BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54860.1
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914847 jgi|Araly1|914847|Al_scaffold_0001_5101 898 0.0
> Ahg914847 jgi|Araly1|914847|Al_scaffold_0001_5101
Length=603
Score = 898 bits (486), Expect = 0.0
Identities = 565/604 (94%), Gaps = 2/604 (0%)
Strand=Plus/Plus
Query 198 ATGGTCTTGATTACTAAGATGTCTCTCTCTTTCTACATCATTCATCTTCTCATTTTCTCC 257
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTCTTGATTACGAAGATGTCTCTCTCTTTCTACATCATTCATCTTCTCATTTTCTCC 60
Query 258 TTGATTTCCACTTGTGTTGTCTCCAACCAGGCCGAGGATAATCTTCTTCAAGGCCTAAAC 317
|||||| ||||||||||| ||| ||||||||| |||||||||||||||||||| ||||||
Sbjct 61 TTGATTCCCACTTGTGTTATCTGCAACCAGGCGGAGGATAATCTTCTTCAAGGTCTAAAC 120
Query 318 AGCTACCGAACTGCTCAAAGAGTTCCTCCATTTGCCAAGAATGAGAAGGCTGATTGTGTG 377
||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct 121 AGCTACCGAACTGCTCAAAGAGTTCCTCCTTTTGCAAAGAACGAAAAGGCTGATTGTGTG 180
Query 378 GCTGATGAGATCGCCGACAAGCTCGAAGATCAGCCATGCACAAACCACACCACAGCGAGC 437
|| |||||||||||||||||| | ||||||||||||||||||||||| |||||||| |||
Sbjct 181 GCGGATGAGATCGCCGACAAGTTGGAAGATCAGCCATGCACAAACCATACCACAGCCAGC 240
Query 438 ACGGTTACTCCTGGCTCGGTACCTCCACGGCTGACGAACTACCAGGACATTCTCTCTGAA 497
|||||||||||||||||||| ||||||||| | || |||||||| ||||||||||||||
Sbjct 241 ACGGTTACTCCTGGCTCGGTCCCTCCACGGTTAACAAACTACCAAGACATTCTCTCTGAG 300
Query 498 TGCAAAATCGACCCAAACACTACCCGTGACG-GATTGATCTTACCTGTCTGTATCCCTAA 556
|||||||| || ||||||||||||||||| | | ||||||||||| ||||||||||||||
Sbjct 301 TGCAAAATTGATCCAAACACTACCCGTGATGCG-TTGATCTTACCGGTCTGTATCCCTAA 359
Query 557 CCGGATCCCGACTTTGGCTTTAACTAATTACACCCAAACTGGTTATGCTCGGTATCTTAA 616
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 CCGGATCCCTACTTTGGCTTTAACTAATTACACCCAAACTGGTTATGCTCGGTATCTAAA 419
Query 617 TGATTCGAGGTATGTCGGGGCTGGTGTTGGGTCGGAGAAAGAGTGGATGGTGGTTGTATT 676
||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||
Sbjct 420 TGATTCGAGGTATGTCGGGGCCGGTGTTGGATCGGAGAAAGAATGGATGGTGGTTGTGTT 479
Query 677 GACGACAAGTACTCCAGGTGGAAGCTTTACAGCTGGTGTTGCTGCTGGCAAGGCGACGTC 736
||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 480 GACAACAAGCACTCCAGGTGGAAGCTTTACTGCTGGTGTTGCTGCTGGTGAGGCGACGTC 539
Query 737 TGTGAGAGTAATGGCTGGTTTAGGGCTAATGGGGTTGTTGTTTAGTTGCCTTGTGCTCTT 796
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGTGAGAGTGATGGCTGGTTTAGGGCTAATGGGGTTGTTGTTTAGTTGCCTTGTGCTCTT 599
Query 797 CTGA 800
||||
Sbjct 600 CTGA 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33395675292
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5