BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54950.1
Length=291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474771 jgi|Araly1|474771|fgenesh2_kg.1__4725__AT1G54950.1 427 2e-119
> Ahg474771 jgi|Araly1|474771|fgenesh2_kg.1__4725__AT1G54950.1
Length=315
Score = 427 bits (231), Expect = 2e-119
Identities = 272/291 (93%), Gaps = 5/291 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCCACCAACTTTCCTCTCATCTTCCTCCTCGTACTA-CTAGGT-TCTCTCTATG 58
|||||||||||||| ||||||||||||||||||||||||||| | | | ||||||| ||
Sbjct 11 ATGGCTTCCACCAATTTTCCTCTCATCTTCCTCCTCGTACTAGC-A--TCTCTCTCTCTG 67
Query 59 TAGCTTTCGGATATTCTCTTTCCACAAGAGCTGCTTTTTCAAAACAAGAAGATGAATCAT 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 TAGCTTTCGGATATTCTCTTTCCACAAGAGCTGCTTTTTCAAAACAAGAAGATGAATCAT 127
Query 119 TTCTTGTGGTTACCAATGATCAAGGATCATCGATTATTGTTGTTGAAGATCTTGGAAAAA 178
| ||||||| ||| ||||||||||||||||| || || |||||||||||||| | |||||
Sbjct 128 TCCTTGTGGCTACGAATGATCAAGGATCATCAATGATCGTTGTTGAAGATCTAGTAAAAA 187
Query 179 CTCGAAGTCTTCAAGCTCTAGTCGATGGCTCAAAAGTTGCTGTGAATGAAGAAGTTCCTA 238
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 188 CTCGAAGTCTTCAAGCTCTAGTCGATGGCTCAAAAGTTGTTGTGAATGAAGAAGTTCCTA 247
Query 239 AGCGACGTTCAGTCAAGAGTAAACTCTTCTCTAGACTACAAAAACTTGCTT 289
||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 248 AGCGACGTTCAACCAAGAGTAAACTCTTCTCTAAACTACAAAAACTTGCTT 298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10187542263
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5