BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54870.1
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314874 jgi|Araly1|314874|fgenesh1_pm.C_scaffold_1003654 1376 0.0
> Ahg314874 jgi|Araly1|314874|fgenesh1_pm.C_scaffold_1003654
Length=1005
Score = 1376 bits (745), Expect = 0.0
Identities = 924/1011 (91%), Gaps = 9/1011 (1%)
Strand=Plus/Plus
Query 6 ATGAATGTGTTGTGTCGAGTGTTCACTTCGTCAAGAGTCTTATCATCAAACGTTACGTTC 65
||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGAATGTGCTGTGCCGAGTGTTCACTTCGTCAAGAGTCTTATCATCAAACTTTACGTTT 60
Query 66 TCGTTTTCTCAAATTCCAAACAATACCAAGAAACCTCTACTTGAAAAGAGAAGATTATCG 125
||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||
Sbjct 61 TCGTTTTCTCAAATTCCAAACAAAACCAAGAAAACTCTACCTGAAAAGAGAAGATTATCG 120
Query 126 CCGCGTGTGTGCCTAAGAGCGATGGCGTCTGAGAAACAAAAACAACATGCACAACCTGGC 185
| || ||||||| |||||||||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 121 CAGCTTGTGTGCGTAAGAGCGATGGCGACTGAGAAACAAAAACAACATGGACAACCT-GC 179
Query 186 AAAGAACATGTCATGGAATCAAGC-CCACAATTCTCTAGCTCAGATTACCAACCTTCCAA 244
|||||||||||||||||| || | ||||||||||||||||||||||||||||| |||||
Sbjct 180 AAAGAACATGTCATGGAA-AAAACTCCACAATTCTCTAGCTCAGATTACCAACCCTCCAA 238
Query 245 CAAGCTTCGTGGTAAGGTGGCGTTGATAACTGGTGGAGACTCTGGGATTGGTCGAGCCGT 304
|||||||| || || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 239 CAAGCTTC--GGAAAAGTGGCGTTGATAACTGGTGGAGACTCGGGGATTGGTCGAGCCGT 296
Query 305 GGGATACTGTTTTGCATC-CGAAGGAGCTACTGTGGCTTTCACTTACGTGAAGGGTCAAG 363
|||||||||||||||| | |||||| ||||| ||||||||||||||||| ||||| ||||
Sbjct 297 GGGATACTGTTTTGCA-CTCGAAGGGGCTACGGTGGCTTTCACTTACGTTAAGGGGCAAG 355
Query 364 AAGAAAAAGATGCACAAGAGACCCTACAAATGTTGAAGGAGGTCAAAACCTCGGACTCCA 423
| |||||||||||||| ||||| |||||||||||||| |||| |||||||||||| | |
Sbjct 356 AGGAAAAAGATGCACATGAGACGCTACAAATGTTGAAAAAGGTAAAAACCTCGGACGCTA 415
Query 424 AGGAACCTATCGCCATTCCAACGGATTTAGGATTTGACGAAAACTGCAAAAGGGTCGTTG 483
| || || || || |||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 416 AAGAGCCCATTGCGATTCCAACGGATTTAGGATTTGACGAGAACTGCAAGAGGGTTGTTG 475
Query 484 ATGAGGTCGTTAATGCTTTTGGCCGCATCGATGTTTTGATCAATAACGCAGCAGAGCAGT 543
||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 476 ATGAGGTCGTTAACGCGTTTGGTCGCATCGATGTCTTGATCAATAACGCAGCAGAGCAGT 535
Query 544 ACGAGAGCAGCACAATCGAAGAGATTGATGAGCCTAGGCTTGAGCGAGTCTTCCGTACAA 603
| || |||||| | |||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 536 ATGAAAGCAGCTCGGTCGAGGAGATTGATGAGCCTAGACTTGAGCGAGTCTTCCGTACAA 595
Query 604 ACATCTTTTCTTACTTCTTT-CTCACAAGGCATGCGTTGAAGCATATGAAGGAAGGAAGC 662
||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 596 ACATCTTCTCTTACTT-TTTCCTCACAAGGCATGCGTTGAAGCATATGAAGGAAGGAAGC 654
Query 663 AGCATTATCAACACCACTTCGGTGAATGCCTACAAGGGAAACGCTTCACTTCTCGACTAC 722
||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 655 AGCATTATCAACACCACATCAGTGAATGCCTACAAGGGAAACGCTTCGCTTCTCGACTAT 714
Query 723 ACCGCTACAAAAGGAGCGATTGTGGCGTTTACTCGAGGACTTGCACTTCAGCTAGCTGAG 782
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 715 ACAGCTACAAAAGGAGCGATTGTGGCGTTTACTCGAGGGCTTGCACTTCAGCTTGCGGAG 774
Query 783 AAAGGAATCCGTGTCAATGGTGTGGCTCCTGGTCCAATATGGACACCCCTTATCCCAGCA 842
||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 775 AAAGGAATCCGAGTCAATGGTGTGGCTCCTGGTCCGATATGGACACCACTTATCCCAGCC 834
Query 843 TCATTCAATGAGGAGAAGATTAAGAATTTTGGGTCTGAGGTTCCGATGAAAAGAGCGGGT 902
|| |||||||||||||| || |||||||| ||||||||||||||||||||| | |||||
Sbjct 835 TCGTTCAATGAGGAGAAAATCAAGAATTTCGGGTCTGAGGTTCCGATGAAACGTGCGGGG 894
Query 903 CAGCCAATTGAAGTGGCACCATCCTATGTTTTCTTGGCGTGTAACCACTGCTCTTCTTAC 962
||||| ||||||||||| || || |||||||||||||| |||||||| ||||||||||||
Sbjct 895 CAGCCTATTGAAGTGGCGCCTTCGTATGTTTTCTTGGCTTGTAACCATTGCTCTTCTTAC 954
Query 963 TTCACTGGTCAAGTTCTTCACCCTAATGGAGGAGCTGTGGTAAATGCGTAA 1013
|| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 955 TTTACTGGTCAAGTTCTTCACCCCAATGGAGGAGCTGTGGTGAATGCGTAA 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46433712906
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5