BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54970.1
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474772 jgi|Araly1|474772|fgenesh2_kg.1__4726__AT1G54970.1 1382 0.0
Ahg924267 jgi|Araly1|924267|scaffold_105548.1 780 0.0
Ahg324693 jgi|Araly1|324693|fgenesh1_pm.C_scaffold_5002237 518 5e-146
> Ahg474772 jgi|Araly1|474772|fgenesh2_kg.1__4726__AT1G54970.1
Length=1011
Score = 1382 bits (748), Expect = 0.0
Identities = 925/1011 (91%), Gaps = 9/1011 (1%)
Strand=Plus/Plus
Query 7 ATCACACGTGCCTCCTTTGCGATTTGCATCCTCCTCTCTTTGGCTACCATTGCTACTGCT 66
|||||||| ||||||||||||||||| | |||||||||||||| |||||||| ||||||
Sbjct 7 ATCACACGCACCTCCTTTGCGATTTGCCTACTCCTCTCTTTGGCCACCATTGCCACTGCT 66
Query 67 GATTATTACGCTCCCTCATCTCCTCCGGTTTACACTTCACCGGTTAATAAACCCACGCTT 126
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 GATTACTACGCCCCCTCATCTCCTCCGGTTTACACTTCACCGGTTAATAAACCCACGCTT 126
Query 127 CCACCTCCGGTTTACACTCCACCGGTTCACAAACCTACCCTTCCACCTCCTGTTTACACT 186
|||||| |||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 127 CCACCTTCGGTTTACACTCCACCGGTTCAAAAACCTACCCTCCCACCTCCGGTTTACACT 186
Query 187 CCACCTGTC-CACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTACCACC 245
||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 187 CCACCTG-CACACAAGCCTACACTCTCACCTCCGGTTTACGCTAAGCCAACTCTACCTCC 245
Query 246 TCCGGCTTACACTCCACCGGTTTACAATAAGCCAACGCTCCCAGCTCCTGTCTACACTCC 305
|||||||||||||||||||||||| | ||||||||| || | ||||||||||||||||||
Sbjct 246 TCCGGCTTACACTCCACCGGTTTATACTAAGCCAACTCTACAAGCTCCTGTCTACACTCC 305
Query 306 GCCTGTTTATAAGCCTACACTCTCCCCTCCGGTTTACACTAAGCCAACTCTCTTACCTCC 365
|| ||||| ||||||||||| || ||||| |||||||||||||||||||||| ||||||
Sbjct 306 ACCGGTTTACAAGCCTACACTTTCACCTCCTGTTTACACTAAGCCAACTCTCTCACCTCC 365
Query 366 GGTTTTCAAGCCTACACTCTCTCCTCCAGTTTACACTAAGCCAACTCTCTCACCTACGGT 425
|||| ||||||||||||| | ||||| |||| |||||||||||||||||||||| ||||
Sbjct 366 AGTTTACAAGCCTACACTCCCACCTCCGGTTTTCACTAAGCCAACTCTCTCACCTCCGGT 425
Query 426 TTACAAGCCAACACTCTCTCCTCCGGTTAACA-ATAAGCCAAGTCTCTCGCCTCCGGTTT 484
||||||||| |||||||||||||| ||| ||| | ||||||| |||||| ||||||||||
Sbjct 426 TTACAAGCCTACACTCTCTCCTCCCGTTTACACA-AAGCCAACTCTCTCACCTCCGGTTT 484
Query 485 ACAAGCCAACACTCTCTCCTCCGGTTTACACTAAGCCAACTCTCCCTCCTCCGGTCTACA 544
||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 485 ACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTCCATCCTCCGGTCTACA 544
