BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54830.2
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474760 jgi|Araly1|474760|fgenesh2_kg.1__4714__AT1G54830.1 1070 0.0
Ahg496533 jgi|Araly1|496533|fgenesh2_kg.8__2349__AT5G63470.1 182 6e-45
> Ahg474760 jgi|Araly1|474760|fgenesh2_kg.1__4714__AT1G54830.1
Length=865
Score = 1070 bits (579), Expect = 0.0
Identities = 649/684 (95%), Gaps = 0/684 (0%)
Strand=Plus/Plus
Query 50 AGTTTGGTAGAGAAATGGATCAACAAGGACAATCATCAGCTATGAACTATGGTTCAAACC 109
|||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 182 AGTTTGTTAGTGAAATGGATCAACAAGGACAATCATCAGCTATGAACTACGGTTCAAACC 241
Query 110 CATATCAAACCAACGCCATGACCACTACACCAACCGGTTCAGACCATCCAGCTTACCATC 169
|||| ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 242 CATACCAAACCAACGCCATGACCACTCCACCAGCCGGTTCGGACCATCCAGCTTACCATC 301
Query 170 AGATCCACCAGCAACAACAACAACAGCTCACTCAACAGCTTCAATCTTTCTGGGAGACTC 229
||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct 302 AGATCCACCAGCAACAACAGCAGCAGCTAACTCAACAGCTTCAATCATTCTGGGAGACTC 361
Query 230 AATTCAAAGAGATTGAGAAAACCACTGATTTCAAGAACCATAGCCTTCCATTGGCAAGAA 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 362 AATTCAAAGAGATTGAGAAAACCACTGATTTCAAGAACCATAGCCTTCCATTGGCGAGAA 421
Query 290 TCAAGAAAATCATGAAAGCTGATGAAGATGTGCGTATGATCTCGGCCGAGGCGCCTGTTG 349
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TCAAGAAGATCATGAAAGCTGATGAAGATGTGCGTATGATCTCGGCCGAGGCGCCTGTTG 481
Query 350 TGTTCGCCAGGGCCTGCGAGATGTTTATTCTGGAGCTTACGTTAAGGTCTTGGAACCATA 409
||||||| ||||| || |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 482 TGTTCGCTAGGGCTTGTGAGATGTTTATTCTGGAGCTTACGTTGAGGTCTTGGAACCACA 541
Query 410 CTGAGGAGAACAAGAGAAGGACGTTGCAGAAGAATGATATCGCGGCTGCGGTGACTAGAA 469
||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 542 CTGAGGAGAACAAAAGGAGGACGTTGCAGAAGAACGATATCGCGGCTGCTGTGACTAGAA 601
Query 470 CTGATATTTTTGATTTTCTTGTGGATATTGTTCCTCGGGAGGATCTTCGTGATGAAGTCT 529
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 602 CTGATATCTTTGATTTCCTTGTGGATATTGTTCCGCGGGAGGATCTTCGTGATGAAGTCT 661
Query 530 TGGGTGGTGTTGGTGCTGAAGCTGCTACAGCTGCGGGTTATCCGTATGGATACTTGCCTC 589
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 662 TGGGTGGTGTTAGTGCTGAAGCTGCTACAGCTGCAGGTTATCCGTATGGATACTTGCCTC 721
Query 590 CTGGAACAGCTCCAATTGGGAACCCGGGAATGGTTATGGGTAACCCGGGCGCGTATCCGC 649
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 722 CTGGAACAGCTCCAATTGGGAATCCGGGAATGGTTATGGGTAACCCCGGCGCATATCCGC 781
Query 650 CGAACCCGTATATGGGTCAGCCAATGTGGCAACAACCAGGACCTGAGCAGCAGGATCCTG 709
| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 782 CTAACCCGTATATGGGTCAACCAATGTGGCAACAACAAGGACCTGAGCAGCAGGATCCTG 841
Query 710 ACAATTAGCTTGGCCTAATAAACT 733
| ||||||||| ||||||||||||
Sbjct 842 AGAATTAGCTTTGCCTAATAAACT 865
> Ahg496533 jgi|Araly1|496533|fgenesh2_kg.8__2349__AT5G63470.1
Length=887
Score = 182 bits (98), Expect = 6e-45
Identities = 209/261 (80%), Gaps = 14/261 (5%)
Strand=Plus/Plus
Query 256 GATTTCAAGAACCAT-AGCCTTCCAT-TGGCAAGAATCAAGAAAATCATGAAAGCTGATG 313
|||||||| |||||| || ||||| | | || | ||||| |||||||||||||||||||
Sbjct 225 GATTTCAAAAACCATCAG-CTTCC-TCTAGCTCGGATCAAAAAAATCATGAAAGCTGATG 282
Query 314 AAGATGTGCGTATGATCTCGGCCGAGGCGCCTG-TTGTGTTCGCCAGGGCCTGCGAGATG 372
||||||||||||||||||| ||||| || || | || | ||||||| || || ||| |
Sbjct 283 AAGATGTGCGTATGATCTCCGCCGAAGCACC-GATTCTCTTCGCCAAAGCTTGTGAGCT- 340
Query 373 TTT-ATTCTGGAGCTTACG-TTAAGGTCTTGGAACCATACTGAGGAGAACAAGA-GAAGG 429
||| ||||| ||||||||| ||| | |||||| || |||| |||||||| | | |
Sbjct 341 TTTCATTCTCGAGCTTACGATTA-GATCTTGGCTTCACGCTGAAGAGAACAA-ACGTCGT 398
Query 430 ACG-TTGCAGAAGAATGATATCGCGGCTGCGGTGACTAGAACTGATATTTTTGATTTTCT 488
||| || ||||| || |||||||| |||||| | |||||||| ||||| || ||||| ||
Sbjct 399 ACGCTT-CAGAAAAACGATATCGCTGCTGCGATTACTAGAACCGATATCTTCGATTTCCT 457
Query 489 TGTGGATATTGTTCCTCGGGA 509
||| |||||||||||| ||||
Sbjct 458 TGTTGATATTGTTCCTAGGGA 478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36483631569
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5