BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54940.1
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337776 jgi|Araly1|337776|fgenesh1_pg.C_scaffold_1004341 2534 0.0
> Ahg337776 jgi|Araly1|337776|fgenesh1_pg.C_scaffold_1004341
Length=1683
Score = 2534 bits (1372), Expect = 0.0
Identities = 1584/1686 (94%), Gaps = 15/1686 (1%)
Strand=Plus/Plus
Query 1 ATGGGGACAAAAACCCATAATTCTAGAGGGAAAATCTTCATGATCTATCTAATCCTAGTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1 ATGGGGACAAAAACCCATAATTCTAGAGGGAAAATCTTCATGATCTATCTAATACTAACC 60
Query 61 TCATTGTCA---C---TTCTAGGTTTGATCTTACCTTTTAAACCTCTTTTCCGGATTAC- 113
||||||||| | ||||||||||||||||| |||||||||||||||| |||||| |
Sbjct 61 TCATTGTCACTTCTAGTTCTAGGTTTGATCTTATCTTTTAAACCTCTTTTACGGATT-CG 119
Query 114 TTCTCCATCTTCAACGTTACGGA-T--TGATCTTCCATCGCCGCAAGTCAACAAAAACCC 170
|||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||
Sbjct 120 ATCTCCATCTTCAACGTTACGGATTGATGATCTTCCGCCGCCGCAAGTCAACAAAAACCC 179
Query 171 GAAATGGCTT-CGACTCATCCGTAACTATCTACCAGAGAAA-AGAATCCAAGTCGGCTTC 228
|||||| || ||||||||||||||||||||||| || ||| ||||| ||||||||||||
Sbjct 180 CAAATGG-TTCCGACTCATCCGTAACTATCTACCGGA-AAAGAGAATTCAAGTCGGCTTC 237
Query 229 CTTAACATAGACGAGAAAGAGCGTGAGAGCTACGAGGCTCGTGGACCGTTGGTACTTAAG 288
|| ||||| ||| ||| ||| |||||||| ||||||||||||||||||||| || | |||
Sbjct 238 CTCAACATTGACCAGATAGAACGTGAGAGGTACGAGGCTCGTGGACCGTTGATAGTAAAG 297
Query 289 AACATCCACGTGCCGCTTGATCATATACCCAAGAATGTCACTTGGAAGAGTCTTTACCCG 348
|||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||
Sbjct 298 AACATCCACGTGCCGCTTGATCCTATACCGAAGAATGTTACTTGGAAGAGTCTTTACCCG 357
Query 349 GAGTGGATCAACGAGGAAGCTTCTACCTGTCCGGAGATCCCTCTCCCTCAGCCAGAAGGT 408
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 358 GAGTGGATCAACGAGGAAGTTTCTAACTGTCCGGAGATCCCTCTCCCTCAGCCAGAAGGT 417
Query 409 TCTGATGCTAACGTGGACGTTATTGTTGCTAGAGTTCCATGTGATGGTTGGTCGGCGAAT 468
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 418 TCTGATGCTAACGTGGACGTTATCGTTGCTAGAGTTCCATGTGATGGTTGGTCGGAGAAT 477
Query 469 AAAGGGCTTAGGGACGTTTTTAGGCTTCAGGTTAATTTGGCCGCAGCGAATCTAGCCGTC 528
|||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 478 AAAGGGCTTAGGGATGTTTTTAGGCTTCAGGTTAACTTGGCCGTTGCGAATCTAGCCGTC 537
Query 529 CAAAGTGGGTTGAGGACGGTTAATCAGGCGGTCTACGTTGTATTCATCGGCTCATGTGGG 588
|||||||||||||||| |||| |||||||||| |||||||| |||||||| ||||||||
Sbjct 538 CAAAGTGGGTTGAGGAGGGTTGATCAGGCGGTGTACGTTGTGTTCATCGGGTCATGTGGC 597
Query 589 CCTATGCATGAGATTTTCCCGTGCGATGAGCGCGTGATGCGCGTGGAGGATTATTGGGTG 648
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 598 CCTATGCATGAGATTTTCCCGTGCGATGAGCGCGTGAGGCGCGTGGATGATTATTGGGTG 657
Query 649 TATAAGCCTTATCTCCCAAGGTTGAAGCAGAAGCTTCTCATGCCTGTTGGTTCATGTCAG 708
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TATAAGCCTTATCTCCCAAGGTTGAAGCAGAAGCTTCTCATGCCTGTTGGTTCATGTCAC 717
Query 709 ATTGCTCCTTCATTTGCTCAATTTGGTCAAGAAGCATGGAGACCAAAACATGAAGATAAT 768
||||| ||| |||||||||||||||| ||||| |||||||||||||||||| |||| |||
Sbjct 718 ATTGCACCTCCATTTGCTCAATTTGGCCAAGAGGCATGGAGACCAAAACATAAAGACAAT 777
Query 769 CTTGCATCAAAGGCAGTCACAGCCTTACCCCGTCGCTTACGGGTTGCCTACGTGACAGTA 828