Query 545 AAAAGTCTCCAAGCTATTCTCCTCCACCTCCATTTGCACCAAAACCAACCTACACTCCAC 604
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 545 AAAAGTCTCCAAGCTTTTCTCCTCCACCTCCATATGTACCAAAACCAACCTACACTCCAC 604
Query 605 CCACCAAACCATACGTCCCAGAGATCATTAAAGCCGTTGGA-GGCATCATCTTATGCAAA 663
||||||| ||||||||||| ||||||||||||||||||| | ||||||||||||||||||
Sbjct 605 CCACCAAGCCATACGTCCCTGAGATCATTAAAGCCGTTG-ATGGCATCATCTTATGCAAA 663
Query 664 AACGGCTACGAAACCTACCCTATTCAAGGAGCGAAAGCAAAGATTGTGTGCTCGGAGAGG 723
||||||||||||| |||||| ||||||||||| |||||||||||||||||||| |||| |
Sbjct 664 AACGGCTACGAAAGCTACCCAATTCAAGGAGCAAAAGCAAAGATTGTGTGCTCCGAGATG 723
Query 724 GGGTCATACGAGAAGAGTAAGAACGAGGTTGTCATCTACAGTGATCCAACTGACTTTAAG 783
| ||||||| ||||| |||||||||||||| |||||||| |||||||||||| ||||
Sbjct 724 GTATCATACGGGAAGAACAAGAACGAGGTTGTTATCTACAGCAATCCAACTGACTCTAAG 783
Query 784 GGATACTTCCACGTGGTGTTAACCCACATCAAGAACCTATCTAACTGCCGTGTCAAGCTC 843
||||| |||||||||| ||||||||| ||||||||||||||| ||||||||||||| |||
Sbjct 784 GGATATTTCCACGTGGCGTTAACCCATATCAAGAACCTATCTCACTGCCGTGTCAAACTC 843
Query 844 TACACATCTCCCGTCGAGACTTGCAAGAACCCAACCAATGTCAACAAGGGTCTCACCGGA 903
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 844 TACACATCTCCGGTCGAGACTTGCAAGAACCCGACCAATGTCAACAAGGGTCTCACCGGA 903
Query 904 GTTCCCTTCTCGATGTACTCCGACAAGAACTTGAAGCTCTTCAACGTTGGTCCTTTCTAC 963
|||| ||| |||||||||||||||| |||||||| ||||| ||||| ||||||||||||
Sbjct 904 GTTCTCTTATCGATGTACTCCGACATTAACTTGAAACTCTTTAACGTCGGTCCTTTCTAC 963
Query 964 TTCACCGCCGGTTCCAAGGCTGCTCCCGCCACTCCCAGATACTGATCATCA 1014
||||||| | |||||||||||||||||||||||||| ||||| | |||||
Sbjct 964 TTCACCG--G-TTCCAAGGCTGCTCCCGCCACTCCCAAATACTAACCATCA 1011
Score = 89.8 bits (48), Expect = 4e-17
Identities = 53/55 (96%), Gaps = 2/55 (4%)
Strand=Plus/Plus
Query 197 ACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTACCA-CCTCCGG 250
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 485 ACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCT-CCATCCTCCGG 538
> Ahg924267 jgi|Araly1|924267|scaffold_105548.1
Length=968
Score = 780 bits (422), Expect = 0.0
Identities = 766/919 (83%), Gaps = 76/919 (8%)
Strand=Plus/Plus
Query 130 CCTCCGGT-TTACACTCCACCGGTTCACAAACCTACCCTTCCACCTCCTGTTTACACTCC 188
||||| || ||||||| |||||||| | ||||| || ||||||||||| ||||||| |||
Sbjct 108 CCTCC-GTCTTACACTTCACCGGTTAATAAACCCACGCTTCCACCTCCGGTTTACATTCC 166
