||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1785 AACATTGTCCCTGCCGTGGTGGTCGAGTCCATCGTTTATGACCACCCATTTTTCATATCC 1844
Query 1847 ACCACCAGCGTCAGTTACTCTTTCTGTGGTTAGCCGAATCAAATGCAACAATTTCTTCCA 1906
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 ACCCCCAGCGTCGGTTACTCTTTCTGTGGTTAGCCGAATCAAATGCAACAATTTCTTCCA 1904
Query 1907 TGCTGCAAGTTCCGTTGTAGGAAAACCCACCTTCCCCTCTGGCTGTCTTGCTGCTGTTTT 1966
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1905 TGCTGCAAGTTCCGTTGTAGGAAAACCGACCTTCCCCTCTGGCTGTCTTGCTGCTGTTTT 1964
Query 1967 CCATCAATCTGTGCCACAAGAATCGCAGTCGTCATCTCCTGCCTTGGACTACTTACTGGT 2026
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1965 CCATCAATCTGTGCCACATGAATCGCAGTCGTCATCTCATGCCTTGGACTACTTACTGGT 2024
Query 2027 TTACACTCCATCAGGTCATGTAGTTCAATACAAACTCATTCCATCTCTTGGAGGAGACCA 2086
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2025 TTACACCCCATCAGGTCATGTAGTTCAATACAAACTCATTCCATCTCTTGGAGGAGACCA 2084
Query 2087 GGCTGAGAGCAATACGCGAAATGGAGCAACTTCTGGGCTGACCTCTGAAGAGGAACTGAG 2146
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2085 GGCTGAGAGCAATACGCGAAATGGAGCAACTTCTGTACTGACTTCTGAAGAGGAACTGAG 2144
Query 2147 AGTGAAAGTTGAACCAGTTCAGTGTTGGGATGTCTGTCGAAGAGCGGATTGGCCAGAGAG 2206
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2145 AGTGAAAGTTGAACCAGTTCAGTGTTGGGATGTCTGTCGAAGAGCTGATTGGCCAGAGAG 2204
Query 2207 GGAGGAGAACATATGCGGGCTTACTTATGGTGGACGAAAAAATGCTGAGTTAACTGTTGA 2266
|||||||||||||| ||||||||||||||||||||||| | ||| ||| ||| |||||
Sbjct 2205 AGAGGAGAACATATGTGGGCTTACTTATGGTGGACGAAACATTGCAGAGCAAACCGTTGA 2264
Query 2267 TACTTCTGATAGTGAAGATC-AAACAAAGCCTCTGGAGAAACACCATGTTTATCTTGCCA 2325
||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 2265 TACCTCTGATAGTGAAGA-CTTAACAAAGCCTCTGGAGAAACACCATGTTTATCTTGCCA 2323
Query 2326 ATGCAGAGGTGCTGATAAACTCCGGAAGAAAACCAATCTGGCAAAATTCAGAGATATCTT 2385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2324 ATGCAGAGGTGCTGATAAACTCCGGAAGAAAACCAATCTGGCAAAATTCAGAGATATCCT 2383
Query 2386 TCTATCCGATGTATCCACCAGACTCTGATGGCAAGAACCTGAATTCGCATCAAGGTGGTG 2445
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2384 TCTATCCGATGTTTCCACCAGACTCTGATGGCAAGAACCTGAATTCGCATCAAGGTGGTG 2443
Query 2446 GGGAGACAGAAATCGGGAAAGTATCTGCGAACGAGGTTGACATTAGGCGAAAGGATCTT- 2504
||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| ||
Sbjct 2444 GGGAGACAGAAATCGGGAAAGTATCAGCGAATGAGGTTGACATTAGGCGGAAGGAT-TTG 2502
Query 2505 CTGCCGGTATATGATAATTTTCACAGTGTGTATACCAGTATGCGCAACAGAGGATTTTCT 2564
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2503 CTGCCGGTGTATGATAATTTTCACAGTGTGTATACCAGTATGCGCAACAGAGGATTTTCT 2562
Query 2565 GGGGAAAGAGATTCAGATTCTTCTTCTTCTTCTGA-CCCTGGACAAGTTAAAGAAATGCA 2623
| |||||||||||||||||| |||||||||| || ||| ||||||||||||||||| ||
