BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54740.1
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924226 jgi|Araly1|924226|scaffold_105507.1 928 0.0
> Ahg924226 jgi|Araly1|924226|scaffold_105507.1
Length=817
Score = 928 bits (502), Expect = 0.0
Identities = 686/772 (89%), Gaps = 24/772 (3%)
Strand=Plus/Plus
Query 51 ctctctctctTGTTACCAAGATGAGCTTCTACAAAAGAAGCTTTCACTCTTTCCTTGGCC 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTCTCTTGTTACCAAGATGAGCTTCTACAAAAGAAGCTTTCACTCTTTCCTTGGCC 60
Query 111 AAACCAACACCAAAGGGATGCCGTTTGAATCCGGTCTTGGCCATGATGAGACACAATCAC 170
|||||||||||||| |||||||||||||||||||||||||||||| ||| | |
Sbjct 61 AAACCAACACCAAAACGATGCCGTTTGAATCCGGTCTTGGCCATGACGAG--GC---GA- 114
Query 171 ATGGCTTAATGTTGTGCACAGAGTATCTAGGGTTTGAGAGTTACGACATGAGGATGTCCG 230
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 115 ATGGTTTAATGTTGTGTACAGAGTATCTAGGGTTCGAGAGTTACGACATGAGAATGTCCG 174
Query 231 ATAACGAGGTGGAGAACAAGATGACTTGTCATGCGGAGGTGGAGACCGAAAGGGTTGAAG 290
|||||||||||||||| |||||||||||||| | |||||||||||||||||||| |||
Sbjct 175 ATAACGAGGTGGAGAATAAGATGACTTGTCACGTAGAGGTGGAGACCGAAAGGGTCGAAA 234
Query 291 CAAAGAGGAGGAAGACGAAGGAGAATGTGGTGGTGC-A-AGCGCAGAAAAAACAGTTTCC 348
||||||||||||||| ||||||||||||||||| || | ||| | | ||||| |||||||
Sbjct 235 CAAAGAGGAGGAAGATGAAGGAGAATGTGGTGGCGCGAGAGC-CGGGAAAAA-AGTTTCC 292
Query 349 TCCGCCTCTCTCGTCATTAAACAGCCGTGGACAGCGATATTTTTATCTCCGTCCGGTGAG 408
||||||||||||||| || ||| |||| ||||| || | |||||||||||| ||||||||
Sbjct 293 TCCGCCTCTCTCGTCGTTGAACGGCCGAGGACAACGGTCTTTTTATCTCCGGCCGGTGAG 352
Query 409 AAAAGACGGTAGATTGGAACTTACGCAAGTTATGGTCGATCGACCAGAGATTTTCCACGT 468
|| || ||||||||||||||||||||||| ||| || |||||||||||||||| || |
Sbjct 353 GAAGGATGGTAGATTGGAACTTACGCAAGTAATGATCAATCGACCAGAGATTTTTCATGC 412
Query 469 TTCTAGAGTAGATGGACGGTTGAGATTACATTTTGTCGATGGTGTCGAGAATCCCATTAG 528
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 413 TTCTAGAGAAGATGGACGGTTAAGATTACATTTTGTCGATGGTGTCGAGAATCCCATAAG 472
Query 529 AGCTTATTCTGGTCCTC-AAGAAATTGTGGCCTTAGAAGAGGAACCTAAGGGTCTAGGTA 587
|| || || |||||| | ||||||| || ||||||||||| ||||||||||||||||||
Sbjct 473 AGGTTGTTGTGGTCC-CGAAGAAATCGTTGCCTTAGAAGACGAACCTAAGGGTCTAGGTC 531
Query 588 ATGAGAAAGAGGGAGGGGAGATTAGTAGATCTGATCTGGAATGTGGTAGAGAGATTAATG 647
||||||| |||||||||||||| ||||||||||||||| |||| |||| |||||||| ||
Sbjct 532 ATGAGAACGAGGGAGGGGAGATAAGTAGATCTGATCTGAAATGGGGTACAGAGATTATTG 591
Query 648 AAGACGACAATGATGGTGCATGTAATCAAG-GAATGGATTTATCTATAATCAGTGATGAT 706
|||| |||||||||||||||||| || ||| | ||||||||||||| |||| |||||
Sbjct 592 AAGATGACAATGATGGTGCATGTGATGAAGTGG-TGGATTTATCTATGATCA---ATGAT 647
Query 707 AGTGGTGCAAGAA-GTTGGAGATGTAAAAGTAGTCATGATGTTTCGGTGAATAGTAATAA 765
|| ||||| || ||||||||||||| | ||||||||| ||||||||||||||| ||||
Sbjct 648 -GT--TGCAA-AACGTTGGAGATGTAATACTAGTCATGAGGTTTCGGTGAATAGTGATAA 703
Query 766 TGATGTTGCACATTTCCATGATGACCATGACACGAGAGAATGGATGTA-CAA 816
|||||||||||||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 704 TGATGTTGCACATTTCCATGATGATCATGACACGAGAGAATGGA-GTAACAA 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45480639981
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5