Query 189 ACCTGTCCACAAGCCTACAC-TCTCACCTCCGGTTTACACTAAGCCAACTCTACCACCTC 247
||| || || || ||||| | || || |||||||||||||| || || || | || |
Sbjct 167 ACCGGTTCAAAAACCTACCCTTC-CATCTCCGGTTTACACT---CC-AC-CT-GC-CCAC 218
Query 248 CGGCTTACACTC-CA---CCGGTTTACAATAAGCCAACGCTCCCAGCTCCTGTC-TACAC 302
||| ||||||| || |||||||| | ||| ||||| || || |||| | | |||||
Sbjct 219 AGGCCTACACTCTCACCTCCGGTTTATACTAAACCAACTCTACCTCCTCC-GGCTTACAC 277
Query 303 TCCGCCTG-TT-TA-TAAGCCTACACTCT-CC-CCTCCGGTTTACACTAAGCCAACTCTC 357
||| || | || || |||||| | ||||| || |||| | | || | | |||| |
Sbjct 278 TCCACCGGTTTATACTAAGCC-A-ACTCTACCAGCTCC--TGT---CT-A--C-ACTC-C 325
Query 358 TTACCTCCGGTTTTCAAGCCTACACTCTCTCCTCCAGTTTACACTAAGCCAACTCTCTCA 417
|||| |||| |||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 326 --ACCT---GTTTACAAGCCTACACTTTCACCTCCTGTTTACACTAAGCCAACTCTCTCA 380
Query 418 CCTACGGTTTACAAGCCAACACTCTCTCCTCCGGTTAACAATAAGCCAAGTCTCTCGCCT 477
||| |||||||||||||||| ||||| ||||||||| ||| |||||||| |||||| |||
Sbjct 381 CCTCCGGTTTACAAGCCAACTCTCTCACCTCCGGTTTACACTAAGCCAACTCTCTCCCCT 440
Query 478 CCGGTTTACAAGCCAACACTCTCTCCTCCGGTTTACACTAAGCCAACTCTCCCTCCTCCG 537
|||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 441 CCGGTTTACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTCCATCCTCCG 500
Query 538 GTCTACAAAAAGTCTCCAAGCTATTCTCCTCCACCTCCATTTGCACCAAAACCAACCTAC 597
|||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 501 GTCTACAAAAAGTCTCCAAGCTTTTCTCCTCCACCTCCATATGTACCAAAACCAACCTAC 560
Query 598 ACTCCACCCACCAAACCATACGTCCCAGAGATCATTAAAGCCGTTGGA-GGCATCATCTT 656
|||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||
Sbjct 561 ACTCCACCCACCAAACCATACGTCCCTGAGATCATTAAAGCCGTTG-ATGGCATCATCTT 619
Query 657 ATGCAAAAACGGCTACGAAACCTACCCTATTCAAGGAGCGAAAGCAAAGATTGTGTGCTC 716
|||||||||||| | | | | | ||| | |||| | ||||||||||
Sbjct 620 ATGCAAAAACGG--A-G---C--A----A---AAG---C-AAAG-A----TTGTGTGCTC 655
Query 717 GGAGAGGGGGTCATACGAGAA-GAGTAAGAACGAGGTTGTCATCTACAGTGATCCAACTG 775
|||| | ||||||| ||| || |||||||||||||| |||||||| | |||||||
Sbjct 656 CGAGATGATATCATACG-GAAAGAACAAGAACGAGGTTGTGATCTACAGCAACCCAACTG 714
Query 776 ACTTTAAGGGATACTTCCACGTGGTGTTAACCCACATCAAGAACCTATCTAACTGCCGTG 835
||| ||||||||| |||||||||| ||||||||| ||||||||||||||| |||||||||
Sbjct 715 ACTCTAAGGGATATTTCCACGTGGCGTTAACCCATATCAAGAACCTATCTCACTGCCGTG 774
Query 836 TCAAGCTCTACACATCTCCCGTCGAGACTTGCAAGAACCCAACCAATGTCAACAAGGGTC 895