Sbjct 2563 GCGGAAAGAGATTCAGATTCAACTTCTTCTTCAGATCCC-GGACAAGTTAAAGAAATTCA 2621
Query 2624 TCCATTCAATGGTATGGTTTACCCCGAAGATGAGGAAAGAAGAGGGAGTGCCCATTTTGC 2683
||||||||||||||||| ||||||||| |||| |||||| ||||| ||||||||||||||
Sbjct 2622 TCCATTCAATGGTATGGCTTACCCCGAGGATGTGGAAAGTAGAGGAAGTGCCCATTTTGC 2681
Query 2684 ACTAACTCCAAACCAAAATCCTCATACCGGAATTGTAACATTTAAACAGCCTGTAGTTTC 2743
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2682 ACTAACTCCAAAACAAAATCCTCATACCGGGATTGTAACATTTAAACAGCCTGTAGTTTC 2741
Query 2744 CATTTCTTCTGCTGTGAAAGACACTGATTATATAGACGACGACGCTCATGTCTTGCCAAA 2803
||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct 2742 CATTTCTTCTGCTGTGAAAGACACTGATTATATAGACGACG-C--TCATCTCTTGCCAAA 2798
Query 2804 GAACGCCTCCCTGCCCGCTGAAACAAAAATTGAAAACAGCAGTGGGATAAGTGGAGATTC 2863
|||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 2799 GAACACCTCCCTGCCCGCTGAAACAAGAATTGAAAACAGCAGCGGGATAAGTGGAGATTC 2858
Query 2864 AAATGTAAGTTCTAACCGTTCTGATATGAGCATGAATGCAGCAGACGAGGGTGAAGGACC 2923
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 2859 AAATGTAAGTTCTAACCGTTCTGATATGAGCATGAATGCAGCTGGCGAGGGTGAAGGACC 2918
Query 2924 CATTGACGGCTCCCCAAACTTCGAGCAGTTTTTCGAGGAGGTGGTCTCCAATGAAACTGT 2983
|||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||||||||
Sbjct 2919 CATTGATGGCTCCCCAAATTTCGAGCAGTTTTTCAAGGAGGTGATCTCCAATGAAACTGT 2978
Query 2984 TACAGAAACTGAGCATAAGGATGCTCCATCTGATGGAAAACTCGATGATGATGAGGACGA 3043
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2979 TACAGAAACTGAGCATAAGGATGCTCCATCTGATGGAAAACTCGATGATGATGACGAGGA 3038
Query 3044 TGACATGCTTGGTGGTGTTTTCGCTTTCTCCGAAGAAGGT 3083
||||||||||||||||||||||||||||||||||||||||
Sbjct 3039 TGACATGCTTGGTGGTGTTTTCGCTTTCTCCGAAGAAGGT 3078
Score = 326 bits (176), Expect = 8e-88
Identities = 212/227 (93%), Gaps = 11/227 (5%)
Strand=Plus/Plus
Query 3082 GTTGAGTTTAGTTAAA-CTATGGCCAAAGAAAGCTCTAATGGAGAAGGGGTCACATACTA 3140
|||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||
Sbjct 3106 GTTGAGTTTAGTTAAATCTATGGCC----AAAGCTCTAATGGAGAAGGGGTCACTTACTA 3161
Query 3141 ATCCCGTTTGCTGCAACTTTTACTCACTGATGATCTTTAATACCCTGAAAAAATAACATT 3200
||||||||||||||||| |||||||||||||||| ||||| ||||||||||| ||| ||
Sbjct 3162 ATCCCGTTTGCTGCAAC--TTACTCACTGATGATC-TTAATTCCCTGAAAAAAAAACTTT 3218
Query 3201 TAAAATCAATTTCTTTTATCATCTGTTTCTGTAAATGCTTGTAAATGTAA-TGTTCATTA 3259
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 3219 TAAAATCAATTTCTTTTATCATCTGTTTCTGTAAATGCTTGTAAATG-AATTGTTCATTA 3277
Query 3260 TCAACAGTCTCTCGATTTCCATGGACTGTTTCTTTGTAATCtttttt 3306
|||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3278 TCAACAGTCTCTCGATTTCCATGGACTGTTTCTTTGTAAT-TTTTTT 3323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125894451484
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5