BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54980.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914873 jgi|Araly1|914873|Al_scaffold_0001_5127 658 0.0
> Ahg914873 jgi|Araly1|914873|Al_scaffold_0001_5127
Length=558
Score = 658 bits (356), Expect = 0.0
Identities = 479/539 (89%), Gaps = 5/539 (1%)
Strand=Plus/Plus
Query 7 AAAAAGATTCTGCCGATCACTTTACAAGTGGCAGTTTTGTTACAATTTCTCATAGTGTC- 65
||||| ||||| | ||| |||| |||||||| ||||||||||||||||| |||| ||
Sbjct 23 AAAAA-TTTCTGTCAATCGCTTTGCAAGTGGCTTTTTTGTTACAATTTCTCGTAGTCTCA 81
Query 66 TGCTTCGGCCTTGACCTCCACAAAATACATAGATAAATTATGTGAGATGCAATCCGTTGA 125
| ||||| |||||| ||||||||||||||| ||||||||||| ||||||| |||| | ||
Sbjct 82 T-CTTCGACCTTGAACTCCACAAAATACATCGATAAATTATGCGAGATGCCATCCATCGA 140
Query 126 AGACAAAACCTTTTGTTTGCAAACGTTGAGCGCCA-ATCCTCTTGCGGCTTCCGCCACTG 184
|||||| |||||||||||||||||||||||| || |||||||||| ||||| |||||||
Sbjct 141 CGACAAAGCCTTTTGTTTGCAAACGTTGAGCG-CATATCCTCTTGCCGCTTCTGCCACTG 199
Query 185 GCTTGCTCCCACTTGCGGAAGTCGTGATCAGGGGCATTGACTTACCCTATGCCAAGTTGT 244
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||
Sbjct 200 GCTTGCTCCCACTTGCGGAAGTCGTGATCCGCGGCATTGACATACCCTATGCCAAGTTGT 259
Query 245 TGGTGAAATCTGCAGATAGAGCAATAGAAAAGATACCGGCTCTGAAGGAACAGTTCAAGG 304
|||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||
Sbjct 260 TGGTGAAATCTGCAGACAGAGCAGCAGAAAAGGTACCGGCTCTGAAGGAACAGTTCAAGG 319
Query 305 AGTGCCAAGATTCCTTCCTTCGCATAGTAATGTCTCTCAAGAGTGCTGCTTCAGAGCTCA 364
||||| |||| ||| | ||| |||||||||||||||||||||||||||||||| ||||
Sbjct 320 CGTGCCGAGATGCCTACTTTCTTATAGTAATGTCTCTCAAGAGTGCTGCTTCAGAACTCA 379
Query 365 AGGTATCTCCAGACACCGCCAACTATGATGCTATGATTTGTTTCGACGAAACAAAGCGAG 424
|| |||||||||| ||||| ||||||||||||||| ||||||||||| |||||| | ||
Sbjct 380 AGATATCTCCAGAAACCGCTAACTATGATGCTATGGTTTGTTTCGACCAAACAACCCTAG 439
Query 425 TGAAGGAGGTGATCGGGAAAAACGAAGACGTGACTTCGAAGAGTCTCATAGAGATGACAT 484
|| || | |||||||||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct 440 TGCAGAAATTGATCGGGAAAAACAAAGACTTGACTTCGAAGAGTCTCATGGAGATGACAT 499
Query 485 TGCGTATGGAGAAGCTCATTTTTCTTGCTCTTGGAGCCACCGAAGTTGTTGGAGGATGA 543
|||||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 500 TGCGTATGGATAAGCTCATTCGTCTCGCTATTGGAGCCACCGAAGTTGTTGGAGGATGA 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19802750691
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5