BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54990.1
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474773 jgi|Araly1|474773|fgenesh2_kg.1__4727__AT1G54990.1 2353 0.0
> Ahg474773 jgi|Araly1|474773|fgenesh2_kg.1__4727__AT1G54990.1
Length=1621
Score = 2353 bits (1274), Expect = 0.0
Identities = 1523/1638 (93%), Gaps = 38/1638 (2%)
Strand=Plus/Plus
Query 12 TCTCTCACATTCTCTCAAGTTCCAAGCTTTCTTTAATGGCGATTATCACAGAAGAAGAAG 71
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 TCTCTCACATTCTCTCAAGTTCCAAGCTTTCTTCAATGGCGATTATCACAGAAGAAGAAG 60
Query 72 AGGATCCAAAAACCCTAAATCCACCGAAGAACAAACCTAAAGACTCTGACTTTACGAAAT 131
|||| ||||||| ||||||||||||||| || ||| |||||||||| ||||||||||||
Sbjct 61 AGGAACCAAAAATCCTAAATCCACCGAATAATAAAGCTAAAGACTCAAACTTTACGAAAT 120
Query 132 CTGAATCAACTATGAAGAACCCTAAACCCCAATCTCAAAACCCTTTCCCATTTTGGTTCT 191
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 CTGAATCAACTATGAAGAACCCAAAACCCCAATCTCAAAACCCTTTCCCATTTTGGTTCT 180
Query 192 ACTTTACAGTAGTCGTCTCACTAGCCACAATCATCTTCATAtctctctctctgttctctt 251
|| |||| || |||||||||| ||||||||||||||||||||||||||| | |||||||
Sbjct 181 ACACTACACTAATCGTCTCACTCGCCACAATCATCTTCATATCTCTCTCTGTTTTCTCTT 240
Query 252 ctcAAAACGATCCAAGATCTTGGTTTCTCTCACTCCCACCAGCTCTTCGTCAACATTACT 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 CTCAAAACGATCCAAGATCTTGGTTTCTCTCACTCCCACCAGCTCTTCGTCAACATTTCT 300
Query 312 CAAATGGACGAACAATCAAAGTCCAAGTAAACTCAAACGAGTCACCAATTGAAGTCTTTG 371
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 301 CAGATGGACGAACAATCAAAGTCCAAGTAAACCCAAACGAGCCACCAATTGAAGTCTTTG 360
Query 372 TAGCTGAATCAGGTTCGATTCATACAGAGACTGTTGTAATCGTTCATGGGTTAGGTCTAA 431
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 TAGCTGAATCAGGTTCGATTCATACAGAGAATGTTGTAATCGTTCATGGGTTAGGTCTAA 420
Query 432 GTTCGTTTGCTTTTAAGGAAATGATTCAATCTCTTGGATCAAAAGGGATCCATAGTGTTG 491
|||||||||| ||||||||||||||||| ||||||||||||||||| | ||| ||||||
Sbjct 421 GTTCGTTTGCGTTTAAGGAAATGATTCAGGCTCTTGGATCAAAAGGGTTTCATGGTGTTG 480
Query 492 CTATTGATTTACCTGGAAATGGGTTCTCTGATAAGTCAATGGTAG-TGATTGGTGGAGAT 550
|||||||||||||||||||||||||||| |||||||||||||| | || |||||||||||
Sbjct 481 CTATTGATTTACCTGGAAATGGGTTCTCAGATAAGTCAATGGTTGTTG-TTGGTGGAGAT 539
Query 551 AGAGAGATAGGGTTTGTGGCTAGAGTTAAGGAAGTTTATGGTTTGATTCAAGAGAAAGGT 610
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 540 AGAGAGATAGGGTTTGTTGCTAGGGTTAAGGAAGTTTATGGTTTGATTCAAGAGAAAGGT 599
Query 611 GTGTTTTGGGCTTTTGATCAGATGATTGAAACTGGAGATTTGCCTTATGAGGAGATCATA 670
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 600 GTGTTTTGGGCTTTTGATCAGATGATTGAAACTGGAGATTTGCCTTATGAGGAGATTATA 659
Query 671 AAGCTTCAGAATTCGAAAAGGAGAAGCTTCAAAGCTATCGAGTTAGGGAGTGAAGAAACT 730
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 660 AAGCTTCAGAATTCGAAAAGGAGAAGCTTTAAAGCTATTGAATTAGGGAGTGAAGAAACT 719
Query 731 GCTAGAGTTTTAGGTCAAGTGATTGATACTTTGGGTTTAGCTCCTGTGCATTTGGTTCTT 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GCTAGAGTTTTAGGTCAAGTGATTGATACTTTGGGTTTAGCTCCTGTGCATTTGGTTCTT 779
Query 791 CATGATTCAGCTTTAGGGTTAGCTTCGAATTGGGTTTCTGAGAATTGGCAAAGTGTTCGA 850