|||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 775 TCAAACTCTACACATCTCCGGTCGAAACTTGCAAGAACCCGACCAATGTCAACAAGGGTC 834
Query 896 TCACCGGAGTTCCCTTCTCGATGTACTC--C-GACAAGAACTTGAAGCTCTTCAACGTTG 952
|||||||||||| ||| ||||||||||| | |||||||||||||| ||||| ||||| |
Sbjct 835 TCACCGGAGTTCTCTTATCGATGTACTCGGCCGACAAGAACTTGAAACTCTTTAACGTCG 894
Query 953 GTCCTTTCTACTTCACCGCCGGTTCCAAGGCTGCTCCCGCCACTCCCAGATACTGATCAT 1012
||||||| |||||||||| | |||||||||||||||||||||||||| ||||| |||||
Sbjct 895 GTCCTTTATACTTCACCG--G-TTCCAAGGCTGCTCCCGCCACTCCCAAATACTAATCAT 951
Query 1013 CA-CATTTTGATTTATGAT 1030
|| || || ||| |||||
Sbjct 952 CATCACATT-ATT-ATGAT 968
Score = 647 bits (350), Expect = 0.0
Identities = 444/490 (91%), Gaps = 4/490 (1%)
Strand=Plus/Plus
Query 1 ATGGCTATCACACGTGCCTCCTTTGCGATTTGCATCCTCCTCTCTTTGGCTACCATTGCT 60
||||| || ||||| |||||||||||||||| | |||||||||||||| ||||||||
Sbjct 21 ATGGCGATTACACGCAACTCCTTTGCGATTTGCCTACTCCTCTCTTTGGCCACCATTGCC 80
Query 61 ACTGCTGATTATTACGCTCCCTCATCTCCTCCGGT-TTACACTTCACCGGTTAATAAACC 119
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 81 ACTGCTGATTATTACGCTCCCTCATCTCCTCC-GTCTTACACTTCACCGGTTAATAAACC 139
Query 120 CACGCTTCCACCTCCGGTTTACACTCCACCGGTTCACAAACCTACCCTTCCACCTCCTGT 179
||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||| ||
Sbjct 140 CACGCTTCCACCTCCGGTTTACATTCCACCGGTTCAAAAACCTACCCTTCCATCTCCGGT 199
Query 180 TTACACTCCACCTGTCCACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCT 239
|||||||||||||| ||||| |||||||||||||||||||||||| ||||| ||||||||
Sbjct 200 TTACACTCCACCTGCCCACAGGCCTACACTCTCACCTCCGGTTTATACTAAACCAACTCT 259
Query 240 ACCACCTCCGGCTTACACTCCACCGGTTTACAATAAGCCAACGCTCCCAGCTCCTGTCTA 299
||| |||||||||||||||||||||||||| | ||||||||| || ||||||||||||||
Sbjct 260 ACCTCCTCCGGCTTACACTCCACCGGTTTATACTAAGCCAACTCTACCAGCTCCTGTCTA 319
Query 300 CACTCCGCCTGTTTATAAGCCTACACTCTCCCCTCCGGTTTACACTAAGCCAACTCTCTT 359
|||||| |||||||| ||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 320 CACTCCACCTGTTTACAAGCCTACACTTTCACCTCCTGTTTACACTAAGCCAACTCTCTC 379
Query 360 ACCTCCGGTTTTCAAGCCTACACTCTCTCCTCCAGTTTACACTAAGCCAACTCTCTCACC 419
||||||||||| |||||| || ||||| ||||| ||||||||||||||||||||||| ||
Sbjct 380 ACCTCCGGTTTACAAGCCAACTCTCTCACCTCCGGTTTACACTAAGCCAACTCTCTCCCC 439
Query 420 TACGGTTTACAAGCCAACACTCTCTCCTCCGGTTAACAATAAGCCAAGTCTCTCG-CCTC 478
| ||||||||||||| |||||||| ||||||||| ||| |||||||| |||| | ||||
