BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54820.1
Length=1531
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914843 jgi|Araly1|914843|Al_scaffold_0001_5097 1960 0.0
> Ahg914843 jgi|Araly1|914843|Al_scaffold_0001_5097
Length=1383
Score = 1960 bits (1061), Expect = 0.0
Identities = 1251/1342 (93%), Gaps = 16/1342 (1%)
Strand=Plus/Plus
Query 104 ACCATCATCTATCATCCC-G-G-AGCCACGAGCAAAAC-CAGCGTGGCCTAATTTCGATA 159
||||||||| |||||||| | | | |||||||| ||| | || ||||||||||||||||
Sbjct 44 ACCATCATCCATCATCCCAGAGTATCCACGAGCGGAACTC-GCATGGCCTAATTTCGATA 102
Query 160 AATGCCATAATCATCATTGGCATCTCCATTATCTCCATATTCATAATCCTTGCAATTCTC 219
|||||||| |||||||| || |||||||| |||||||| ||||||||| |||||||||||
Sbjct 103 AATGCCATGATCATCATCGGAATCTCCATCATCTCCATCTTCATAATCTTTGCAATTCTC 162
Query 220 CTAATAATCATTTTACTTCATCGACTTAAATCCGCAAGAGTCAAAGCACAAGAATTATCT 279
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 163 TTAATAATCCTTTTACTTCATCGACTTAAATCCGCAAGAGAAAAAGCACAAGAATTATCT 222
Query 280 TGCAAAGAAAGCTTCAACAACATGAACAATGGTGGAGCTTCCACCAACTACAGCTACACT 339
| |||||||||||||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct 223 TCCAAAGAAAGCTTCAACAACATGAACAATGGTGGAACTTCGACTAACTACAGCTACACT 282
Query 340 TCTAGCCCTGATGACATCAAGAGAGATTGTCTATACTCAAGAAACCCAACATCGTTCAGA 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 TCTAGCCCTGATGACATCAAGAGAGATTGTCTATACTCAAGAAACCCAACATCGTTCAGA 342
Query 400 CAATTACCCCCACAGACAAAAAGTTGTAGGAGAAGCCGAGCCGAAGGAGTAGAAGTGTAC 459
||| | || | ||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 343 CAACTGCCTCAACAAACAAAAAGTTGTAGAAGAAGCCGAGCAGAAGGAGTAGAAGTGTAC 402
Query 460 ACATACAAGGAATTAGAGATTGCAACAAATAATTTCAGCGAGGAGAAGAAAATCGG-A-- 516
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
Sbjct 403 ACATACAAGGAATTAGAGATTGCAACTAATAATTTCAGCGAGGCCAAGAAAATCGGAAGC 462
Query 517 -----A-ATGGAGATGTGTACAAAGGAGTACTAAGTGATGGAACTGTTGCGGCCATTAAA 570
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 463 GGTGGATATGGAGATGTGTACAAAGGAGTACTAAGGGATGGAACTGTTGCGGCCATTAAA 522
Query 571 AAGCTTCATATGTTTAATGATAATGCTAGTAACCAAAAGCATGAAGAACGGTCCTTTAGG 630
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 AAGCTTCATATGCTTAATGATAATGCTAGTAACCAAAAGCATGAAGAACGGTCCTTTAGG 582
Query 631 CTTGAGGTTGATCTTCTTAGTCGATTACAATGCCCATATTTGGTGGAATTACTTGGATAT 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 CTTGAGGTTGATCTTCTTAGTCGATTACAATGCCCATATTTGGTGGAATTACTTGGATAT 642
Query 691 TGTGCAGATCAAAACCATAGGATCCTGATATATGAATTTATGCCTAATGGTACTGTGGAA 750
||||||||||||| ||||||||| ||||||| ||||| ||||||||||||||| |||||
Sbjct 643 TGTGCAGATCAAACCCATAGGATTCTGATATTTGAATATATGCCTAATGGTACACTGGAA 702
Query 751 CATCATCTCCACGATCATAATTTTAAGAATCTAAAGGATCGACCTCAACCATTAGATTGG 810
|||||||| || ||||||| || ||||||||||||||||| | ||||||||||||||||
Sbjct 703 CATCATCTTCATGATCATAGTTGTAAGAATCTAAAGGATCAATTTCAACCATTAGATTGG 762
Query 811 GGAGCTCGGCTTAGGATCGCCCTTGATTGCGCCAGAGCCCTAGAGTTTCTT-CATGAGAA 869
||| | ||||||||||| ||||||||||||||| |||| ||||||||| || || |||||
Sbjct 763 GGAACCCGGCTTAGGATTGCCCTTGATTGCGCCCGAGCTCTAGAGTTT-TTACACGAGAA 821
Query 870 TACAATCTCTACTGTTATCCACCGGAACTTCAAGTGTACCAACATTTTGTTGGATCAAAA 929
|||| |||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 822 TACAGTCTCTACTGTGATCCATCGTAACTTCAAGTGTACCAACATTTTGTTGGATCAAAA 881
Query 930 TAATCGAGCTAAAGTTTCAGATTTCGGATTAGCCAAAACCGGATCCGATAAACTAAACGG 989
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 882 TAATCGAGCTAAAGTTTCAGATTTCGGATTGGCGAAAACTGGATCCGATAAACTAAACGG 941
Query 990 TGAGATTTCAACAAGGGTTATTGGCACCACAGGATATCTTGCTCCAGAGTATGCCTCTAC 1049
||||||||||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 942 GGAGATTTCAACAAGGGTGCTCGGTACCACAGGATATCTTGCTCCAGAGTATGCCTCTAC 1001
Query 1050 TGGAAAGCTTACTACAAAATCAGATGTTTATAGTTATGGTATTGTGTTACTACAACTCTT 1109
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1002 GGGAAAGCTTACCACAAAATCCGATGTTTATAGTTATGGTATTGTGTTACTACAACTCTT 1061
Query 1110 AACGGGTCGCACACCGATCGATTCAAGACGTCCACGGGGACAAGATGTCCTTGTCTCTTG 1169
|||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1062 AACGGGCCGTACACCGATCGATTCAAGGCGTCCGCGGGGACAAGATGTCCTTGTCTCTTG 1121
Query 1170 GGCTCTTCCAAGACTAACCAATAGAGAGAAAATTAGTGAAATGGTGGATCCAACCATGAA 1229
|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1122 GGCTCTTCCAAGGCTAACGAACAGAGAGAAAATTAGTGAAATGGTGGATCCAACCATGAA 1181
Query 1230 AGGTCAATACTCACAAAAAGATCTTATTCAGGTAGCAGCCATAGCAGCAGTGTGTGTGCA 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 AGGTCAATACTCACAAAAAGATCTTATTCAGGTAGCAGCCATAGCAGCAGTGTGTGTGCA 1241
Query 1290 ACCAGAAGCAAGTTATAGACCGTTGATGACGGATGTTGTTCACTCGCTCATTCCCCTTGT 1349
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 ACCAGAAGCAAGTTACAGACCGTTGATGACGGATGTTGTTCACTCGCTCATTCCCCTTGT 1301
Query 1350 TAAAGCTTTCAACAAAAGTACTGATTCTTCTCGGTTTCCTAGCCGTAGAGAAAGCTTGTC 1409
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1302 TAAAGCTTTCAACAAAAGTACTGAATCTTCTCGGTTTCCTAGCCGTAGAGAAAGCTTATC 1361
Query 1410 ATTTGATGATATTATGCCATGA 1431
||||||||||||||||||||||
Sbjct 1362 ATTTGATGATATTATGCCATGA 1383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57325818725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5