|||| ||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 778 CTTGTATCCGAGGCGGTCACAGCCTTACCCCGACGCTTACGGGTTGCCTACGTAACAGTA 837
Query 829 CTACACTCGTCAGAAGCCTATGTTTGTGGGGCAATAGCTTTAGCGCAAAGTATAAGACAA 888
||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 838 CTACATTCTTCAGAAGCCTATGTTTGTGGGGCAATAGCCTTAGCGCAAAGTATAAGACAA 897
Query 889 TCAGGATCGCATAAGGACATGATTCTCCTCCATGATCATACCATAACCAACAAGTCTCTT 948
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 ACAGGATCTCATAAGGACATGATTCTCCTCCATGATCATACCATAACCAACAAGTCTCTT 957
Query 949 ATTGGTCTCAGCGCTGCGGGATGGAATCTCCGGCTAATCGACAGGATCCGCAGTCCTTTT 1008
|||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 958 ATTGGTCTCAGCTCTGCGGGATGGAATCTCCGGCTAATCGAAAGAATCCGCAGTCCTTTT 1017
Query 1009 TCGCAAAAAGACTCTTATAATGAGTGGAACTATAGCAAATTACGTGTGTGGCAAGTAACT 1068
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1018 TCGCAAAAAGACTCTTATAATGAGTGGAACTACAGCAAATTACGTGTGTGGCAAGTAACT 1077
Query 1069 GACTACGATAAACTTGTGTTCATAGACGCAGATTTCATCATCCTCAAGAAACTTGATCAT 1128
|| ||||| |||||||||||||||||||||||||| ||||| ||||||||| ||||| ||
Sbjct 1078 GATTACGACAAACTTGTGTTCATAGACGCAGATTTAATCATTCTCAAGAAAATTGATTAT 1137
Query 1129 CTCTTCTACTATCCACAACTCTCAGCTTCAGGCAACGACAAAGTGTTATTCAACTCCGGA 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CTCTTCTACTATCCACAACTCTCAGCTTCAGGCAACGACAAAGTGTTATTCAACTCCGGA 1197
Query 1189 ATCATGGTTCTCGAGCCATCGGCATGTATGTTTAAAGATTTAATGGAGAAATCGTTCAAG 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ATCATGGTTCTCGAGCCATCGGCATGTATGTTTAAAGATTTAATGGAGAAATCGTTCAAG 1257
Query 1249 ATTGAGTCATACAACGGAGGAGACCAAGGATTCCTTAATGAGATATTTGTATGGTGGCAC 1308
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1258 ATCGAGTCATACAACGGAGGAGACCAAGGCTTCCTTAATGAGATATTTGTATGGTGGCAC 1317
Query 1309 AGGTTATCGAAACGAGTGAACACAATGAAGTACTTCGACGaaaaaaaTCATCGAAGACAC 1368
||| |||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1318 AGGCTATCGAAACGTGTGAACACAATGAAGTACTTCGACGAAAAAAGTCAACGAAGACAC 1377
Query 1369 GATCTTCCTGAGAATGTAGAAGGTCTGCACTACTTGGGGTTGAAACCATGGGTATGTTAT 1428
|||||||| |||||| |||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1378 GATCTTCCAGAGAATCTAGAAGGTCTGCACTACTTGGGATTGAAGCCATGGGTATGTTAT 1437
Query 1429 AGAGACTATGATTGCAATTGGGACATTAGCGAACGACGCGTGTTTGCAAGCGATTCTGTG 1488
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1438 AGAGACTACGATTGCAATTGGGACATGAGCGAACGACGCGTGTTTGCTAGCGATTCTGTG 1497
Query 1489 CACGAAAAATGGTGGAAAGTGTATGACAAAATGTCAGAGCAGTTGAAAGGTTATTGTGGT 1548
|||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 1498 CACGAAAAATGGTGGAAAGTATATGACAAAATGTCAGATCAGTTGAAGGGTTATTGTGGT 1557
Query 1549 TTGAATAAGAATATGGAGAAGAGGATTGAGAAGTGGAGAAGAATCGCTAAGAACAATAGT 1608
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1558 TTAAATAAGAATATGGAGAAGAGGATTGAGAAGTGGAGAAGAATTGCTAAGAATAATAGT 1617
Query 1609 TTGCCTGATAGGCATTGGGAGATTGAAGTGAGAGATCCTAGGAAGACGAATCTTCTTGTT 1668
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1618 TTGCCTGATAGGCATTGGGAGATTGAAGTGAGAGATCCTAGGAAGACGAACCTTCTTGTT 1677
Query 1669 CAGTGA 1674
||||||
Sbjct 1678 CAGTGA 1683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62772723760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5