BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55000.1
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474774 jgi|Araly1|474774|fgenesh2_kg.1__4728__AT1G55000.1 1164 0.0
> Ahg474774 jgi|Araly1|474774|fgenesh2_kg.1__4728__AT1G55000.1
Length=925
Score = 1164 bits (630), Expect = 0.0
Identities = 738/790 (93%), Gaps = 8/790 (1%)
Strand=Plus/Plus
Query 9 CTGTGGATAAGCTGCTTCTGCGGCGATCAAAAACGCCGTCGACGATAATAACCTCACCGG 68
|||||||| |||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1 CTGTGGATGAGCTTCTTCTGCGGCGATCAAAAACGCCGTCGAC---AATAATCTCACCGG 57
Query 69 CGCCACCAACACCGCCCATTCTATCAACCAAACAAAATCTCGCCGCTAATTTCTCTCTCT 128
|||||||||||||||| | ||||||||||||||| |||||||||| ||| ||||||||||
Sbjct 58 CGCCACCAACACCGCCGA-TCTATCAACCAAACACAATCTCGCCGTTAAATTCTCTCTCT 116
Query 129 ATGGCGCTTT-ATTGCCGTGATACACTAATCATCATCTTCCAAAAGCTCACCGTCGCCGA 187
|||||||||| | |||||||| ||||| ||| |||||||||| ||||| |||||||||||
Sbjct 117 ATGGCGCTTTCA-TGCCGTGACACACTTATCCTCATCTTCCAGAAGCTAACCGTCGCCGA 175
Query 188 TCTAGCGCGTGCGAGCTGCGTCTGTAAGGTTTGGAATTCTGTAGCCACAGAAGACGATCT 247
|||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 176 TCTAGCTCGTGCGAGCTGCGTCTGCAAGGTTTGGAACTCTGTAGCCACAGACGACGATCT 235
Query 248 TGTTGTATCTGCTTTCACGGCTCCATGGCGGATCAAAGAACTTGTTGGAAGACCAGCTTC 307
|| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 236 AGTGGTATCGGCTTTCACGGCGCCATGGCGGATCAAAGAACTTGTTGGAAGACCAGCTTC 295
Query 308 TGTTTCGTTTTGGAGAGATAACGGAATCTGGAAATTTGCTATTTCTCATCGGATT-TGTC 366
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 296 TGCTTCGTTCTGGAGAGATAACGGAATCTGGAAATTTGCTATTTCTCATCGGATTCT-TC 354
Query 367 GTGGTGATAGTGTGACTAGCCTCGCCGTCAAATACGCCGTTCAGGTTATGGACATAAAGC 426
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 355 GTGGTGATAGTGTGACTAGCCTCGCCGTCAAATACTCCGTTCAGGTTATGGACATAAAGC 414
Query 427 GGCTAAACAACATGATGAGCGACCATGGTATTTACTCAAGAGACAGACTGCTTATCCCAA 486
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 415 GGCTAAACAACATGATGAGTGACCATGGGATTTACTCAAGAGACAGACTGCTTATCCCGA 474
Query 487 TAAGCAATCCTGAAATTCTCGCAAACACTACGTGTTATGTTGAGCTAGACAAATATGCCA 546
||||||| || ||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 475 TAAGCAAACCCGAAATTCTCGCAAACACTATGTGTTATGTAGAGCTAGACAAATATGCCA 534
Query 547 AACGAGAAGTAGCCGTTCTTTACCTCGAAGGTGCACCGAAGAGAGAACAACCTGTACCTG 606
||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 535 AACGAGAAGTAGCTGTGCTTTACCTCGAAGGTGCACCGAAGAGAGAACAACCTGTACTTG 594
Query 607 GTACGAATCAACAATCCAACTTATCAGCCGATGGAAAGCGTAGGCTAATTGAATCTCTAA 666
||| |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 595 GTATGAATCAACCATCCAACTTATCAGCCGATGGAAAGCGAAGGCTGATTGAATCTCTAA 654
Query 667 GGAGAAGCATGCAAGTTGATGATGGAACTGCTCTATACTACTTGGCTATCGCTGAAGGTG 726
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 655 GGAGAAGCATGCAAGTGGATGATGGAACCGCTCTATACTACTTGGCTATCGCTGAAGGGG 714
Query 727 ATCCTAGATCCGCATTGTCTGAGTTCTCGGCTGATCTCAGGTGGGAGAGGCAGGCTGGTC 786
||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 715 ATCCTAGATCCGCATTGTCCGAATTCTCGGCTGATCTCAGGTGGGAAAGGCAGGCTGGTC 774
Query 787 TTAACTAGGC 796
| ||||||||
Sbjct 775 TCAACTAGGC 784
Score = 99.0 bits (53), Expect = 6e-20
Identities = 53/53 (100%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1007 TGAAATATTGTTGTCTTCCGGTAAGAAATATACATTAAACCCTGTTAAGTATA 1059
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 TGAAATATTGTTGTCTTCCGGTAAGAAATATACATTAAACCCTGTTAAGTATA 925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40829644107
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5