BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54770.1
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489677 jgi|Araly1|489677|fgenesh2_kg.6__2811__AT5G30495.2 835 0.0
Ahg914837 jgi|Araly1|914837|Al_scaffold_0001_5091 285 4e-76
Ahg891116 jgi|Araly1|891116|Al_scaffold_0007_3102 95.3 7e-19
> Ahg489677 jgi|Araly1|489677|fgenesh2_kg.6__2811__AT5G30495.2
Length=824
Score = 835 bits (452), Expect = 0.0
Identities = 683/786 (87%), Gaps = 49/786 (6%)
Strand=Plus/Plus
Query 143 AGAACAAAGGCAATTTACAATAATGGCAGAGACTAAACAACCACTGATCGGTCTTAAATG 202
|||||||||||| |||| | | |||||||||||| | ||||| |||| ||||| |||||
Sbjct 43 AGAACAAAGGCAGTTTAGAGTTATGGCAGAGACT--A-AACCATTGATTGGTCTAAAATG 99
Query 203 GGAACCAAAGCTTCCAGGCTTATCCTTAGACTTGAAAACTGGTT-C-----AA-C----- 250
|||||||||||||||||||||||||||||||| || |||||||| | || |
Sbjct 100 GGAACCAAAGCTTCCAGGCTTATCCTTAGACTCGACAACTGGTTCCAGTTTAAGCAAAAG 159
Query 251 --CAGA-AG-CA--AAA-CA----G--CTGAGAGT-TCTAAGTCAGAGCTTGTTGATGGT 296
| || || || ||| || | ||| || | ||||||||||||||||| ||||||
Sbjct 160 AGCTGAGAGTCACGAAAGCAGTTCGCTCTG-GA-TGTCTAAGTCAGAGCTTGTCGATGGT 217
Query 297 CTTTGTCTTCCACCTAATGATCCAAGGAAGATTAACAAGATGATTAGAAAACAACTCAAA 356
||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||
Sbjct 218 CTTTGTCTTCCACCTAATGATCCAAAGAAGATTAACAAGATGATTAGGAAACAAGTCAAA 277
Query 357 GACACTACTGGTTCTAACTGGTTTGATATGCCTGCTCCAACAATGACTCCTGAGTTGAAA 416
|| || |||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 278 GATACCACTGGTTCAAACTGGTTTGATATGCCTGCACCAACAATGACTCCTGAGTTAAAA 337
Query 417 AGAGATCTTCAGTTGCTTAAGTTGAGAACTGTAATGGATCCTGCTCTACACTACAAGAAA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 AGAGATCTTCAGTTGCTTAAGTTGAGAACTGTAATGGATCCTGCTCTACACTACAAGAAA 397
Query 477 TCTGTGTCACGGTCTAAACTAGCTGAAAAATATTTCCAGATTGGTACAGTAATTGAACCA 536
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 398 TCTGTGTCACGGTCAAAACTAGCTGAAAAATATTTCCAGATTGGAACAGTAATTGAACCA 457
Query 537 GCTGAAGAGTTTTATGGGAGATTGACAAAGAAGAATAGAAAAGCAACTCTTGCTGATGAG 596
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 458 GCTGAAGAGTTCTATGGAAGATTAACAAAGAAGAATAGAAAAGCAACTCTTGCTGATGAG 517
Query 597 TTGGTTTCAGATCCTAAAACTGCTCTCTACAGGAAGCGTAAAGTTAGGGAGATTGAGGAG 656
||||| |||||||| |||||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 518 TTGGTGTCAGATCCCAAAACTTCTCAGTACAGGAAGCGTAAAGTTAAGGAGATTGAGGAG 577
Query 657 AAGAGTAGAGCTGTTACGAATAAGAAATGGAATAAAAAGGGAAACCAGTCTAAGAACACA 716
||||||||||||||||| |||||||| ||||| |||||||||||||| || ||||||| |
Sbjct 578 AAGAGTAGAGCTGTTACAAATAAGAAGTGGAAGAAAAAGGGAAACCAATCCAAGAACAAA 637
Query 717 AAGCCAAGAAGGAACTGAATTATTTTTGTTAAGAGTATGATCATAGTTTTGGGACACATT 776
|||| ||||||||||||| ||| |||||||| || |||||||||||||| |||| |||||
Sbjct 638 AAGCAAAGAAGGAACTGATTTACTTTTGTTA-GAATATGATCATAGTTT-GGGATACATT 695
Query 777 TTTTCTATTTTTAATAGAATATGG-TCATAGTATTG-GATACACTTTCTTGCGGTGATAT 834
||| || |||| | |||||||| | ||||||||| | || |||||||||| |||| |||
Sbjct 696 TTT-CTGTTTTGATTAGAATATTGATCATAGTATCGTGACACACTTTCTTTTGGTGCTAT 754
Query 835 AGGTT-----------GTAATGACTCTTGTTG-TTTATGGCCTTTGTTTAAAGGATTTTG 882
|| || ||||||||| |||||| ||||||| ||| ||||||||||||| |
Sbjct 755 AGATTCACATTACCTTGTAATGACTGTTGTTGGTTTATGGGCTTCGTTTAAAGGATTT-G 813
Query 883 TGTTAT 888
||||||
Sbjct 814 TGTTAT 819
> Ahg914837 jgi|Araly1|914837|Al_scaffold_0001_5091
Length=207
Score = 285 bits (154), Expect = 4e-76
Identities = 178/190 (94%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 545 GTTTTATGGGAGATTGACAAAGAAGAATAGAAAAGCAACTCTTGCTGATGAGTTGGTTTC 604
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 18 GTTCTATGGGAGATTGACAAAGAAGAATAGAAAAGCAACTCTTGCCGATGAGTTGGTGTC 77
Query 605 AGATCCTAAAACTGCTCTCTACAGGAAGCGTAAAGTTAGGGAGATTGAGGAGAAGAGTAG 664
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 78 AGATCCTAAAACTTCTCAGTACAGGAAGCGTAAAGTTAGGGAGATTGAGGAGAAGAGTAG 137
Query 665 AGCTGTTACGAATAAGAAATGGAATAAAAAGGGAAACCAGTCTAAGAACACAAAGCCAAG 724
|||||| ||||||||||||||||| |||||||||||||| || ||||||||||||| ||
Sbjct 138 AGCTGTCACGAATAAGAAATGGAAGAAAAAGGGAAACCAATCCAAGAACACAAAGCAAAC 197
Query 725 AAGGAACTGA 734
||||||||||
Sbjct 198 AAGGAACTGA 207
> Ahg891116 jgi|Araly1|891116|Al_scaffold_0007_3102
Length=423
Score = 95.3 bits (51), Expect = 7e-19
Identities = 69/77 (90%), Gaps = 4/77 (5%)
Strand=Plus/Plus
Query 171 GAGACTAAACAACCACTGATCGGTCTTAAATGGGAACCAAAGCTTCCAGGCTTATCCTTA 230
|||||||||| | | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 7 GAGACTAAAC-A--ATTGATCGGTCTTAAATGGGAACCAAAGCTTCTAGGCTTATCCTTA 63
Query 231 -GACTTGAAAACTGGTT 246
||| |||||||||||
Sbjct 64 AGACCCGAAAACTGGTT 80
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34386871134
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5