Sbjct 440 TCCGGTTTACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTC-CATCCTC 498
Query 479 CGGTTTACAA 488
|||| |||||
Sbjct 499 CGGTCTACAA 508
Score = 228 bits (123), Expect = 9e-59
Identities = 295/371 (80%), Gaps = 39/371 (11%)
Strand=Plus/Plus
Query 88 CCTCCGGTTTACACTT-CACCGGTT-AATAAACCCACGCTTCCACCTCCGGTTTACACTC 145
||||||||||||| || |||||||| || ||||| || |||||| |||||||||||||||
Sbjct 150 CCTCCGGTTTACA-TTCCACCGGTTCAA-AAACCTACCCTTCCATCTCCGGTTTACACTC 207
Query 146 CACCGGTTCACAAACCTACCCTTC-CACCTCCTGTTTACACT---CC-AC-CT--GTCCA 197
|||| | |||| ||||| | || ||||||| ||||| ||| || || || |||
Sbjct 208 CACCTGCCCACAGGCCTACAC-TCTCACCTCCGGTTTATACTAAACCAACTCTACCTCCT 266
Query 198 CAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTACCACCTCC-GGCTTACA 256
| || ||||||| || |||||||| |||||||||||||||||| |||| | | ||||
Sbjct 267 CCGGCTTACACTC-CA---CCGGTTTATACTAAGCCAACTCTACCAGCTCCTGTC-TACA 321
Query 257 CTCCACCGGTTTACAATAAGCCAACGCTCCCAGCTCCTG--T---CT-A--C-A--CTC- 304
||||||| |||||| ||||| || || || |||||| | || | | | |||
Sbjct 322 CTCCACCTGTTTAC---AAGCCTACACTTTCACCTCCTGTTTACACTAAGCCAACTCTCT 378
Query 305 CGCCT---GTTTATAAGCCTACACTCTCCCCTCCGGTTTACACTAAGCCAACTCTCTTAC 361
| ||| ||||| ||||| || ||||| |||||||||||||||||||||||||||| |
Sbjct 379 CACCTCCGGTTTACAAGCCAACTCTCTCACCTCCGGTTTACACTAAGCCAACTCTCTCCC 438
Query 362 CTCCGGTTTTCAAGCCTACACTCTCTCCTCCAGTTTACACTAAGCCAACTCTCTCA-CCT 420
||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| || |||
Sbjct 439 CTCCGGTTTACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTC-CATCCT 497
Query 421 ACGGTTTACAA 431
|||| |||||
Sbjct 498 CCGGTCTACAA 508
Score = 117 bits (63), Expect = 2e-25
Identities = 151/190 (79%), Gaps = 20/190 (11%)
Strand=Plus/Plus
Query 86 CTCCTCCGGTTTACACTTCACCGG-TTA-A-TAAACCCACGCTTCCACCTCCGGTTTACA 142
||||||||| ||||||| |||||| ||| | ||| || || || ||| |||| || ||||
Sbjct 262 CTCCTCCGGCTTACACTCCACCGGTTTATACTAAGCCAACTCTACCAGCTCCTGTCTACA 321
Query 143 CTCCACCGGTTCACAAACCTACCCTTCCACCTCCTGTTTACACT---CC-A--C-CT--- 192
||||||| ||| |||| ||||| ||| ||||||||||||||||| || | | ||
Sbjct 322 CTCCACCTGTTTACAAGCCTACACTTTCACCTCCTGTTTACACTAAGCCAACTCTCTCAC 381
Query 193 GTCC-----ACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTA-CCACCT 246
||| ||||||| || |||||||||||||||||||||||||||||||| || |||
Sbjct 382 CTCCGGTTTACAAGCCAACTCTCTCACCTCCGGTTTACACTAAGCCAACTCTCTCC-CCT 440
Query 247 CCGGCTTACA 256
|||| |||||
Sbjct 441 CCGGTTTACA 450
