BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54930.1
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314878 jgi|Araly1|314878|fgenesh1_pm.C_scaffold_1003658 1347 0.0
> Ahg314878 jgi|Araly1|314878|fgenesh1_pm.C_scaffold_1003658
Length=1059
Score = 1347 bits (729), Expect = 0.0
Identities = 952/1060 (90%), Gaps = 14/1060 (1%)
Strand=Plus/Plus
Query 1 ATGTCCAGTGGCGATTGCTTCCATTGTCATCAACCAGGCCACTGGGCCAAAAACTGTCCT 60
||||| | |||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGTCAACTGGCGATTGCTTCCGTTGTCATCAACCAGGCCACTGGGCCAACAACTGTCCT 60
Query 61 CTCAAAACCACTACGAAACCCACCGCCGCCGCAGCCCCTTCTCCGCCGGACATTCACTGT 120
|||||||||||||||||||||||| |||| || ||| |||||||||||| ||||||||||
Sbjct 61 CTCAAAACCACTACGAAACCCACCACCGCGGCCGCCGCTTCTCCGCCGGTCATTCACTGT 120
Query 121 CCCTGCAACGCCGGACCTTGCAACACTGTGACTTCTAAAACTGAGAAAAACCCAAACAGG 180
|| || ||||||||| ||||||||| | ||||||| | |||| |||||||||||||||||
Sbjct 121 CCATGTAACGCCGGAGCTTGCAACATTTTGACTTCCACAACTAAGAAAAACCCAAACAGG 180
Query 181 AGATTCTACACATGCCCAAGCTGTGGATATTTCAAGTGGTGTGATCAAGGTTTAGGAGAT 240
|||||||||||||||||||||||| || |||||||||||||||||||||||| || |||
Sbjct 181 AGATTCTACACATGCCCAAGCTGTAAATTTTTCAAGTGGTGTGATCAAGGTTTTGGGGAT 240
Query 241 TGTGGATTCTTTAAATGGGAGGATGGTGAGAGTTTGCTACATGAAACTGAGTTGGACTCT 300
||||||||||||||||||||||| ||| |||||||| || ||||| |||||||| |||
Sbjct 241 TGTGGATTCTTTAAATGGGAGGA---TGATAGTTTGCTTCACGAAACCGAGTTGGATTCT 297
Query 301 GATGGTAATGTGAAAAGGAACAGACTTGGAGTTGTGGTTGAATTAGAATTGAATCCAGCT 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 298 GATGGTAATGTGAAAAGGAACAGACTTGGAGTTGTGGTTGAATCAGAATTGAATCCAACT 357
Query 361 TCATCTAGTGAGTCTAATACTCTTGGAAACAGAATTGTTGATACTCTTCCAGTGAATCCA 420
||||||| |||||||| ||||||||||||||| |||| |||||||||||||||||| ||
Sbjct 358 TCATCTAATGAGTCTACGACTCTTGGAAACAGAGTTGTGGATACTCTTCCAGTGAATGCA 417
Query 421 GTCACTGTGGGAAAGGAATCGATTCCGGTTTTCGCAGGTTTCAACGATCAAGGATCGGTC 480
|||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||||
Sbjct 418 GTCACTGTGGGAAAAGAATTGATTCCGGTTTTCGCAGGTTTCAACAATCAAGAATCGGTC 477
Query 481 TCCAACAGCATTGTCCCTTCATTTGATTTGATTACACTGTATGACGATGCGGTTCGCCTT 540
|||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 478 TCCAACGGGATTGTCCCTTCATTTGATTTGATTACACTACATGACGATGCGGTTCGCCTT 537
Query 541 GAGACGAAAGAGCCAGTACTCCCTTCAGTTGCCCCTAAACATCTTGATACTCAAGTGGAG 600
|||||| |||||| ||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 538 GAGACGGAAGAGCAAGTACTCCCTTTAGTTGCCCCTAAACATCTTGATCCTCAAGTGGAG 597
Query 601 ACTTTGTGTGGTAATG-CA-TT--G----G-AGGCCGTAGAGAGT-AGTTCTCAGAACAC 650
|||||| |||||| | || || | | ||| ||||| | || | |||| |||||||
Sbjct 598 CCTTTGTATGGTAAGGACAGTTATGCATCGGAGGGCGTAGCGGGTCA-TTCTGAGAACAC 656
Query 651 AAGCGATCTAGTTTTGAATGCTAACAACAAACCTGAGCATATACATCAACGAGCTGCGAC 710
|||||||| ||||||||||| || ||| |||||||||||||||||||||| | || |||
Sbjct 657 AAGCGATCCAGTTTTGAATGGTAGCAAAAAACCTGAGCATATACATCAACCATCTATGAC 716
Query 711 ATCTGGTGAAACCGAGGCCTCATATTCAGGTAGCTCCTCCATGATGGTACTTATTGAGCA 770
||||||||||| ||||||||||| ||||||| |||||||||||| | ||||||||| ||
Sbjct 717 ATCTGGTGAAATCGAGGCCTCATTTTCAGGTGGCTCCTCCATGAAGAAACTTATTGAACA 776
Query 771 ATATAAGTCAGAGAAGCTCTATCTCGAGAGTATATCTATGAAACATGTTGAGGCGTTGAC 830
|||||| |||||||||||| || |||||||||||||||||||||||||||| ||||||||
Sbjct 777 ATATAACTCAGAGAAGCTCAATTTCGAGAGTATATCTATGAAACATGTTGATGCGTTGAC 836
Query 831 TGCCTATACGGGTTCGTACAAGCAGTTAGAGTCGCTTCGTGATAGAGCACATAGTCTTAA 890
||| | || || |||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 837 TGCTTTTATGGATTCGTACAAGCAATTAGAGTCGCTTCGTGATAGAGCACATAGCCTCAG 896
Query 891 GAAGCAGTTACTTGAGGTAGAGAAACAGGTGAAGCTTTGTGAGGCTGAGACCTCAGAGTT 950
||| ||| ||||||| ||||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 897 GAAACAGCTACTTGAAGTAGAGAAAGAGGTGAAGCTTTACGAGGCTGAGACCTCAGAATT 956
Query 951 TGCAGCAAGTGTTCAAGAAGTTTCTGGTGAAATGGCGAAATCGCAGAAGAAAATGGTGGA 1010
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 957 TGCAGCAAGTCTTCAAGAAGTTTCTGGTGAAATGGCGAAATCGCAAAAGAAAATGGTGGA 1016
Query 1011 GATAGCTGGGAAAGTAGCTAAGGAAGTGAGAGTTGACAAG 1050
|| || ||||||||||||||||||||||||||| |||||
Sbjct 1017 GACGGCAGGGAAAGTAGCTAAGGAAGTGAGAGTTAACAAG 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39533464929
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5