BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54790.2
Length=1328
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474754 jgi|Araly1|474754|fgenesh2_kg.1__4708__AT1G54790.2 1382 0.0
> Ahg474754 jgi|Araly1|474754|fgenesh2_kg.1__4708__AT1G54790.2
Length=1205
Score = 1382 bits (748), Expect = 0.0
Identities = 852/903 (94%), Gaps = 4/903 (0%)
Strand=Plus/Plus
Query 13 AAACAACATAGCGAGAGTTCATGAATATAACTAAGATGAAACTCTTCTATGTGATCCTAT 72
|||||||| | ||||| ||||||||||||||||||||||| |||| ||||| |||||||
Sbjct 1 AAACAACAAATAGAGAGCTCATGAATATAACTAAGATGAAAATCTTTTATGTCATCCTAT 60
Query 73 TTTTTATCAGT-TCT-TTACAGATTTCAAACTCCATCGATTTCAATTATCCGTCTGCTTT 130
|||||||| | | | || |||| |||||||||||| |||||| ||||||||||||||||
Sbjct 61 ATTTTATCA-TGTATATT-CAGAATTCAAACTCCATTGATTTCGATTATCCGTCTGCTTT 118
Query 131 TAATTTCGGAGATTCCAATTCTGATACCGGTGATCTTGTTGCTGGCCTTGGCATTCGTCT 190
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 119 TAATTTCGGAGATTCCAATTCTGATACCGGTGATCTCGTTGCTGGCCTTGGCATTCGTCT 178
Query 191 AGACCTTCCTAACGGACAAAATTCCTTCAAAACTTCATCCCAAAGATTCTGCGATGGACG 250
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TGACCTTCCGAATGGACAAAATTCCTTCAAAACTTCATCCCAAAGATTCTGCGATGGACG 238
Query 251 TCTTGTTATAGATTTTCTAATGGATGAAATGGACCTGCCATTTTTAAATCCATATTTGGA 310
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 239 TCTTGTTATAGATTTTCTAATGGATGAAATGGACCTGCCATTTTTAAATCCTTATTTGGA 298
Query 311 TTCATTAGGTTTACCAAATTTCAAAAAAGGGTGTAACTTTGCAGCAGCAGGATCCACAAT 370
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 299 TTCATTAGGTCTACCAAATTTCAAAAAAGGGTGTAACTTTGCAGCAGCAGGATCCACCAT 358
Query 371 TCTTCCCGCAAACCCGACCTCGGTCTCTCCTTTCTCCTTTGATCTTCAAATCTCTCAATT 430
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 359 TCTTCCCGCAAACCCGACCTCGGTCTCTCCTTTCTCTTTTGATCTTCAAATCTCTCAATT 418
Query 431 CATCCGGTTCAAATCTAGGGCCATTGAATTACTTTCTAAAACAGGAAGGAAATATGAAAA 490
|||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||| ||
Sbjct 419 CATCCGGTTCAAATCTAGGGCCCTTGAACTACTTTCTAAAACAGGAAGAAAATATGATAA 478
Query 491 GTACTTACCACCAATTGATTATTATTCAAAAGGATTATACATGATTGACATAGGCCAAAA 550
||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||||||||
Sbjct 479 GTACTTACCACCACTTGATTATTACTCAGAAGGACTATACATGATTGACATAGGCCAAAA 538
Query 551 TGATATAGCTGGTGCCTTCTACTCCAAGACTCTTGACCAAGTTCTTGCCTCTATTCCTTC 610
|||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 539 TGATTTAGCTGGTGCCTTCTACTCCAAGACTCTTGACCAAGTTCTTGCTTCGATTCCTTC 598
Query 611 CATTCTTGAAACTTTTGAAGCTGGCCTCAAGAGGCTTTATGAGGAAGGAGGCAGAAACAT 670
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 599 CATTCTTGAAACTTTTGAAGCTGGACTCAAGAGGCTTTATGAGGAAGGAGGCAGAAACTT 658
Query 671 TTGGATACACAACACAGGGCCTTTAGGATGTTTAGCTCAAAATATTGCCAAGTTTGGGAC 730
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 659 TTGGATACACAACACACGGCCTTTAGGATGTTTGGCTCAAAATATTGCCAAGTTTGGGAC 718
Query 731 AGATTCAACAAAACTTGATGAGTTTGGTTGCGTTAGTTCCCATAACCAAGCAGCTAAGCT 790
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 719 AGATTCAACAAAGCTTGATGAGTTTGGTTGTGTTAGTTCCCATAACCAAGCAGCCAAACT 778
Query 791 TTTCAATCTTCAACTCCATGCTATGTCCAACAAATTTCAAGCTCAATACCCTGATGCAAA 850
|||||||||||||| |||||| ||||||||||||||||||| |||| ||||||| |||
Sbjct 779 CTTCAATCTTCAACTACATGCTCTGTCCAACAAATTTCAAGCCCAATTCCCTGATTCAAG 838
Query 851 TGTTACTTACGTTGACATCTTCTCTATTAAATCTAATCTCATCGCTAATTATTCCCGATT 910
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGTTACTTACGTTGATATCTTCTCTATTAAATCTAATCTCATCGCTAATTATTCCCGATT 898
Query 911 TGG 913
|||
Sbjct 899 TGG 901
Score = 442 bits (239), Expect = 3e-123
Identities = 272/288 (94%), Gaps = 1/288 (0%)
Strand=Plus/Plus
Query 986 TTTAGGCTTCGAAAAACCGTTAATGGCGTGTTGTGGAGTCGGAGGGGCGCCATTAAATTA 1045
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TTT-GGCTTCGAAAAACCATTAATGGCGTGTTGTGGAGTCGGAGGGGCGCCATTAAATTA 955
Query 1046 CGATAGTCGCATTACATGTGGCCAAACTAAAGTCTTAGATGGGATATCAGTAACAGCCAA 1105
||||| |||||| | ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 956 CGATAACCGCATTTCTTGTGGGCAAACTAAAGTCTTAGATGGGATATCAGTAACTGCCAA 1015
Query 1106 AGCTTGCAACGATAGTTCCGAGTACATAAACTGGGATGGAATTCATTATACCGAAGCCGC 1165
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1016 AGCTTGCAACGACAGTTCCGAGTACATAAACTGGGATGGAATTCACTATACCGAAGCCGC 1075
Query 1166 AAACGAGTTCGTCTCATCTCAAATCTTAACCGGAAAATATTCCGATCCACCGTTTTCAGA 1225
|||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1076 AAACCAGTTCGTCTCATCTCAAATCTTAACCGGGAAGTATTCCGATCCACCGTTTTCAGA 1135
Query 1226 TCAAATGCCATTTTTTCTAACCTTGAAATTTTAAACAATGCCGTTACA 1273
|||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct 1136 TCAAATGCCATTTTTTCTAAGCTTAAAATTTTAAACAATGCTGTTACA 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49674160851
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5