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 780 CATGATTCAGCTTTAGGGTTGGCTTCGAATTGGGTTTCTGAGAATTCGCAAAGTGTTCGA 839
Query 851 AGTGTAACTCTTATTGACTCTAGTATTAGTCCAGCTTTGCCGTTGTGGGTTTTGAATGTA 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AGTGTAACTCTTATTGACTCTAGTATTAGTCCAGCTTTGCCGTTGTGGGTTTTGAATGTA 899
Query 911 CCGGGGATTCGAGAGATTTTGTTAGCG-TTTTCGTTTGGTTTTGAGAAGCTAGTGAGCTT 969
||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 900 CCGGGGATTCGAGAGGTTTTGTTAG-GATTTTCGTTTGGTTTTGAGAAGCTAGTGAGTTT 958
Query 970 CCGGTGCTCAAAGGAGATGACTTTATCGGATATTGATGCTCATAGGATACTTTTGAAGGG 1029
||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 959 CCGTTGCTCAAAGGAGATGACTTTATCGCAAATTGATGCTCATAGGATACTTTTGAAGGG 1018
Query 1030 AAGAAATGGGAGAGAAGCTGTTGTTGCTTCGTTAAACAAGTTAAACCATAGCTTTGACAT 1089
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1019 AAGAAATGGGAGGGAAGCTGTTGTTGCTTCGTTAAAGAAGTTAAACCATAGCTTTGACAT 1078
Query 1090 TGCACAATGGGGTAATTCAGATGGGATTAATGGTATTCCGATGCAAGTGATTTGGTCTAG 1149
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GGCTCAGTGGGGTAATTCAGATGGGATTAATGGTATTCCGATGCAAGTGATTTGGTCTAG 1138
Query 1150 TGAAGCGTCTAAAGAATGGAGTGACGAGGGGCAACGTGTAGCTAAGGCTCTTCCGAAAGC 1209
||||| ||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1139 TGAAGGGTCTAAAGAATGGAGCGATGAGGGCCAACGTGTAGCTAAGGCTCTTCCGAAAGC 1198
Query 1210 AAAGTTTGTCACACATTCAGGCAGCCGGTGGCCTCAGGAAAGCAAATCCGGCGAGCTTGC 1269
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1199 AAAGTTTGTCACACACTCAGGCAGCCGGTGGCCTCAGGAAAGCAAATCCGGTGAGCTTGC 1258
Query 1270 AGATTACATATCAGAATTTGTCTCTCTCCTCCCTAAATCCATCAGACGGGTTGCTGAAGA 1329
||||||||| ||||||||||||||||| ||||| | |||||||||||||||| |||||||
Sbjct 1259 AGATTACATTTCAGAATTTGTCTCTCTTCTCCCGAGATCCATCAGACGGGTTACTGAAGA 1318
Query 1330 ACCTATCCCTGAGGAAGTACAGAAAGTGTTAGAAG-AAGCAAAGGCTGGTGATGACCATG 1388
||||||||| ||| |||| |||||||||||| ||| ||||||||||||||| ||||||||
Sbjct 1319 ACCTATCCCGGAGAAAGTTCAGAAAGTGTTA-AAGGAAGCAAAGGCTGGTGGTGACCATG 1377
Query 1389 ACCATCATCATGGCCACGGGCATGCCCATGCTGGTTACTCGGATGCTTATGGTCTTGGTG 1448
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1378 ACCATCATCATGGCCACGGGCATGCCCATGCTGGTTACACGGATGCTTACGGTCTTGGTG 1437
Query 1449 AGGAATGGACTACTACTTGATATGCCTTTTGAA-----GTT-CTTGTTATTATT-T-TAC 1500
|||||||||||||| | |||||||||||||| ||| |||||||||||| | |||
Sbjct 1438 AGGAATGGACTACT--T-GATATGCCTTTTGAGTTCTTGTTGCTTGTTATTATTATATAC 1494
Query 1501 GATGTACTCTTAATCTTATGACTATTTTGAGATTTTTCTTTTGGGA--------G-TTTA 1551
|||| |||||||| ||||| |||||||||||||||| |||| | ||||
Sbjct 1495 TATGTCCTCTTAATTTTATGTCTATTTTGAGATTTTTTTTTTTTTTTTTTTTCTGGTTTA 1554
Query 1552 AAGTCT-GAGATACTACTTCCAAATATGAATCTGTGTTTTGTACTTTTTGTTTGTAAGTC 1610
|||||| |||||||||| |||||||||||||||| || ||||| | |||||||
Sbjct 1555 AAGTCTTGAGATACTACA---AAATATGAATCTGTGT---GT--TTTTT-T--GTAAGTC 1603
Query 1611 ATCAAATTTCAATAGAAA 1628
| ||||||||| ||||||
Sbjct 1604 AGCAAATTTCATTAGAAA 1621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62239460330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5