BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54840.1
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474763 jgi|Araly1|474763|fgenesh2_kg.1__4717__AT1G54840.1 1413 0.0
> Ahg474763 jgi|Araly1|474763|fgenesh2_kg.1__4717__AT1G54840.1
Length=1207
Score = 1413 bits (765), Expect = 0.0
Identities = 1061/1192 (89%), Gaps = 67/1192 (6%)
Strand=Plus/Plus
Query 1 GTTTCTCTGATGAGAGACAACGAAATTCACTAAGCAGCAACCCTAAATTTACACTCCTGG 60
|||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |||
Sbjct 1 GTTTCTCTGATGAGAGACAACGAAATTCACTAAGTAG-AACCCTAAATTAACACTCATGG 59
Query 61 ATATGAGTGATACAATGCCTGAGATCGTGTCTCCTTTAGTAGCTGAAAACTCTCAAGAAC 120
||||||||||| | | | | || || | | | | |||||||||||||
Sbjct 60 ATATGAGTGAT---A---C--A-A---TG---CC--T-G-A---G--AACTCTCAAGAAC 95
Query 121 AAGAAGA-AAGTGTGTTAATTTCATTGGATATTGAAGAAGACAAGTTGTTTCTCTTACAT 179
||||||| || ||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 96 AAGAAGAGAA-TGTGTTAATTTCATTAGACATTGAAGAAGACAAGTTGTTTCTCTTTCAT 154
Query 180 TTCATCATAGGAACTTACTTTGGACCAGATTTAAGAAAACAACATCATCGTCCAAAGCAA 239
||||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||
Sbjct 155 TTCATCATAGGAACTTACTTTGGACCAGATTTAAG--AA-AGCATCATCGTCCCAAGCAA 211
Query 240 TCAGCTTTTCAGATTCAAGCGTT-GAAGAATGTTGTGGTAGATGAGTTAAGTGGCTCACT 298
||||| |||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 212 TCAGCATTTCAGATTCAAGC-TTCAAAGAATGTCGTGGTAGATGAGTTAAGTGGCTCACT 270
Query 299 TATGAAGAGAGCTGAGCTAGAACGTGTGTATTATCACATTATTAGAAATGTTGATCCGTC 358
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 271 CATGAAGAGAGCTGAGCTAGAACGTGTGTATTATCACATTCTCAGAAATGTTGATCCGTC 330
Query 359 TCTAGTCATGAAGCCGAAAAAGTTACGTGAATATTTCAATGCGAAACGCAATGATTCGAA 418
|||| |||||||| ||||||||||||||||||| ||||||| ||||||||||| ||||||
Sbjct 331 TCTAATCATGAAGTCGAAAAAGTTACGTGAATACTTCAATGGGAAACGCAATGTTTCGAA 390
Query 419 CAGGGATTACCCTCTTTTCGTGGATCTTTTTCCGCGAAAATTGCACCCTGAAACCCATGT 478
|||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 391 TAGGGATTACCCTTTTTTCGCGGATCTTTTTCCGCGAAAACTGCACCCTGAAACCCATGT 450
Query 479 TAGGCATAAGTTTAAGTTTATCCGGAGCATTGTGTTCATTAATGATCCAGATACTTCTTG 538
||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 451 TAGCCATAAGTTTAAGTTTATCAGGAGTATTGTGTTCATTAATGATCCAGATACTTCTTG 510
Query 539 TATGAGAGAAGAATGTGTTGCGCGGTTTAAGCGGCTTACGGGATTGGATAGCTTTGCTTT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 TATGAGAGAAGAATGTGTTGCGCGGTTTAAGCGGCTTACGGGATTGGATAGCTTTGCTTT 570
Query 599 GAGCCTTAGTGTTGATGTAACTAAAAG-TAACGGCGTTGTTGCAGCTAATGAGGTTAAGG 657
|||||||||||||||||||||| || | ||| || | ||||||| || |||||||||||
Sbjct 571 GAGCCTTAGTGTTGATGTAACTGAA-GCTAATGG--T-GTTGCAGTTAGTGAGGTTAAGG 626
Query 658 TTGAGATTGATGAGAGCGTGGAACC-TGTG-A-AAG-----A------G-G-----A-T- 695
||||||||||||| |||||||||| ||| | ||| | | | | |
Sbjct 627 ATGAGATTGATGAGGGCGTGGAACCGTGTTTAGAAGTGCCTATTACATGTGCTGGTAATG 686
Query 696 A--ATGCGGGTACTTGCACTAGCGGTGAAGAAAGTGATGTTGCTGCAAAACCTGAGGTGA 753
| ||||||||||||| |||| |||||||||||||||||||| ||||||||| |||||||
Sbjct 687 ATTATGCGGGTACTTGTACTAACGGTGAAGAAAGTGATGTTGGTGCAAAACCCGAGGTGA 746
Query 754 AATCTGAAGCTCATGGTGGACTAATGGTGGGACTGATGGACATTGGTGAATGTGATGACG 813
|||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 747 CATCTGAAGCTCAGGGTGGACTAATGGCGGGACTGATGGACATTGGTGAATGCGATGATG 806
Query 814 CTTATCTCTTCCGTGTATCGCTTCCTGGTGTGAAAAGAGATGAAAGATATTTTAGCTGTG 873
||||||| ||||||||||||||||| |||||||| |||||||||||| ||||||||||||
Sbjct 807 CTTATCTATTCCGTGTATCGCTTCCCGGTGTGAACAGAGATGAAAGAGATTTTAGCTGTG 866
Query 874 AAGTAGAAGACAATGGGAAGGTACTAGTTAGAGGAGTCACTACAACAGGCGGGAAGCGAG 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 AAGTAGAAGACAATGGGAAGGTACTAGTTAGAGGAGTCACTACAACAGGCGGGAAGCGAG 926
Query 934 TTAAACGGTATTCTCATGTGTTTGAAATGCAAACGCGGAGTCTCTGCCCTCCCGGTAACT 993
|| ||||||||||||| |||||||||||||||||||||| ||||||||| |||||| |||
Sbjct 927 TTCAACGGTATTCTCAGGTGTTTGAAATGCAAACGCGGAATCTCTGCCCGCCCGGTCACT 986
Query 994 TTTCTGTCTCGTTCCGCCTCCCCGGTCCTGTCCATCCACACGAGTTTTCTGGCAACTTTG 1053
||||||||||||| |||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 987 TTTCTGTCTCGTTTCGCCTCCCGGGTCCTGTCCATCCGCAGGAGTTTTCTGGCAACTTTG 1046
Query 1054 GAACAG-ATGGAATTCTTGAAGGAGTCGTAATGAAAAACTTGCAGAAACAAACTGTGTAA 1112
|| || |||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1047 GAG-AGGATGGGATTCTTGAAGGAATCGTAATGAAAAACTTGCAGAAACAAACTGTGTAA 1105
Query 1113 ACGTTTGGTAGTGATATAGGAAGCGTCGGTTTTTGGTTTTGGTTATGGGTAG 1164
| | |||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 1106 TCAAA-G-TAGT--TATAGGAATCGTCGGTTTTTGGTTTTGGTTATAGGTAG 1153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49369177515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5