BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G54980.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value Ahg914873 jgi|Araly1|914873|Al_scaffold_0001_5127 658 0.0 > Ahg914873 jgi|Araly1|914873|Al_scaffold_0001_5127 Length=558 Score = 658 bits (356), Expect = 0.0 Identities = 479/539 (89%), Gaps = 5/539 (1%) Strand=Plus/Plus Query 7 AAAAAGATTCTGCCGATCACTTTACAAGTGGCAGTTTTGTTACAATTTCTCATAGTGTC- 65 ||||| ||||| | ||| |||| |||||||| ||||||||||||||||| |||| || Sbjct 23 AAAAA-TTTCTGTCAATCGCTTTGCAAGTGGCTTTTTTGTTACAATTTCTCGTAGTCTCA 81 Query 66 TGCTTCGGCCTTGACCTCCACAAAATACATAGATAAATTATGTGAGATGCAATCCGTTGA 125 | ||||| |||||| ||||||||||||||| ||||||||||| ||||||| |||| | || Sbjct 82 T-CTTCGACCTTGAACTCCACAAAATACATCGATAAATTATGCGAGATGCCATCCATCGA 140 Query 126 AGACAAAACCTTTTGTTTGCAAACGTTGAGCGCCA-ATCCTCTTGCGGCTTCCGCCACTG 184 |||||| |||||||||||||||||||||||| || |||||||||| ||||| ||||||| Sbjct 141 CGACAAAGCCTTTTGTTTGCAAACGTTGAGCG-CATATCCTCTTGCCGCTTCTGCCACTG 199 Query 185 GCTTGCTCCCACTTGCGGAAGTCGTGATCAGGGGCATTGACTTACCCTATGCCAAGTTGT 244 ||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| Sbjct 200 GCTTGCTCCCACTTGCGGAAGTCGTGATCCGCGGCATTGACATACCCTATGCCAAGTTGT 259 Query 245 TGGTGAAATCTGCAGATAGAGCAATAGAAAAGATACCGGCTCTGAAGGAACAGTTCAAGG 304 |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| Sbjct 260 TGGTGAAATCTGCAGACAGAGCAGCAGAAAAGGTACCGGCTCTGAAGGAACAGTTCAAGG 319 Query 305 AGTGCCAAGATTCCTTCCTTCGCATAGTAATGTCTCTCAAGAGTGCTGCTTCAGAGCTCA 364 ||||| |||| ||| | ||| |||||||||||||||||||||||||||||||| |||| Sbjct 320 CGTGCCGAGATGCCTACTTTCTTATAGTAATGTCTCTCAAGAGTGCTGCTTCAGAACTCA 379 Query 365 AGGTATCTCCAGACACCGCCAACTATGATGCTATGATTTGTTTCGACGAAACAAAGCGAG 424 || |||||||||| ||||| ||||||||||||||| ||||||||||| |||||| | || Sbjct 380 AGATATCTCCAGAAACCGCTAACTATGATGCTATGGTTTGTTTCGACCAAACAACCCTAG 439 Query 425 TGAAGGAGGTGATCGGGAAAAACGAAGACGTGACTTCGAAGAGTCTCATAGAGATGACAT 484 || || | |||||||||||||| ||||| ||||||||||||||||||| |||||||||| Sbjct 440 TGCAGAAATTGATCGGGAAAAACAAAGACTTGACTTCGAAGAGTCTCATGGAGATGACAT 499 Query 485 TGCGTATGGAGAAGCTCATTTTTCTTGCTCTTGGAGCCACCGAAGTTGTTGGAGGATGA 543 |||||||||| ||||||||| ||| ||| ||||||||||||||||||||||||||||| Sbjct 500 TGCGTATGGATAAGCTCATTCGTCTCGCTATTGGAGCCACCGAAGTTGTTGGAGGATGA 558 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19802750691 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5