Score = 89.8 bits (48), Expect = 4e-17
Identities = 53/55 (96%), Gaps = 2/55 (4%)
Strand=Plus/Plus
Query 197 ACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTACCA-CCTCCGG 250
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 448 ACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCT-CCATCCTCCGG 501
> Ahg324693 jgi|Araly1|324693|fgenesh1_pm.C_scaffold_5002237
Length=882
Score = 518 bits (280), Expect = 5e-146
Identities = 561/685 (82%), Gaps = 65/685 (9%)
Strand=Plus/Plus
Query 364 CCGGTTTTCAAGCCTACACTCTCTCCTCCAGTTTACACTAAGCCAACTCTCTCACCTACG 423
||||||| ||||||||| ||||| ||||| |||||||||||||||||| || ||||| ||
Sbjct 223 CCGGTTTACAAGCCTACTCTCTCACCTCCGGTTTACACTAAGCCAACTATCCCACCTCCG 282
Query 424 GTTTACAAGCCAACACTCTCTCCTCCGGTTAACAATAAGCCAAGTCTCTCGCCTCCGGTT 483
|||| ||| |||| |||||| || ||||||| |||||| |||||||||
Sbjct 283 GTTT--------ACA----CTCCACCGGTTTAC---AAGCCAACTCTCTCACCTCCGGTT 327
Query 484 T--AC-AAGCCAAC-ACTCTCTCCTCCGGTTTACACT--A--AG---CCAA--CT-CTCC 529
| || |||||||| | || | ||||||||||||||| | | ||| || ||||
Sbjct 328 TACACTAAGCCAACTA-TCCCACCTCCGGTTTACACTCCACCGGTTTACAAGCCTACTCC 386
Query 530 CT--CCTCCGGTCTACAAAAAGTCTCCAAGCTA---TTCTCCTCCACCTCCATTTGCACC 584
|| ||||||||||||||||||||||||||||| ||||||||| ||||||| || |||
Sbjct 387 CTCACCTCCGGTCTACAAAAAGTCTCCAAGCTATTCTTCTCCTCCTCCTCCATATGTACC 446
Query 585 AAAACCAACCTACACTCCACCCACCAAACCATACGTCCCAGAGAT-CATTAAAGCCGTTG 643
| ||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||
Sbjct 447 AGAACCAACCTACACTCCACCCACCAAACCATACGTCCCAGAGATTC-TTAAGGCCGTTG 505
Query 644 GA-GGCATCAT-CTTATGCAAAAACGGCTACGAAACCTACCCTATTCAAGGAGCGAAAGC 701
| |||||||| || |||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 506 -ATGGCATCATTCT-ATGCAAAAACGGCTACGAAACCTACCCTATTCTAGGAGC-AAAGG 562
Query 702 AA-AGATTGTGTGCTCGGAGAGGGGGTCATACGAGAAGAGTAAGAACGAGGTTGTCATCT 760
| ||||||||||||| || | ||||||| ||| || |||||||||||||| ||||
Sbjct 563 TAGAGATTGTGTGCTCCGACCCAGCATCATACGGGAAAAGCAAGAACGAGGTTGTGATCT 622
Query 761 ACAGTGATCCAACTGACTTTAAGGGATACTTCCACGTGGTGTTA-ACCCACATCAAGAAC 819
|||||||||||||||||| ||||||||||||||||||| | || ||| | |||||| |
Sbjct 623 ACAGTGATCCAACTGACTCTAAGGGATACTTCCACGTG-TCTTTGACCAATATCAAGGAT 681
Query 820 CTATCTAACTGCCGTGTCAAGCTCTACA-CATCTCCCGTCGAGACTTGCAAGAACCCAAC 878
||| || |||| ||||||||||| ||| | ||||| |||||||||||||||||||| ||
Sbjct 682 CTAGCTTACTGTCGTGTCAAGCTTTACTTC-TCTCCGGTCGAGACTTGCAAGAACCCGAC 740
