BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G54940.1 Length=1674 Score E Sequences producing significant alignments: (Bits) Value Ahg337776 jgi|Araly1|337776|fgenesh1_pg.C_scaffold_1004341 2534 0.0 > Ahg337776 jgi|Araly1|337776|fgenesh1_pg.C_scaffold_1004341 Length=1683 Score = 2534 bits (1372), Expect = 0.0 Identities = 1584/1686 (94%), Gaps = 15/1686 (1%) Strand=Plus/Plus Query 1 ATGGGGACAAAAACCCATAATTCTAGAGGGAAAATCTTCATGATCTATCTAATCCTAGTC 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 1 ATGGGGACAAAAACCCATAATTCTAGAGGGAAAATCTTCATGATCTATCTAATACTAACC 60 Query 61 TCATTGTCA---C---TTCTAGGTTTGATCTTACCTTTTAAACCTCTTTTCCGGATTAC- 113 ||||||||| | ||||||||||||||||| |||||||||||||||| |||||| | Sbjct 61 TCATTGTCACTTCTAGTTCTAGGTTTGATCTTATCTTTTAAACCTCTTTTACGGATT-CG 119 Query 114 TTCTCCATCTTCAACGTTACGGA-T--TGATCTTCCATCGCCGCAAGTCAACAAAAACCC 170 |||||||||||||||||||||| | ||||||||| |||||||||||||||||||||| Sbjct 120 ATCTCCATCTTCAACGTTACGGATTGATGATCTTCCGCCGCCGCAAGTCAACAAAAACCC 179 Query 171 GAAATGGCTT-CGACTCATCCGTAACTATCTACCAGAGAAA-AGAATCCAAGTCGGCTTC 228 |||||| || ||||||||||||||||||||||| || ||| ||||| |||||||||||| Sbjct 180 CAAATGG-TTCCGACTCATCCGTAACTATCTACCGGA-AAAGAGAATTCAAGTCGGCTTC 237 Query 229 CTTAACATAGACGAGAAAGAGCGTGAGAGCTACGAGGCTCGTGGACCGTTGGTACTTAAG 288 || ||||| ||| ||| ||| |||||||| ||||||||||||||||||||| || | ||| Sbjct 238 CTCAACATTGACCAGATAGAACGTGAGAGGTACGAGGCTCGTGGACCGTTGATAGTAAAG 297 Query 289 AACATCCACGTGCCGCTTGATCATATACCCAAGAATGTCACTTGGAAGAGTCTTTACCCG 348 |||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||| Sbjct 298 AACATCCACGTGCCGCTTGATCCTATACCGAAGAATGTTACTTGGAAGAGTCTTTACCCG 357 Query 349 GAGTGGATCAACGAGGAAGCTTCTACCTGTCCGGAGATCCCTCTCCCTCAGCCAGAAGGT 408 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 358 GAGTGGATCAACGAGGAAGTTTCTAACTGTCCGGAGATCCCTCTCCCTCAGCCAGAAGGT 417 Query 409 TCTGATGCTAACGTGGACGTTATTGTTGCTAGAGTTCCATGTGATGGTTGGTCGGCGAAT 468 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 418 TCTGATGCTAACGTGGACGTTATCGTTGCTAGAGTTCCATGTGATGGTTGGTCGGAGAAT 477 Query 469 AAAGGGCTTAGGGACGTTTTTAGGCTTCAGGTTAATTTGGCCGCAGCGAATCTAGCCGTC 528 |||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 478 AAAGGGCTTAGGGATGTTTTTAGGCTTCAGGTTAACTTGGCCGTTGCGAATCTAGCCGTC 537 Query 529 CAAAGTGGGTTGAGGACGGTTAATCAGGCGGTCTACGTTGTATTCATCGGCTCATGTGGG 588 |||||||||||||||| |||| |||||||||| |||||||| |||||||| |||||||| Sbjct 538 CAAAGTGGGTTGAGGAGGGTTGATCAGGCGGTGTACGTTGTGTTCATCGGGTCATGTGGC 597 Query 589 CCTATGCATGAGATTTTCCCGTGCGATGAGCGCGTGATGCGCGTGGAGGATTATTGGGTG 648 ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 598 CCTATGCATGAGATTTTCCCGTGCGATGAGCGCGTGAGGCGCGTGGATGATTATTGGGTG 657 Query 649 TATAAGCCTTATCTCCCAAGGTTGAAGCAGAAGCTTCTCATGCCTGTTGGTTCATGTCAG 708 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 TATAAGCCTTATCTCCCAAGGTTGAAGCAGAAGCTTCTCATGCCTGTTGGTTCATGTCAC 717 Query 709 ATTGCTCCTTCATTTGCTCAATTTGGTCAAGAAGCATGGAGACCAAAACATGAAGATAAT 768 ||||| ||| |||||||||||||||| ||||| |||||||||||||||||| |||| ||| Sbjct 718 ATTGCACCTCCATTTGCTCAATTTGGCCAAGAGGCATGGAGACCAAAACATAAAGACAAT 777 Query 769 CTTGCATCAAAGGCAGTCACAGCCTTACCCCGTCGCTTACGGGTTGCCTACGTGACAGTA 828 |||| ||| |||| ||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 778 CTTGTATCCGAGGCGGTCACAGCCTTACCCCGACGCTTACGGGTTGCCTACGTAACAGTA 837 Query 829 CTACACTCGTCAGAAGCCTATGTTTGTGGGGCAATAGCTTTAGCGCAAAGTATAAGACAA 888 ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 838 CTACATTCTTCAGAAGCCTATGTTTGTGGGGCAATAGCCTTAGCGCAAAGTATAAGACAA 897 Query 889 TCAGGATCGCATAAGGACATGATTCTCCTCCATGATCATACCATAACCAACAAGTCTCTT 948 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 ACAGGATCTCATAAGGACATGATTCTCCTCCATGATCATACCATAACCAACAAGTCTCTT 957 Query 949 ATTGGTCTCAGCGCTGCGGGATGGAATCTCCGGCTAATCGACAGGATCCGCAGTCCTTTT 1008 |||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 958 ATTGGTCTCAGCTCTGCGGGATGGAATCTCCGGCTAATCGAAAGAATCCGCAGTCCTTTT 1017 Query 1009 TCGCAAAAAGACTCTTATAATGAGTGGAACTATAGCAAATTACGTGTGTGGCAAGTAACT 1068 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1018 TCGCAAAAAGACTCTTATAATGAGTGGAACTACAGCAAATTACGTGTGTGGCAAGTAACT 1077 Query 1069 GACTACGATAAACTTGTGTTCATAGACGCAGATTTCATCATCCTCAAGAAACTTGATCAT 1128 || ||||| |||||||||||||||||||||||||| ||||| ||||||||| ||||| || Sbjct 1078 GATTACGACAAACTTGTGTTCATAGACGCAGATTTAATCATTCTCAAGAAAATTGATTAT 1137 Query 1129 CTCTTCTACTATCCACAACTCTCAGCTTCAGGCAACGACAAAGTGTTATTCAACTCCGGA 1188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 CTCTTCTACTATCCACAACTCTCAGCTTCAGGCAACGACAAAGTGTTATTCAACTCCGGA 1197 Query 1189 ATCATGGTTCTCGAGCCATCGGCATGTATGTTTAAAGATTTAATGGAGAAATCGTTCAAG 1248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 ATCATGGTTCTCGAGCCATCGGCATGTATGTTTAAAGATTTAATGGAGAAATCGTTCAAG 1257 Query 1249 ATTGAGTCATACAACGGAGGAGACCAAGGATTCCTTAATGAGATATTTGTATGGTGGCAC 1308 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1258 ATCGAGTCATACAACGGAGGAGACCAAGGCTTCCTTAATGAGATATTTGTATGGTGGCAC 1317 Query 1309 AGGTTATCGAAACGAGTGAACACAATGAAGTACTTCGACGaaaaaaaTCATCGAAGACAC 1368 ||| |||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 1318 AGGCTATCGAAACGTGTGAACACAATGAAGTACTTCGACGAAAAAAGTCAACGAAGACAC 1377 Query 1369 GATCTTCCTGAGAATGTAGAAGGTCTGCACTACTTGGGGTTGAAACCATGGGTATGTTAT 1428 |||||||| |||||| |||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 1378 GATCTTCCAGAGAATCTAGAAGGTCTGCACTACTTGGGATTGAAGCCATGGGTATGTTAT 1437 Query 1429 AGAGACTATGATTGCAATTGGGACATTAGCGAACGACGCGTGTTTGCAAGCGATTCTGTG 1488 |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 1438 AGAGACTACGATTGCAATTGGGACATGAGCGAACGACGCGTGTTTGCTAGCGATTCTGTG 1497 Query 1489 CACGAAAAATGGTGGAAAGTGTATGACAAAATGTCAGAGCAGTTGAAAGGTTATTGTGGT 1548 |||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct 1498 CACGAAAAATGGTGGAAAGTATATGACAAAATGTCAGATCAGTTGAAGGGTTATTGTGGT 1557 Query 1549 TTGAATAAGAATATGGAGAAGAGGATTGAGAAGTGGAGAAGAATCGCTAAGAACAATAGT 1608 || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 1558 TTAAATAAGAATATGGAGAAGAGGATTGAGAAGTGGAGAAGAATTGCTAAGAATAATAGT 1617 Query 1609 TTGCCTGATAGGCATTGGGAGATTGAAGTGAGAGATCCTAGGAAGACGAATCTTCTTGTT 1668 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1618 TTGCCTGATAGGCATTGGGAGATTGAAGTGAGAGATCCTAGGAAGACGAACCTTCTTGTT 1677 Query 1669 CAGTGA 1674 |||||| Sbjct 1678 CAGTGA 1683 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62772723760 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5