Query 879 CAATGTCAACAAGGGTCTCACCGGAGTTCCCTT--C-T----CG-AT---GTA-CT-C-C 924
|||||| |||||||||||||| ||||||||||| | | || || || || | |
Sbjct 741 CAATGTTAACAAGGGTCTCACAGGAGTTCCCTTGTCGTTGTACGCATACCGTTTCTACTC 800
Query 925 -GACAAGAACTTGAAGCTCTTCAACGTTGGTCCTTTCTACTTCACCGCCGGTTCCAAGGC 983
|||||||||||||||||||| | ||| || |||||||||| ||||| | | |||||||
Sbjct 801 TGACAAGAACTTGAAGCTCTTTAGCGTCGGACCTTTCTACTACACCG--G-TCCCAAGGC 857
Query 984 TGCTCCCGCCACTCCCAGATACTGA 1008
||| ||||||||||||| |||||||
Sbjct 858 TGCCCCCGCCACTCCCAAATACTGA 882
Score = 182 bits (98), Expect = 7e-45
Identities = 179/216 (83%), Gaps = 14/216 (6%)
Strand=Plus/Plus
Query 89 CTCCGGTTTACACTTCA-CCGGTTAATAAACCCACGCTTCCACCTCCGGTTTACACTCCA 147
||||||||||||| || ||| | | || || || |||||||||||||||||||||||
Sbjct 131 CTCCGGTTTACACCCCACCCGCCT-ACAAGCCAACTCTTCCACCTCCGGTTTACACTCC- 188
Query 148 CCGGTTCACAAACCTACCCTTCCACCTCCTGTTTACACTCCACCTGTCCACAAGCCTACA 207
|| | | | || ||| |||||||||| |||||||| ||||| || ||||||||||
Sbjct 189 CCCG--C-C-AA-CTA---TTCCACCTCCGGTTTACACCCCACCGGTTTACAAGCCTACT 240
Query 208 CTCTCACCTCCGGTTTACACTAAGCCAACTCTACCACCTCCGGCTTACACTCCACCGGTT 267
|||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||
Sbjct 241 CTCTCACCTCCGGTTTACACTAAGCCAACTATCCCACCTCCGGTTTACACTCCACCGGTT 300
Query 268 TACAATAAGCCAACGCTCCCAGCTCCTGTCTACACT 303
||||| |||||| ||| || |||| || ||||||
Sbjct 301 TACAA---GCCAACTCTCTCACCTCCGGTTTACACT 333
Score = 154 bits (83), Expect = 2e-36
Identities = 175/216 (81%), Gaps = 19/216 (9%)
Strand=Plus/Plus
Query 88 CCTCCGGTTTACACTTCACCGGTTAATAAACCCACGCTTC-CACCTCCGGTTTACACTCC 146
|||||||||||||| |||||||| | || || || | || |||||||||||||||||
Sbjct 205 CCTCCGGTTTACACCCCACCGGTTTACAAGCCTACTC-TCTCACCTCCGGTTTACACT-- 261
Query 147 ACCGGTTCACAAACCTACCCTTCCACCTCCTGTTTACACTCCACCTGTCCACAAGCCTAC 206
| | | | || ||| | |||||||| |||||||||||||| || ||||||| ||
Sbjct 262 A--AG--C-C-AA-CTA---TCCCACCTCCGGTTTACACTCCACCGGTTTACAAGCCAAC 311
Query 207 ACTCTCACCTCCGGTTTACACTAAGCCAACTCTACCACCTCCGGCTTACACTCCACCGGT 266
|||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 312 TCTCTCACCTCCGGTTTACACTAAGCCAACTATCCCACCTCCGGTTTACACTCCACCGGT 371
Query 267 TTACAATAAGCCAACGCTCC-CAGCTCCTGTCTACA 301
|||||| ||| || | || || |||| |||||||
Sbjct 372 TTACAA---GCCTACTC-CCTCACCTCCGGTCTACA 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47005556661
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5